Termination sequence requirements vary among genes transcribed by RNA polymerase III

Journal of Molecular Biology

Volumn 286, Issue 3, 1999, Pages 745-757

  Gunnery, Shobha ^a,b   Ma, Yuliang ^a,c   Mathews, Michael B ^a,b  

^a Simons Center for Quantitative Biology   (United States)

^b RUTGERS NEW JERSEY MEDICAL SCHOOL   (United States)

^c STONY BROOK UNIVERSITY   (United States)

Author keywords

5 S rRNA; Adenovirus VA RNA; RNA polymerase III; Transcription termination; U6 snRNA

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; GUANINE; RNA 5S; THYMIDINE;

ADENOVIRUS; ARTICLE; AVIADENOVIRUS; CHIMERA; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RNA GENE; STOP CODON; TRANSCRIPTION TERMINATION; XENOPUS;

ADENOVIRIDAE; AVES; AVIADENOVIRUS; AVIAN ADENOVIRUS; DNA VIRUSES; FOWL ADENOVIRUS 1; HUMAN ADENOVIRUS TYPE 2; XENOPUS;

EID: 0033605342     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2518     Document Type: Article

References (35)

1. Akusjarvi G., Mathews M. B., Andersson P., Vennstrom B., Pettersson U. Structure of genes for virus-associated RNAI and RNAII of adenovirus type 2. Proc. Natl. Acad. Sci. USA. 77:1980;2424-2428.
2. Allison D. S., Hall B. D. Effects of alterations in the 3′ flanking sequence on in vivo and in vitro expression of the yeast SUP4-o tRNATyr gene. EMBO J. 4:1985;2657-2664.
3. Anderson C. W., Lewis J. B., Atkins J. F., Gesteland R. F. Cell-free synthesis of adenovirus 2 proteins programmed by fractionated messenger RNA: a comparison of polypeptide products and messenger RNA lengths. Proc. Natl Acad. Sci. USA. 71:1974;2756-2760.
4. Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Seidman J. G., Smith J. A., Struhl K. Current Protocols in Molecular Biology. 1991;John Wiley & Sons, New York.
5. Bogenhagen D. F., Brown D. D. Nucleotide sequences in Xenopus 5S DNA required for transcription termination. Cell. 24:1981;261-270.
6. Campbell F. E. Jr., Setzer D. R. Transcription termination by RNA polymerase III: uncoupling of polymerase release from termination signal recognition. Mol. Cell Biol. 12:1992;2260-2272.
7. Chu W.-M., Ballard R. E., Schmid C. W. Palindromic sequences preceding the terminator increase polymerase III template activity. Nucl. Acids Res. 25:1997;2077-2082.
8. Cozzarelli N. R., Gerrard S. P., Schlissel M., Brown D. D., Bogenhagen D. F. Purified RNA polymerase III accurately and efficiently terminates transcription of 5S RNA genes. Cell. 34:1983;829-835.
9. Lysfrom Drosophila melanogaster. Nucl. Acids Res. 10:1982;5799-5808.
10. Dieci G., Sentenac A. Facilitating recycling pathway for RNA polymerase III. Cell. 84:1996;245-252.
11. Emerson B. M., Roeder R. G. DNA sequences and transcription factor interactions of active and inactive forms of mammalian 5 S RNA genes. J. Biol. Chem. 259:1984;7926-7935.
12. Geiduschek E. P., Kassavetis G. A. RNA polymerase III transcription complexes. McKnight S. L., Yamamoto K. R. Transcriptional Regulation. 1992;247-280 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
13. Gottlieb E., Steitz J. A. Function of the mammalian La protein: evidence for its action in transcription termination by RNA polymerase III. EMBO J. 8:1989;851-861.
14. Gunnery S., Mathews M. B. Functional mRNA can be generated by RNA polymerase III. Mol. Cell Biol. 15:1995;3597-3607.
15. Hernandez N. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1993;1291-1308.
16. Herrmann C. H., Mathews M. B. The adenovirus E1B 19-kilodalton protein stimulates gene expression by increasing DNA levels. Mol. Cell. Biol. 9:1989;5412-5423.
17. Herrmann C. H., Dery C. V., Mathews M. B. Transactivation of host and viral genes by the adenovirus E1B 19 K tumor antigen. Oncogene. 2:1987;25-35.
18. Hess J., Perez-Stable C., Wu G. J., Weir B., Tinoco I. Jr, Shen C. K. End-to-end transcription of an Alu family repeat. A new type of polymerase-III-dependent terminator and its evolutionary implication. J. Mol. Biol. 184:1985;7-21.
19. Larsson S., Bellett A., Akusjärvi G. VA RNAs from avian and human adenoviruses: dramatic differences in length, sequence, and gene location. J. Virol. 58:1986;600-609.
20. Lin-Marq N., Clarkson S. G. Efficiency of synthesis, termination and release of RNA polymerase III transcripts in Xenopus extracts depleted of La protein. EMBO J. 17:1998;2033-2041.
21. Ma Y., Mathews M. B. Comparative analysis of the structure and function of adenovirus virus-associated RNAs. J. Virol. 67:1993;6605-6617.
22. Ma Y., Mathews M. B. Secondary and tertiary structure in the central domain of adenovirus type 2 VA RNA I. RNA. 2:1996a;937-951.
23. Ma Y., Mathews M. B. Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach. J. Virol. 70:1996b;5083-5099.
24. Manley J. L., Fire A., Cano A., Sharp P. A., Gefter M. L. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract. Proc. Natl. Acad. Sci. USA. 77:1980;3855-3859.
25. Maraia R. J. Transcription termination factor La is also an initiation factor for RNA polymerase III. Proc. Natl. Acad. Sci. USA. 93:1996;3383-3387.
26. Maraia R. J., Kenan D. J., Keene J. D. Eukaryotic transcription termination factor La mediates transcript release and facilitates reinitiation by RNA polymerase III. Mol. Cell. Biol. 14:1994;2147-2158.
27. Mathews M. B. Interactions between viruses and the cellular machinery for protein synthesis. Hershey J. W. B., Mathews M. B., Sonenberg N. Translational Control. 1996;505-548 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
28. Mazabraud A., Scherly D., Muller F., Rungger D., Clarkson S. G. Structure and transcription termination of a lysine tRNA gene from Xenopus laevis. J. Mol. Biol. 195:1987;835-845.
29. I. EMBO J. 7:1988;2849-2859.
30. Iwith the protein kinase DAI: non-equivalence of binding and function. Cell. 61:1990;843-852.
31. Shaaban S. A., Bobkova E. V., Chudzik D. M., Hall B. D. In vitro analysis of elongation and termination by mutant RNA polymerases with altered termination behavior. Mol. Cell. Biol. 16:1996;6468-6476.
32. Wang Z., Roeder R. G. DNA topoisomerase I and PC4 can interact with human TFIIIC to promote both accurate termination and transcription reinitiation by RNA polymerase III. Mol. Cell. 1:1998;749-757.
33. Watson J. B., Chandler D. W., Gralla J. D. Specific termination of in vitro transcription by calf thymus RNA polymerase III. Nucl. Acids. Res. 12:1984;5369-5384.
34. Wu G. Faithful transcription of adenovirus 5.5 S RNA gene by RNA polymerase III in a human KB cell-free extract. J. Biol. Chem. 255:1980;251-258.
35. Wu G. J., Cannon R. E. Termination sequences in the control region of the Ad2-specific VARNA2 gene. J. Biol. Chem. 261:1986;12633-12642.