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Volumn 292, Issue 2, 1999, Pages 229-239

Systematic analysis of σ54 N-terminal sequences identifies regions involved in positive and negative regulation of transcription

Author keywords

Bacterial enhancers; Sigma factors; Transcription regulation; 54

Indexed keywords

HEPARIN; MUTANT PROTEIN; SIGMA FACTOR; BACTERIAL DNA; DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE; ESCHERICHIA COLI PROTEIN; OLIGODEOXYRIBONUCLEOTIDE; RPON PROTEIN, E COLI; SIGMA FACTOR RPON; TRANSCRIPTION FACTOR;

EID: 0033578493     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3076     Document Type: Article
Times cited : (31)

References (50)
  • 1
    • 0026581288 scopus 로고
    • The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent
    • Austin S., Dixon R. The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent. EMBO J. 11:1992;2219-2228.
    • (1992) EMBO J. , vol.11 , pp. 2219-2228
    • Austin, S.1    Dixon, R.2
  • 2
    • 0025735568 scopus 로고
    • Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NtrC on its positive control function
    • Austin S., Kundrot C., Dixon R. Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NtrC on its positive control function. Nucl. Acids Res. 19:1991;2281-2287.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 2281-2287
    • Austin, S.1    Kundrot, C.2    Dixon, R.3
  • 3
    • 0026729012 scopus 로고
    • Specific binding of the transcription factor sigma-54 to promoter DNA
    • Buck M., Cannon W. Specific binding of the transcription factor sigma-54 to promoter DNA. Nature. 358:1992;422-424.
    • (1992) Nature , vol.358 , pp. 422-424
    • Buck, M.1    Cannon, W.2
  • 4
    • 0022545682 scopus 로고
    • Upstream activator sequences are present in the promoters of nitrogen-fixation genes
    • Buck M., Miller S., Drummond M., Dixon R. Upstream activator sequences are present in the promoters of nitrogen-fixation genes. Nature. 320:1986;374-378.
    • (1986) Nature , vol.320 , pp. 374-378
    • Buck, M.1    Miller, S.2    Drummond, M.3    Dixon, R.4
  • 5
    • 0026633194 scopus 로고
    • Central domain of the positive control protein NifA and its role in transcriptional activation
    • Cannon W., Buck M. Central domain of the positive control protein NifA and its role in transcriptional activation. J. Mol. Biol. 225:1992;271-286.
    • (1992) J. Mol. Biol. , vol.225 , pp. 271-286
    • Cannon, W.1    Buck, M.2
  • 6
    • 0029029993 scopus 로고
    • Core RNA polymerase and promoter DNA interactions of purified domains of sigma N: Bipartite functions
    • Cannon W., Missailidis S., Smith C., Cottier A., Austin S., Moore M., Buck M. Core RNA polymerase and promoter DNA interactions of purified domains of sigma N: bipartite functions. J. Mol. Biol. 248:1995;781-803.
    • (1995) J. Mol. Biol. , vol.248 , pp. 781-803
    • Cannon, W.1    Missailidis, S.2    Smith, C.3    Cottier, A.4    Austin, S.5    Moore, M.6    Buck, M.7
  • 7
    • 0030612601 scopus 로고    scopus 로고
    • Two domains within sigma-N (sigma 54) cooperate for DNA binding
    • Cannon W. V., Chaney M. K., Wang X., Buck M. Two domains within sigma-N (sigma 54) cooperate for DNA binding. Proc. Natl Acad. Sci. USA. 94:1997;5006-5011.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 5006-5011
    • Cannon, W.V.1    Chaney, M.K.2    Wang, X.3    Buck, M.4
  • 9
    • 0030693382 scopus 로고    scopus 로고
    • Probing the assembly of transcription initiation complexes through changes in sigma-N protease sensitivity
    • Casaz P., Buck M. Probing the assembly of transcription initiation complexes through changes in sigma-N protease sensitivity. Proc. Natl Acad. Sci. USA. 94:1997;12145-12150.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12145-12150
    • Casaz, P.1    Buck, M.2
  • 10
    • 0033555643 scopus 로고    scopus 로고
    • 54within the holoenzyme
    • 54within the holoenzyme. J. Mol. Biol. 285:1999;507-514.
    • (1999) J. Mol. Biol. , vol.285 , pp. 507-514
    • Casaz, P.1    Buck, M.2
  • 11
    • 0032854067 scopus 로고    scopus 로고
    • 54DNA binding domain includes a determinant of enhancer responsiveness
    • 54DNA binding domain includes a determinant of enhancer responsiveness. Mol. Microbiol. In the press:1999.
    • (1999) Mol. Microbiol.
