Structural and dynamical properties of a partially unfolded Fe4S4 protein: Role of the cofactor in protein folding

Biochemistry

Volumn 38, Issue 15, 1999, Pages 4669-4680

  Bentrop, Detlef ^a   Bertini, Ivano ^a   Iacoviello, Rita ^a   Luchinat, Claudio ^a   Niikura, Yohei ^a   Piccioli, Mario ^a   Presenti, Chiara ^a   Rosato, Antonio ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

IRON SULFUR PROTEIN;

ARTICLE; CHROMATIUM; CONFORMATIONAL TRANSITION; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NONHUMAN; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN FOLDING; PROTON NUCLEAR MAGNETIC RESONANCE;

IRON-SULFUR PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; RECOMBINANT PROTEINS;

ALLOCHROMATIUM VINOSUM; CHROMATIUM;

EID: 0033551108     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982647q     Document Type: Article

References (63)

1. Bertini, I., Cowan, J. A., Luchinat, C., Natarajan, K., and Piccioli, M. (1997) Biochemistry 36, 9332-9339.
2. Bertini, I., Ciurli, S., and Luchinat, C. (1995) Struct. Bonding 83, 1-54.
3. Capozzi, F., Ciurli, S., and Luchinat, C. (1998) Struct. Bonding 90, 127-160.
4. Cowan, J. A., and Lui, S. M. (1998) Adv. Inorg. Chem. 45, 313-350.
5. Bertini, I., Luchinat, C., Piccioli, M., and Soriano, A. (1998) Inorg. Chim. Acta 283, 12-16.
6. Shortle, D. R. (1996) Curr. Opin. Struct. Biol. 6, 24-30.
7. Barbar, E., Hare, M., Daragan, V., Barany, G., and Woodward, C. (1998) Biochemistry 37, 7822-7833.
8. Dyson, H. J., and Wright, P. E. (1998) Nat. Struct. Biol. 5, 499-503.
9. Wong, K. B., Freund, S. M. V., and Fersht, A. R. (1996) J. Mol. Biol. 259, 805-818.
10. Buck, M., Schwalbe, H., and Dobson, C. M. (1995) Biochemistry 34, 13219-13232.
11. Pascher, T., Chesick, J. P., Winkler, J. R., and Gray, H. B. (1996) Science 271, 1558-1560.
12. Bian, S., and Cowan, J. A. (1998) J. Am. Chem. Soc. 120, 3532-3533.
13. Winkler, J. R., Wittung, P., Leckner, J., Malmström, B. G., and Gray, H. B. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 4246-4249.
14. Bertini, I., Luchinat, C., and Rosato, A. (1996) Prog. Biophys. Mol. Biol. 66, 43-80.
15. Babini, E., Bertini, I., Borsari, M., Capozzi, F., Dikiy, A., Eltis, L. D., and Luchinat, C. (1996) J. Am. Chem. Soc. 118, 75-80.
16. Eltis, L. D., Iwagami, S. G., and Smith, M. (1994) Protein Eng. 7, 1145-1150.
17. Johnson, R. D., Ramaprasad, S., and La Mar, G. N. (1983) J. Am. Chem. Soc. 105, 7205-7206.
18. Banci, L., Bertini, I., Luchinat, C., Piccioli, M., Scozzafava, A., and Turano, P. (1989) Inorg. Chem. 28, 4650-4656.
19. Sklenar, V., Piotto, M., Leppik, R., and Saudek, V. (1993) J. Magn. Reson., Ser. A 102, 241-245.
20. Vuister, G. W., and Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777.
21. Wider, G., Macura, S., Kumar, A., Ernst, R. R., and Wüthrich, K. (1984) J. Magn. Reson. 56, 207-234.
22. Peng, J. W., and Wagner, G. (1992) J. Magn. Reson. 98, 308-332.
23. Kay, L. E., Nicholson, L. K., Delaglio, F., Bax, A., and Torchia, D. A. (1992) J. Magn. Reson. 97, 359-375.
24. Kay, L. E., Torchia, D. A., and Bax, A. (1989) Biochemistry 28, 8972-8979.
25. Marion, D., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
26. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W., and Bax, A. (1992) Biochemistry 31, 5269-5278.
27. Eccles, C., Güntert, P., Billeter, M., and Wüthrich, K. (1991) J. Biomol. NMR 1, 111-130.
28. Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
