Organization of the gene for gelatin-binding protein (GBP28)

Gene

Volumn 229, Issue 1-2, 1999, Pages 67-73

  Saito, Kiyomi ^a   Tobe, Takashi ^a   Minoshima, Shinsei ^b   Asakawa, Shuichi ^b   Sumiya, Junichi ^a   Yoda, Madoka ^a   Nakano, Yasuko ^a   Shimizu, Nobuyoshi ^b   Tomita, Motowo ^a  

^a SHOWA UNIVERSITY   (Japan)

^b KEIO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

Chromosome 3; GBP28; Gene structure

Indexed keywords

BINDING PROTEIN; DNA FRAGMENT; GELATIN;

ARTICLE; CHROMOSOMAL LOCALIZATION; CHROMOSOME 3; DNA SEQUENCE; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENE MAPPING; GENE STRUCTURE; HUMAN; HUMAN TISSUE; INTRON; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION;

ADIPONECTIN; ALU ELEMENTS; ANIMALS; BASE SEQUENCE; CARRIER PROTEINS; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 3; CLONING, MOLECULAR; EXONS; GUINEA PIGS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; INTERCELLULAR SIGNALING PEPTIDES AND PROTEINS; INTRONS; LEPTIN; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PROTEINS;

EID: 0033580457     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00041-4     Document Type: Article

References (35)