    • Chaney, M.1    Buck, M.2
  • 12
    • 0026003072 scopus 로고
    • Control site location and transcriptional regulation in Escherichia coli
    • Collado-Vides J., Magasanik B., Gralla J. D. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55:1991;371-394.
    • (1991) Microbiol. Rev. , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 13
    • 0029094575 scopus 로고
    • Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA
    • deHaseth P. L., Helmann J. D. Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA. Mol. Microbiol. 16:1995;817-824.
    • (1995) Mol. Microbiol. , vol.16 , pp. 817-824
    • Dehaseth, P.L.1    Helmann, J.D.2
  • 15
    • 0032588981 scopus 로고    scopus 로고
    • ndetermining holoenzyme formation and properties
    • Ndetermining holoenzyme formation and properties. J. Mol. Biol. 288:1999;539-553.
    • (1999) J. Mol. Biol. , vol.288 , pp. 539-553
    • Gallegos, M.T.1    Buck, M.2
  • 17
    • 0031046662 scopus 로고    scopus 로고
    • 54as deduced from libraries of mutations
    • 54as deduced from libraries of mutations. J. Bacteriol. 179:1997;1239-1245.
    • (1997) J. Bacteriol. , vol.179 , pp. 1239-1245
    • Guo, Y.1    Gralla, J.D.2
  • 18
    • 0025012093 scopus 로고
    • The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons
    • Hoover T. R., Santero E., Porter S., Kustu S. The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons. Cell. 63:1990;11-22.
    • (1990) Cell , vol.63 , pp. 11-22
    • Hoover, T.R.1    Santero, E.2    Porter, S.3    Kustu, S.4
  • 20
    • 0028085082 scopus 로고
    • Functional roles for the glutamines within the glutamine-rich region of the transcription factor sigma 54
    • Hsieh M., Tintut Y., Gralla J. D. Functional roles for the glutamines within the glutamine-rich region of the transcription factor sigma 54. J. Biol. Chem. 269:1994;373-378.
    • (1994) J. Biol. Chem. , vol.269 , pp. 373-378
    • Hsieh, M.1    Tintut, Y.2    Gralla, J.D.3
  • 21
    • 0029810991 scopus 로고    scopus 로고
    • Regulation of RNA polymerase subunit synthesis in Escherichia coli: Intracellular levels of four species of sigma subunit under various growth conditions
    • Jishage M., Iwata A., Ueda S., Ishihama A. Regulation of RNA polymerase subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J. Bacteriol. 178:1996;5447-5451.
    • (1996) J. Bacteriol. , vol.178 , pp. 5447-5451
    • Jishage, M.1    Iwata, A.2    Ueda, S.3    Ishihama, A.4
  • 22
    • 0029874910 scopus 로고    scopus 로고
    • Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon
    • Jovanovic G., Weiner L., Model P. Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon. J. Bacteriol. 178:1996;1936-1945.
    • (1996) J. Bacteriol. , vol.178 , pp. 1936-1945
    • Jovanovic, G.1    Weiner, L.2    Model, P.3
  • 23
    • 0024728119 scopus 로고
    • Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism
    • Kustu S., Santero E., Keener J., Popham D., Weiss D. Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol. Rev. 53:1989;367-376.
    • (1989) Microbiol. Rev. , vol.53 , pp. 367-376
    • Kustu, S.1    Santero, E.2    Keener, J.3    Popham, D.4    Weiss, D.5
  • 24
    • 0028839628 scopus 로고
    • Protein crosslinking studies suggest that Rhizobium meliloti C4-dicarboxylic acid transport protein D, a sigma 54-dependent transcriptional activator, interacts with sigma 54 and the beta subunit of RNA polymerase
    • Lee J. H., Hoover T. R. Protein crosslinking studies suggest that Rhizobium meliloti C4-dicarboxylic acid transport protein D, a sigma 54-dependent transcriptional activator, interacts with sigma 54 and the beta subunit of RNA polymerase. Proc. Natl Acad. Sci. USA. 92:1995;9702-9706.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 9702-9706
    • Lee, J.H.1    Hoover, T.R.2
  • 25
    • 0026612797 scopus 로고
    • The sigma 70 family: Sequence conservation and evolutionary relationships
    • Lonetto M., Gribskov M., Gross C. A. The sigma 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174:1992;3843-3849.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 26
    • 0032545186 scopus 로고    scopus 로고
    • Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma 70 subunit
    • Lonetto M. A., Rhodius R., Lamberg K., Kiley P., Busby S., Gross C. Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma 70 subunit. J. Mol. Biol. 284:1998;1353-1365.
