메뉴 건너뛰기




Volumn 294, Issue 4, 1999, Pages 981-995

The energetics of HMG box interactions with DNA: Thermodynamic description of the target DNA duplexes

Author keywords

Association; DNA duplex; Enthalpy; Heat capacity; Oligonucleotides

Indexed keywords

DOUBLE STRANDED DNA; HIGH MOBILITY GROUP PROTEIN;

EID: 0033544722     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3284     Document Type: Article
Times cited : (81)

References (28)
  • 1
    • 0002659517 scopus 로고
    • Thermodynamic data for biochemistry and biotechnology
    • H.-Z. Hinz. Berlin: Springer-Verlag
    • Breslauer K. J. Thermodynamic data for biochemistry and biotechnology. Hinz H.-Z. Thermodynamic Data for Biochemistry and Biotechnology. 1986;402-427 Springer-Verlag, Berlin.
    • (1986) Thermodynamic Data for Biochemistry and Biotechnology , pp. 402-427
    • Breslauer, K.J.1
  • 2
    • 0029100232 scopus 로고
    • Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions
    • Breslauer K. J. Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions. Methods Enzymol. 259:1995;221-243.
    • (1995) Methods Enzymol. , vol.259 , pp. 221-243
    • Breslauer, K.J.1
  • 3
    • 0028222102 scopus 로고
    • Influence of base composition, base sequence, and duplex structure on DNA hydration: Apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25 °c
    • Chalikian T. V., Sarvazian A. P., Plum E., Breslauer K. Influence of base composition, base sequence, and duplex structure on DNA hydration: Apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25 °C. Biochemistry. 33:1994;2394-2401.
    • (1994) Biochemistry , vol.33 , pp. 2394-2401
    • Chalikian, T.V.1    Sarvazian, A.P.2    Plum, E.3    Breslauer, K.4
  • 4
    • 0033529318 scopus 로고    scopus 로고
    • A more unified picture for the thermodynamics of nucleic acid duplex melting; A characterization by calorimetry and volumetric techniques
    • Chalikian T. V., Volker J., Plum G. E., Breslauer K. J. A more unified picture for the thermodynamics of nucleic acid duplex melting; A characterization by calorimetry and volumetric techniques. Proc. Natl Acad. Sci. USA. 96:1999;7853-7858.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 7853-7858
    • Chalikian, T.V.1    Volker, J.2    Plum, G.E.3    Breslauer, K.J.4
  • 5
    • 0032575767 scopus 로고    scopus 로고
    • The energetics of HMG box interactions with DNA. Thermodynamic description of the box from mouse Sox-5
    • Crane-Robinson C., Read C. M., Cary P. D., Driscoll P. C., Dragan A. I., Privalov P. L. The energetics of HMG box interactions with DNA. Thermodynamic description of the box from mouse Sox-5. J. Mol. Biol. 281:1998;705-717.
    • (1998) J. Mol. Biol. , vol.281 , pp. 705-717
    • Crane-Robinson, C.1    Read, C.M.2    Cary, P.D.3    Driscoll, P.C.4    Dragan, A.I.5    Privalov, P.L.6
  • 7
    • 0000616995 scopus 로고
    • Apparent molar heat capacities of amino acids and other organic compounds
    • Edsall J. T. Apparent molar heat capacities of amino acids and other organic compounds. J. Am. Chem. Soc. 57:1935;1506-1507.
    • (1935) J. Am. Chem. Soc. , vol.57 , pp. 1506-1507
    • Edsall, J.T.1
  • 8
    • 0002673697 scopus 로고
    • The thermodynamics of conformation transitions in polynucleotides
    • H.-Z. Hinz. Berlin: Springer-Verlag
    • Filimonov V. V. The thermodynamics of conformation transitions in polynucleotides. Hinz H.-Z. Thermodynamic Data for Biochemistry and Biotechnology. 1986;377-401 Springer-Verlag, Berlin.
    • (1986) Thermodynamic Data for Biochemistry and Biotechnology , pp. 377-401
    • Filimonov, V.V.1
  • 10
    • 0033614819 scopus 로고    scopus 로고
    • Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: Interpretation in terms of coupled processes of formation and association of single-stranded helices
    • Holbrook J. A., Capp M. W., Saecker R. M., Record M. T. Jr. Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices. Biochemistry. 38:1999;8409-8422.
    • (1999) Biochemistry , vol.38 , pp. 8409-8422
    • Holbrook, J.A.1    Capp, M.W.2    Saecker, R.M.3    Record M.T., Jr.4
  • 12
    • 0028352041 scopus 로고
    • The thermodynamics of formation of three-strand, DNA three-way junction complex
    • Ladbury J. E., Sturtevant J. M., Leontis N. B. The thermodynamics of formation of three-strand, DNA three-way junction complex. Biochemistry. 33:1994;6828-6833.
    • (1994) Biochemistry , vol.33 , pp. 6828-6833
    • Ladbury, J.E.1    Sturtevant, J.M.2    Leontis, N.B.3
  • 13
    • 0025906146 scopus 로고
    • The contribution to the thermodynamics of protein folding from the reduction in water accessible non-polar surface area
    • Livingstone J. R., Spolar R. S., Record M. T. Jr. The contribution to the thermodynamics of protein folding from the reduction in water accessible non-polar surface area. Biochemistry. 30:1991;4237-4244.
    • (1991) Biochemistry , vol.30 , pp. 4237-4244
    • Livingstone, J.R.1    Spolar, R.S.2    Record M.T., Jr.3
