Analysis in vivo of turnip crinkle virus satellite RNA C variants with mutations in the 3'-terminal minus-strand promoter

Virology

Volumn 238, Issue 2, 1997, Pages 470-477

  Stupina, Vera ^a   Simon, Anne E ^a  

^a UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE MUTATION; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; PROMOTER REGION; RNA VIRUS; VIRUS GENE; VIRUS REPLICATION;

EID: 0031585575     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8850     Document Type: Article

References (37)

1. Ball L. A., Li Y. Cis-acting requirement for the replication of flock house virus RNA 2. J. Virol. 67:1993;3544-3551.
2. Boccard F., Baulcombe D. Mutational analysis of cis-acting sequences and gene function in RNA 3 of cucumber mosaic virus. Virology. 193:1993;563-578.
3. Carpenter C. D., Oh J.-W., Zhang C., Simon A. E. Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination. J. Mol. Biol. 245:1995;608-622.
4. Carpenter C. D., Simon A. E. In vivo. Virology. 226:1996a;153-160.
5. Carpenter C. D., Simon A. E. In vivo. J. Virol. 70:1996b;478-486.
6. Chang Y. C., Borja M., Scholthof H. B., Jackson A. O., Morris T. J. Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses. Virology. 210:1995;41-53.
7. Dreher T. W., Hall T. C. Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity. J. Mol. Biol. 201:1988;31-40.
8. Duggal R., Lahser F. C., Hall T. C. Cis-acting sequences in the replication of plant viruses with plus-sense RNA genomes. Annu. Rev. Phytopathol. 32:1994;287-309.
9. French R., Ahlquist P. Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA 3. J. Virol. 61:1987;1457-1465.
10. Guilley H., Carrington J. C., Balàzs E., Jonard G., Richards K., Morris T. J. Nucleotide sequence and genome organization of carnation mottle virus RNA. Nucleic Acids Res. 13:1985;6663-6677.
11. Havelda Z., Burgyán J. 3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA. Virology. 214:1995;269-272.
12. Havelda Z., Dalmay T., Burgyán J. Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication. J. Gen. Virol. 76:1995;2311-2316.
13. Heaton L. A., Carrington J. C., Morris T. J. Turnip crinkle virus infection from RNA synthesizedin vitro. Virology. 170:1989;214-218.
14. Jacobson S. J., Konnings D. A. M., Sarnow P. Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification. J. Virol. 67:1993;2961-2971.
15. Jupin I., Richards K., Jonard G., Guilley H., Pleij C. W. A. Mapping sequences required for productive replication of beet necrotic yellow vein virus RNA 3. Virology. 178:1990;273-280.
16. Kim Y. N., Jeong Y. S., Makino S. Analysis of cis-acting sequences essential for coronavirus defective interfering RNA replication. Virology. 197:1993;53-63.
17. Levis R., Weiss B. G., Tsiang M., Huang H., Schlesinger S. Deletion mapping of Sindbis virus DI RNAs derived from cDNAs defines the sequence essential for replication and packaging. Cell. 44:1986;137-145.
18. Li X. H., Heaton L. A., Morris T. J., Simon A. E. Turnip crinkle virus defective interfering RNAs intensify viral symptoms and are generatedde novo. Proc. Natl. Acad. Sci. USA. 86:1989;9173-9177.
19. Li X. H., Simon A. E. In vivo. J. Virol. 65:1991;4582-4590.
20. Lin Y.-J., Lai M. M. C. Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement of an internal and discontiguous sequence for replication. J. Virol. 67:1993;6110-6118.
21. Lin Y.-J., Liao C.-L., Lai M. M. C. Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: Implication for the role of minus-strand RNA in RNA replication and transcription. J. Virol. 68:1994;8131-8140.
22. Nagy P. D., Carpenter C. D., Simon A. E. A novel 3′ end repair mechanism in an RNA virus. Proc. Natl. Acad. Sci. USA. 94:1997;1113-1118.
23. Nutter R. C., Scheets K., Panganiban L. C., Lommel S. A. The complete nucleotide sequence of maize chlorotic mottle virus genome. Nucleic Acids Res. 17:1989;3163-3177.
24. Oh J.-W., Kong Q., Song C., Carpenter C. D., Simon A. E. Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility withArabidopsis thaliana. Mol. Plant-Microbe Interact. 8:1995;979-987.
25. Pilipenko E. V., Maslova S., Sinyakov A. N., Agol V. I. Towards identification ofcis. Nucleic Acids Res. 20:1992;1739-1745.
26. Rohll J. B., Holness C. L., Lomonossoff G. P., Maule A. J. 3′-terminal nucleotide sequences important for the accumulation of cowpea mosaic virus M-RNA. Virology. 193:1993;672-679.
27. Rohll J. B., Moon D. H., Evans D. J., Almond J. W. The 3′ untranslated region of picornavirus RNA: Features required for efficient genome replication. J. Virol. 69:1995;7835-7844.
28. Roossinck M. J., Sleat D. E., Palukaitis P. Satellite RNAs of plant viruses: Structures and biological effects. Microbiol. Rev. 56:1992;265-279.
29. Roux L., Simon A. E., Holland J. J. Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo. Adv. Virus Res. 40:1991;181-211.
30. Skotnicki M. L., Mackenzie A. M., Torronen M., Gibbs A. J. The genomic sequence of cardamine chlorotic fleck carmovirus. J. Gen. Virol. 74:1993;1933-1937.
31. Simon A. E., Howell S. H. The virulent satellite RNA of turnip crinkle virus has a major domain homologous to the 3′ end of the helper virus genome. EMBO J. 5:1986;3423-3438.
32. Song C., Simon A. E. RNA-dependent RNA polymerase from plants infected with turnip crinkle virus can transcribe (+)- and (-)-strands of virus-associated RNAs. Proc. Natl. Acad. Sci. USA. 91:1994;8792-8796.
33. Song C., Simon A. E. Requirement of a 3′-terminal stem-loopin vitro. J. Mol. Biol. 254:1995;6-14.
34. Takamatsu N., Watanabe Y., Meshi T., Okada Y. Mutational analysis of the pseudoknot region in the 3′ noncoding region of tobacco mosaic virus RNA. J. Virol. 64:1990;3686-3693.
35. Thomson M., Dimmock N. J. Common sequence elements in structurally unrelated genomes of defective interfering Semliki Forest virus. Virology. 199:1994;354-365.
36. Tsai C.-H., Dreher T. W. Second-site suppressor mutations assist in studying the function of the 3′ noncoding region of turnip yellow mosaic virus RNA. J. Virol. 66:1992;5190-5199.
37. Tsiang M., Weiss B. G., Schlesinger S. Effects of 5′-terminal modifications on the biological activity of defective interfering RNAs of Sindbis virus. J. Virol. 62:1988;47-53.