    • (1998) J. Mol. Biol. , vol.284 , pp. 1353-1365
    • Lonetto, M.A.1    Rhodius, R.2    Lamberg, K.3    Kiley, P.4    Busby, S.5    Gross, C.6
  • 27
    • 0030915128 scopus 로고    scopus 로고
    • Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
    • Marr M. T., Roberts J. W. Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide. Science. 276:1997;1258-1260.
    • (1997) Science , vol.276 , pp. 1258-1260
    • Marr, M.T.1    Roberts, J.W.2
  • 28
    • 0027770723 scopus 로고
    • In a class of its own-the RNA polymerase sigma factor sigma 54 (sigma N)
    • Merrick M. J. In a class of its own-the RNA polymerase sigma factor sigma 54 (sigma N). Mol. Microbiol. 10:1993;903-909.
    • (1993) Mol. Microbiol. , vol.10 , pp. 903-909
    • Merrick, M.J.1
  • 29
    • 0024449796 scopus 로고
    • In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae andRhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex
    • Morett E., Buck M. In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae andRhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex. J. Mol. Biol. 210:1989;65-77.
    • (1989) J. Mol. Biol. , vol.210 , pp. 65-77
    • Morett, E.1    Buck, M.2
  • 30
    • 0030602821 scopus 로고    scopus 로고
    • ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA
    • Pérez-Martin J., de Lorenzo V. ATP binding to the sigma 54-dependent activator XylR triggers a protein multimerization cycle catalyzed by UAS DNA. Cell. 86:1996;331-339.
    • (1996) Cell , vol.86 , pp. 331-339
    • Pérez-Martin, J.1    De Lorenzo, V.2
  • 31
    • 0024598928 scopus 로고
    • Function of a bacterial activator protein that binds to transcriptional enhancers
    • Popham D. L., Szeto D., Keener J., Kustu S. Function of a bacterial activator protein that binds to transcriptional enhancers. Science. 243:1989;629-635.
    • (1989) Science , vol.243 , pp. 629-635
    • Popham, D.L.1    Szeto, D.2    Keener, J.3    Kustu, S.4
  • 32
    • 0027359777 scopus 로고
    • Oligomerization of NtrC at the glnA enhancer is required for transcriptional activation
    • Porter S. C., North A. K., Wedel A. B., Kustu S. Oligomerization of NtrC at the glnA enhancer is required for transcriptional activation. Genes Dev. 7:1993;2258-2273.
    • (1993) Genes Dev. , vol.7 , pp. 2258-2273
    • Porter, S.C.1    North, A.K.2    Wedel, A.B.3    Kustu, S.4
  • 33
    • 0022446209 scopus 로고
    • Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
    • Reitzer L. J., Magasanik B. Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell. 45:1986;785-792.
    • (1986) Cell , vol.45 , pp. 785-792
    • Reitzer, L.J.1    Magasanik, B.2
  • 35
    • 0027291015 scopus 로고
    • Prediction of protein structure at better than 70 % accuracy
    • Rost B., Sander C. Prediction of protein structure at better than 70 % accuracy. J. Mol. Biol. 232:1993;584-599.
    • (1993) J. Mol. Biol. , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 36
    • 0348026706 scopus 로고
    • Probing the Escherichia coli glnALG upstream activation mechanism in vivo
    • Sasse-Dwight S., Gralla J. D. Probing the Escherichia coli glnALG upstream activation mechanism in vivo. Proc. Natl Acad. Sci. USA. 85:1988;8934-8938.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 8934-8938
    • Sasse-Dwight, S.1    Gralla, J.D.2
  • 37
    • 0025180626 scopus 로고
    • Role of eukaryotic-type functional domains found in the prokaryotic enhancer receptor factor sigma 54
    • Sasse-Dwight S., Gralla J. D. Role of eukaryotic-type functional domains found in the prokaryotic enhancer receptor factor sigma 54. Cell. 62:1990;945-954.
    • (1990) Cell , vol.62 , pp. 945-954
    • Sasse-Dwight, S.1    Gralla, J.D.2
  • 38
    • 0025035371 scopus 로고
    • DNA-looping and enhancer activity: Association between DNA-bound NtrC activator and RNA polymerase at the bacterialglnA promoter
    • Su W., Porter S., Kustu S., Echols H. DNA-looping and enhancer activity: association between DNA-bound NtrC activator and RNA polymerase at the bacterialglnA promoter. Proc. Natl Acad. Sci. USA. 87:1990;5504-5508.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 5504-5508
    • Su, W.1    Porter, S.2    Kustu, S.3    Echols, H.4
  • 39
    • 0020663424 scopus 로고