  • 15
    • 0025360593 scopus 로고
    • Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solutions. Hydration effect
    • Makhatadze G. I., Privalov P. L. Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solutions. Hydration effect. J. Mol. Biol. 213:1990;375-384.
    • (1990) J. Mol. Biol. , vol.213 , pp. 375-384
    • Makhatadze, G.I.1    Privalov, P.L.2
  • 17
    • 0015274187 scopus 로고
    • On the application of polyelectrolyte "limiting laws" to the helix-coil transition of DNA. 1. Excess univalent cations
    • Manning G. S. On the application of polyelectrolyte "limiting laws" to the helix-coil transition of DNA. 1. Excess univalent cations. Biopolymers. 11:1972;937-949.
    • (1972) Biopolymers , vol.11 , pp. 937-949
    • Manning, G.S.1
  • 18
    • 0023406843 scopus 로고
    • Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
    • Marky L. A., Breslauer K. J. Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers. 26:1987;1601-1620.
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 19
    • 0026344361 scopus 로고
    • Solid model compounds and the thermodynamics of protein unfolding
    • Murphy K. P., Gill S. J. Solid model compounds and the thermodynamics of protein unfolding. J. Mol. Biol. 222:1991;699-709.
    • (1991) J. Mol. Biol. , vol.222 , pp. 699-709
    • Murphy, K.P.1    Gill, S.J.2
  • 20
    • 0028845120 scopus 로고
    • Precise scanning calorimetry for studying thermal properties of biological macromolecules in dilute solution
    • Privalov G., Kavina V., Friere E., Privalov P. L. Precise scanning calorimetry for studying thermal properties of biological macromolecules in dilute solution. Anal. Biochem. 232:1995;79-85.
    • (1995) Anal. Biochem. , vol.232 , pp. 79-85
    • Privalov, G.1    Kavina, V.2    Friere, E.3    Privalov, P.L.4
  • 21
    • 0024199422 scopus 로고
    • Stability of protein structure and hydrophobic interactions
    • Privalov P. L., Gill S. J. Stability of protein structure and hydrophobic interactions. Advan. Protein Chem. 39:1988;191-234.
    • (1988) Advan. Protein Chem. , vol.39 , pp. 191-234
    • Privalov, P.L.1    Gill, S.J.2
  • 22
    • 0022555893 scopus 로고
    • Scanning microcalorimetry in studying temperature-induced changes in proteins
    • Privalov P. L., Potekhin S. A. Scanning microcalorimetry in studying temperature-induced changes in proteins. Methods Enzymol. 131:1986;4-51.
    • (1986) Methods Enzymol. , vol.131 , pp. 4-51
    • Privalov, P.L.1    Potekhin, S.A.2
  • 23
    • 84984087761 scopus 로고
    • Determination of stability of the DNA double helix in an aqueous medium
    • Privalov P. L., Ptitsyn O. B., Birstein T. M. Determination of stability of the DNA double helix in an aqueous medium. Biopolymers. 8:1969;559-571.
    • (1969) Biopolymers , vol.8 , pp. 559-571
    • Privalov, P.L.1    Ptitsyn, O.B.2    Birstein, T.M.3
  • 24
    • 0033544727 scopus 로고    scopus 로고
    • The energetics of HMG box interactions with DNA. Thermodynamics of the DNA binding of the HMG box from mouse Sox-5
    • Privalov P. L., Jelesarov I., Read C. M., Dragan A. I., Crane-Robinson C. The energetics of HMG box interactions with DNA. Thermodynamics of the DNA binding of the HMG box from mouse Sox-5. J. Mol. Biol. 294:1999;997-1013.
    • (1999) J. Mol. Biol. , vol.294 , pp. 997-1013
    • Privalov, P.L.1    Jelesarov, I.2    Read, C.M.3    Dragan, A.I.4    Crane-Robinson, C.5
  • 25
    • 0026684671 scopus 로고
    • Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
    • Spolar R. S., Livingstone J. R., Record M. T. Jr. Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water. Biochemistry. 31:1992;3947-3955.
    • (1992) Biochemistry , vol.31 , pp. 3947-3955
    • Spolar, R.S.1    Livingstone, J.R.2    Record M.T., Jr.3
  • 26
    • 0031567782 scopus 로고    scopus 로고
    • The entropy cost of protein association
    • Tamura A., Privalov P. L. The entropy cost of protein association. J. Mol. Biol. 273:1997;1048-1060.
    • (1997) J. Mol. Biol. , vol.273 , pp. 1048-1060
    • Tamura, A.1    Privalov, P.L.2
  • 27
    • 0025875214 scopus 로고
    • The contribution of DNA single-stranded order to the thermodynamics of duplex formation
    • Vesnaver G., Breslauer K. J. The contribution of DNA single-stranded order to the thermodynamics of duplex formation. Proc. Natl Acad. Sci. USA. 88:1991;3569-3573.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 3569-3573
    • Vesnaver, G.1    Breslauer, K.J.2
  • 28
    • 0025896047 scopus 로고
    • Differential hydration of dA. dT base pairing and dA and dT bulges in deoxynucleotides
    • Zieba K., Chu T. M., Kupke D. W., Marky L. A. Differential hydration of dA. dT base pairing and dA and dT bulges in deoxynucleotides. Biochemistry. 30:1991;8018-8026.
    • (1991) Biochemistry , vol.30 , pp. 8018-8026
    • Zieba, K.1    Chu, T.M.2    Kupke, D.W.3    Marky, L.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.