1. Asakawa S., Abe I., Kudoh Y., Kishi N., Wang Y., Kubota R., Kudoh J., Kawasaki K., Minoshima S., Shimizu N. Human BAC library: construction and rapid screening. Gene. 191:1997;67-79.
2. Birkenmeier E.H., Gwynn B., Howard S., Jerry J., Gordon J.I., Landschulz W.H., McKnight S.L. Tissue-specific expression, developmental regulation and genetic mapping of the gene encoding CCAAT/enhancer binding protein. Genes Dev. 3:1989;1146-1156.
3. Cao Z., Umek R.M., McKnight S.L. Regulated expression of three C/EBP isoforms during adipose conversion of 3T3-L1 cells. Genes Dev. 5:1991;1538-1552.
4. Cook J.L., Irias-Donaghey S., Deininger P.L. Regulation of rodent myelin proteolipid protein gene expression. Neurosci. Lett. 137:1992;56-60.
5. Cooper C., Henderson A., Artandi S., Avitahl N., Calame K. Ig/EBP (C/EBP gamma) is a transdominant negative inhibitor of C/EBP family transcriptional activators. Nucleic Acids Res. 23:1995;4371-4377.
6. Descombes P., Schibler U. A liver-enriched transcriptional activator protein, LAP and a transcriptional inhibitory protein, LIP, are translated from the same mRNA. Cell. 67:1991;569-579.
7. Dynan W.S. Promoter for housekeeping gene. Trends Genet. 6:1986;196-197.
8. Feinberg A.P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:1983;6-13.
9. Gong D.W.B.S., Pratley R.E., Weintraub B.D. Genomic structure and promoter analysis of the human obese gene. J. Biol. Chem. 271:1996;3971-3974.
10. Hariharan N., Perry R.P. Functional dissection of a mouse ribosomal protein promoter: significance of the polypyrimidine initiator and an element in the TATA-box region. Proc. Natl. Acad. Sci. USA. 87:1990;1526-1530.
11. Irwin, D.M., 1986. Ph.D. thesis, University of British Columbia, Vancouver.
12. Isse N., Ogawa Y., Tamura N., Masuzaki H., Mori K., Okazaki T., Satoh N., Shigemoto M., Yoshimasa Y., Nishi S., Hosoda K., Inazawa J., Nakao K. Structural organization and chromosomal assignment of the human obese gene. J. Biol. Chem. 270:1995;27728-27733.
13. Landschulz W.H., Johnson P.F., McKnight S.L. The DNA binding domain of the rat liver nuclear protein C/EBP is bipartite. Science. 243:1989;1681-1688.
14. Maeda K., Okubo K., Shimomura I., Funahashi T., Matsuzawa Y., Matsubara K. cDNA cloning and expression of a novel adipose specific collagen-like factor, apM1 (Adipose Most Abundant Gene Transcript 1). Biochem. Biophys. Res. Commun. 221:1996;286-289.
15. Maniatis T., Fritsch E.F., Sambrook J. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
16. Means A.L., Farnham P.J. Transcription initiation from the dihydrofolate reductase promoter is positioned by HIP1 binding at the initiation site. Mol. Cell. Biol. 10:1990;653-661.
17. Minoshima S., Wang Y., Ichida K., Nishino T., Shimizu N. Mapping of the gene for human xanthine dehydrogenase (oxidase) (XDH) to band p23 of chromosome 2. Cytogenet. Cell Genet. 68:1995;52-53.
18. Muragami Y., Mattei M.G., Yamaguchi N., Olsen B., Ninomiya Y. The complete primary structure of the human a1(VIII) chain and assignment of its gene (COL8A1) to chromosome 3. Eur. J. Biochem. 197:1991;615-622.
19. Nakano Y., Tobe T., Choi-Miura N.H., Mazda T., Tomita M. Isolation and characterization of GBP28, a novel gelatin-binding protein purified from human plasma. J. Biochem. 120:1996;803-812.
20. Naora H., Deacon N.J. Relationship between total size of exons and introns in protein-coding genes of higher eukaryotes. Proc. Natl. Acad. Sci. USA. 79:1982;6196-6200.
21. O'Shea-Greenfield A., Smale S.T. Role of TATA and initiator elements in determining the start site location and direction of RNA polymerase II transcription. J. Biol. Chem. 267:1992;1391-1401.
22. Quandt K., Frech K., Karas H., Wingender E., Werner T. MatInd MatInspector - new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884.
23. Ron D., Habener J.F. CHOP, a novel developmentally regulated nuclear protein that dimerizes with transcription factors C/EBP and LAP and functions as a dominant-negative inhibitor of gene transcription. Genes Dev. 6:1992;439-453.
24. Roy A.L., Meisterernst M., Pognonec P., Roeder R.G. Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF. Nature. 354:1991;245-248.
25. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
26. Sehgal A., Patil N., Chao M. A constitutive promoter directs expression of the nerve growth factor receptor gene. Mol. Cell. Biol. 8:1988;3160-3167.
27. Seo S.J., Kang S.S., Cho G., Rho H.M., Jung G. C/EBPα and C/EBPβ play similar roles in the transcription of the human Cu/Zn SOD gene. Gene. 203:1997;11-15.
28. Seto E., Shi Y., Shenk T. YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro. Nature. 354:1991;241-245.
29. Smale S.T., Baltimore D. The initiator as a transcription control element. Cell. 57:1989;103-113.
30. Thomas J.T., Cresswell C.J., Rash B., Nicolai H., Jones T., Solomon E., Grant M.E., Boot-Handford R.P. The human collagen X gene. Biochem. J. 280:1991;617-623.
31. Vinson C.R., Hai T., Boyd S.M. Dimerization specificity of the leucine zipper-containing bZIP motif of DNA binding prediction and rational design. Genes Dev. 7:1993;1047-1058.
32. Weis L., Reinberg D. Transcription by RNA polymerase II: Initiator-directed formation of transcription-competent complexes. FASEB J. 6:1992;3300-3309.
33. Wight P.A., Dobretsova A. The first intron of the myelin proteolipid protein gene confers cell type-specific expression by a transcriptional repression mechanism in non-expressing cell types. Gene. 201:1997;111-117.
34. Wight P.A., Duchala C.S., Readhead C., Macklin W.B. A myelin proteolipid protein-lacZ fusion protein is developmentally regulated and targeted to the myelin membrane in transgenic mice. J. Cell Biol. 123:1993;443-454.
35. Williams S.C., Cantwell C.A., Johnson P.F. A family of C/EBP-related proteins capable of forming covalently linked leucine zipper dimers in vitro. Genes Dev. 5:1991;1553-1567.