29. Güntert, P., Braun, W., and Wüthrich, K. (1991) J. Mol. Biol. 217, 517-530.
30. Wüthrich, K. (1986) in NMR of Proteins and Nucleic Acids, Wiley, New York.
31. Bertini, I., and Luchinat, C. (1996) in NMR of paramagnetic substances, Coordination Chemistry Review 150, Elsevier, Amsterdam.
32. Banci, L., Bertini, I., Dikiy, A., Kastrau, D. H. W., Luchinat, C., and Sompornpisut, P. (1995) Biochemistry 34, 206-219.
33. Bertini, I., Capozzi, F., Luchinat, C., Piccioli, M., and Vila, A. J. (1994) J. Am. Chem. Soc. 116, 651-660.
34. Davy, S. L., Osborne, M. J., Breton, J., Moore, G. R., Thomson, A. J., Bertini, I., and Luchinat, C. (1995) FEBS Lett. 363, 199-204.
35. Bertini, I., Couture, M. M. J., Donaire, A., Eltis, L. D., Felli, I. C., Luchinat, C., Piccioli, M., and Rosato, A. (1996) Eur. J. Biochem. 241, 440-452.
36. Marquardt, D. W. (1963) J. Soc. Ind. Appl. Math. 11, 431-441.
37. Press, W. H., Flannery, B. P., Teukolsky, S. A., and Vetterling, W. T. (1988) in Numerical Recipes in C - The Art of Scientific Computing, Cambridge University Press, New York.
38. Palmer, A. G., III, Rance, M., and Wright, P. E. (1991) J. Am. Chem. Soc. 113, 4371-4380.
39. Peng, J. W., and Wagner, G. (1992) Biochemistry 31, 8571-8586.
40. Zinn-Justin, S., Berthault, P., Guenneugues, M., and Desvaux, H. (1997) J. Biomol. NMR 10, 363-372.
41. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4546-4559.
42. Davis, D. G., Perlman, M. E., and London, R. E. (1994) J. Magn. Reson., Ser. B 104, 266-275.
43. Desvaux, H., Birlirakis, N., Wary, C., and Berthault, P. (1995) Mol. Phys. 86, 1059-1073.
44. James, T. L., Matson, G. B., Kuntz, I. D., and Fisher, R. W. (1977) J. Magn. Reson. 28, 417-426.
45. Akke, M., and Palmer, A. G., III (1996) J. Am. Chem. Soc. 118, 911-912.
46. Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S., and Sykes, B. D. (1995) J. Biomol. NMR 5, 67-81.
47. Schwalbe, H., Fiebig, K. M., Buck, M., Jones, J. A., Grimshaw, S. B., Spencer, A., Glaser, S. J., Smith, L. J., and Dobson, C. M. (1997) Biochemistry 36, 8977-8991.
48. Bertini, I., Donaire, A., Feinberg, B. A., Luchinat, C., Piccioli, M., and Yuan, H. (1995) Eur. J. Biochem. 232, 192-205.
49. Wang, P. L., Donaire, A., Zhou, Z. H., Adams, M. W. W., and La Mar, G. N. (1996) Biochemistry 35, 11319-11328.
50. Aono, S., Bentrop, D., Bertini, I., Donaire, A., Luchinat, C., Niikura, Y., and Rosato, A. (1998) Biochemistry 37, 9812-9826.
51. Abragam, A. (1961) in The Principles of Nuclear Magnetism, Oxford University Press, Oxford, England.
52. Mandel, M. A., Akke, M., and Palmer, A. G., III (1995) J. Mol. Biol. 246, 144-163.
53. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989-4991.
54. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1995) Biochemistry 34, 868-878.
55. Buck, M., Schwalbe, H., and Dobson, C. M. (1996) J. Mol. Biol. 257, 669-683.
56. Peng, J. W., and Wagner, G. (1995) Biochemistry 34, 16733-16752.
57. Deverell, C., Morgan, R. E., and Strange, J. H. (1970) Mol. Phys. 18, 553-559.
58. Wennerström, H. (1972) Mol Phys. 1, 69-80.
59. Redfield, C., Smith, R. A. G., and Dobson, C. M. (1994) Nat. Struct. Biol. 1, 23-29.
60. Szyperski, T., Luginbuhl, P., Otting, G., Güntert, P., and Wüthrich, K. (1993) J. Biomol. NMR 3, 151-164.
61. Natarajan, K., and Cowan, J. A. (1997) J. Am. Chem. Soc. 119, 4082-4083.
62. Carter, C. W. J., Kraut, J., Freer, S. T., Xuong, N.-H., Alden, R. A., and Bartsch, R. G. (1974) J. Biol. Chem. 249, 4212-4215.
63. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.