    • Klebsiella pneumoniae nifA product activates the Rhizobium meliloti nitrogenase promoter
    • Sundaresan V., Jones J. D., Ow D. W., Ausubel F. M. Klebsiella pneumoniae nifA product activates the Rhizobium meliloti nitrogenase promoter. Nature. 301:1983;728-732.
    • (1983) Nature , vol.301 , pp. 728-732
    • Sundaresan, V.1    Jones, J.D.2    Ow, D.W.3    Ausubel, F.M.4
  • 40
    • 0031028731 scopus 로고    scopus 로고
    • Isolation and properties of enhancer-bypass mutants of sigma 54
    • Syed A., Gralla J. D. Isolation and properties of enhancer-bypass mutants of sigma 54. Mol. Microbiol. 23:1997;987-995.
    • (1997) Mol. Microbiol. , vol.23 , pp. 987-995
    • Syed, A.1    Gralla, J.D.2
  • 41
    • 0031740419 scopus 로고    scopus 로고
    • Identification of an N-terminal region of sigma 54 required for enhancer responsiveness
    • Syed A., Gralla J. D. Identification of an N-terminal region of sigma 54 required for enhancer responsiveness. J. Bacteriol. 180:1998;5619-5625.
    • (1998) J. Bacteriol. , vol.180 , pp. 5619-5625
    • Syed, A.1    Gralla, J.D.2
  • 42
    • 0030984217 scopus 로고    scopus 로고
    • Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: Roles for DNA and protein determinants
    • Wang J. T., Syed A., Gralla J. D. Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: roles for DNA and protein determinants. Proc. Natl Acad. Sci. USA. 94:1997;9538-9543.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 9538-9543
    • Wang, J.T.1    Syed, A.2    Gralla, J.D.3
  • 43
    • 0030447463 scopus 로고    scopus 로고
    • The transcription initiation pathway of sigma 54 mutants that bypass the enhancer protein requirement
    • Wang J. T., Gralla J. D. The transcription initiation pathway of sigma 54 mutants that bypass the enhancer protein requirement. J. Biol. Chem. 271:1996;32707-32713.
    • (1996) J. Biol. Chem. , vol.271 , pp. 32707-32713
    • Wang, J.T.1    Gralla, J.D.2
  • 45
    • 0031740289 scopus 로고    scopus 로고
    • Multiple in vivo roles for the -12-region elements of sigma 54 promoters
    • Wang L., Gralla J. D. Multiple in vivo roles for the -12-region elements of sigma 54 promoters. J. Bacteriol. 180:1998;5626-5631.
    • (1998) J. Bacteriol. , vol.180 , pp. 5626-5631
    • Wang, L.1    Gralla, J.D.2
  • 46
    • 0029166594 scopus 로고
    • The bacterial enhancer-binding protein NtrC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation
    • Wedel A., Kustu S. The bacterial enhancer-binding protein NtrC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation. Genes Dev. 9:1995;2042-2052.
    • (1995) Genes Dev. , vol.9 , pp. 2042-2052
    • Wedel, A.1    Kustu, S.2
  • 47
    • 0025361357 scopus 로고
    • A bacterial enhancer functions to tether a transcriptional activator near a promoter
    • Wedel A., Weiss D. S., Popham D., Droge P., Kustu S. A bacterial enhancer functions to tether a transcriptional activator near a promoter. Science. 248:1990;486-490.
    • (1990) Science , vol.248 , pp. 486-490
    • Wedel, A.1    Weiss, D.S.2    Popham, D.3    Droge, P.4    Kustu, S.5
  • 48
    • 0026070143 scopus 로고
    • The phosphorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription
    • Weiss D. S., Batut J., Klose K. E., Keener J., Kustu S. The phosphorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription. Cell. 67:1991;155-167.
    • (1991) Cell , vol.67 , pp. 155-167
    • Weiss, D.S.1    Batut, J.2    Klose, K.E.3    Keener, J.4    Kustu, S.5
  • 49
    • 0028316752 scopus 로고
    • The domain structure of sigma 54 as determined by analysis of a set of deletion mutants
    • Wong C., Tintut Y., Gralla J. D. The domain structure of sigma 54 as determined by analysis of a set of deletion mutants. J. Mol. Biol. 236:1994;81-90.
    • (1994) J. Mol. Biol. , vol.236 , pp. 81-90
    • Wong, C.1    Tintut, Y.2    Gralla, J.D.3
  • 50
    • 0030894489 scopus 로고    scopus 로고
    • Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein
    • Wyman C., Rombel I., North A. K., Bustamante C., Kustu S. Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein. Science. 275:1997;1658-1661.
    • (1997) Science , vol.275 , pp. 1658-1661
    • Wyman, C.1    Rombel, I.2    North, A.K.3    Bustamante, C.4    Kustu, S.5


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