Identification of the calcium binding site and a novel ytterbium site in blood coagulation factor XIII by x-ray crystallography

Journal of Biological Chemistry

Volumn 274, Issue 8, 1999, Pages 4917-4923

  Fox, Brian A ^a   Yee, Vivien C ^b   Pedersen, Lars C ^c   Le Trong, Isolde ^d   Bishop, Paul D ^e   Stenkamp, Ronald E ^d   Teller, David C ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^b LERNER RESEARCH INSTITUTE   (United States)

^c NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

^d UNIVERSITY OF WASHINGTON   (United States)

^e ZYMOGENETICS INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BLOOD CLOTTING FACTOR 8; CALCIUM; YTTERBIUM;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; BLOOD CLOTTING; CALCIUM BINDING; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN STABILITY; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

EID: 0033582463     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.8.4917     Document Type: Article

References (49)

1. Laki, K., and Lorand, L. (1948) Science 108, 280
2. Lewis, K. B., Teller, D. C., Fry, J., Lasser, G. W., and Bishop, P. D. (1997) Biochemistry 36, 995-1002
3. Ichinose, A., Tamaki, T., and Aoki, N. (1983) FEBS Lett 153, 369-371
4. Muszbek, L., Ádány, R., and Mikkola, H. (1996) Crit. Rev. Clin. Lab. Sci. 33, 357-421
5. Bárdos, H., Molnár, P., Cdécsei, G., and Ádány, R. (1996) Blood Coagul. Fibrinolysis 7, 536-548
6. Carmassi, F., De Negri, F., Morale, M., Song, K. Y., and Chung, S. O. (1996) Semin. Thromb. Hemostasis 22, 489-496
7. Kitchens, C. S., and Newcomb, T. F. (1979) Medicine 58, 413-428
8. Board, P. G., Losowsky, M. S., and Miloszewski, K. J. (1993) Blood Rev. 7, 229-242
9. Greenberg, C. S., Birckbichler, P. J., and Rice, R. H. (1991) FASEB J. 5, 3071-3077
10. Yee, V. C., Pedersen, L. C., Le Trong, I., Bishop, P. D., Stenkamp, R. E., and Teller, D. C. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7296-7300
11. Pederson, L. C., Yee, V. C., Bishop, P. D., Le Trong, I., Teller, D. C., and Stenkamp, R. E. (1994) Protein Sci. 3, 1131-1135
12. Curtis, C. G., Brown, K. L., Credo, R. B., Domanik, R. A., Gray, A., Stenberg, P., and Lorand, L. (1974) Biochemistry 13, 3774-3780
13. Cooke, R. D., and Holbrook, J. J. (1974) Biochem. J. 141, 79-84
14. Hornyak, T. J., and Shafer, J. A. (1991) Biochemistry 30, 6175-6182
15. Credo, R. B., Curtis, C. G., and Lorand, L. (1978) Proc. Natl. Acad. Sci. U. S. A. 75, 4234-4237
16. Muszbek, L., Haramura, G., and Polgár, J. (1995) Thromb. Haemostasis 73, 702-705
17. Takahashi, N., Takahashi, Y., and Putnam, F. W. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 8019-8023
18. Ichinose, A., and Davie, E. W. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 5829-5833
19. Yee, V. C., Le Trong, I., Bishop, P. D., Pedersen, L. C., and Stenkamp, R. E., Teller, D. C. (1996) Semin. Thromb. Hemostasis 22, 377-384
20. Lai, T. S., Achyuthan, K. E., Santiago, M. A., and Greenberg, C. S. (1994) J. Biol. Chem. 269, 24596-24601
21. Ikura, K., Yu, C., Nagao, M., Sasaki, R., Furuyoshi, S., and Kawabata, N. (1995) Arch. Biochem. Biophys. 318, 307-313
22. Mary, A., Achyuthan, K. E., and Greenberg, C. S. (1988) Arch. Biochem. Biophys. 261, 112-121
23. De Backer-Royer, C., and Meunier, J. C. (1992) Int. J. Biochem. 24, 637-642
24. Achyuthan, K. E., Mary, A., and Greenberg, C. S. (1989) Biochem. J. 257, 331-338
25. Bishop, P. D., Teller, D. C., Smith, R. A., Lasser, G. W., Gilbert, T., and Seale, R. L. (1990) Biochemistry 29, 1861-1869
26. Brunger, A. T. (1992) X-PLOR Version 3 (1): A System for X-ray Crystallography and NMR, Yale University Press, New Haven, CT
27. McRee, D. E. (1992) J. Mol. Graphics 10, 44-46
28. van den Akker, F., and Hol, W. G. J. (1999) Acta Crystallogr. Sect. D 55, 206-218
29. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
30. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
31. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
32. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
33. Weiss, M. S., Metzner, H. J., and Hilgenfeld, R. (1998) FEBS Lett. 423, 291-296
34. Eisenberg, D., Luthy, R., and Bowie, J. U. (1997) Methods Enzymol. 277, 396-404
35. Colovos, C., and Yeates, T. O. (1993) Protein Sci. 2, 1511-1519
36. Hooft, R. W. W., Vriend, G., Sander, C., and Abola, E. E. (1996) Nature 381, 272
37. McDonald, N. Q., Panayotatos, N., Hendrickson, W. A. (1995) EMBO J. 14, 2689-2699
38. Shapiro, L., Fannon, A. M., Kwong, P. D., Thompson, A., Lehmann, M. S., Grubel, G., Legrand, J. F., Als-Nielsen, J., Colman, D. R., Hendrickson, W. A. (1995) Nature 374, 327-337
39. Burling, F. T., Weis, W. I., Flaherty, K. M., Brunger, A. T. (1996) Science 271, 72-77
40. Hegde, R. S., Grossman, S. R., Laimins, L. A., Sigler, P. B. (1992)Nature 359, 505-512
41. Sippl, M. J. (1993) J. Comput. Aided Mol. Des. 7, 473-501
42. Yee, V. C., Pedersen, L. C., Bishop, P. D., Stenkamp, R. E., and Teller, D. C. (1996) Thromb. Res. 78, 389-97
43. Pedersen, L. C. (1994) X-ray Structure Determination of Factor XIII. Ph.D. dissertation, University of Washington, Seattle, WA
44. Greenberg, C. S., Achyuthan, K. E., and Fenton, J. W., II (1987) Blood 69, 867-871
45. McPhalen, C. A., Strynadka, N. C. J., and James, M. N. G. (1991) Adv. Protein Chem. 42, 77-144
46. Mikkola, H., and Palotie, A. (1996) Semin. Thromb. Hemostasis 22, 393-398
47. Anwar, R., Stewart, A. D., Miloszewski, K. J. A., Losowsky, M. S., and Markham, A. F. (1995) Br. J. Haematol. 91, 728-735
48. Aslam, S., Yee, V. C., Narayanan, S., Duraisamy, G., and Standen, G. R. (1997) Br. J. Haematol. 98, 346-352
49. Takahashi, N., Tsukamoto, H., Umeyama, H., Castaman, G., Rodeghiero, F., and Ichinose, A. (1998) Blood 91, 2830-2838