-
1
-
-
0000265069
-
Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution
-
Altona C. Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution. Recl. Trav. Chim. Pay. B. 101:1982;413-433.
-
(1982)
Recl. Trav. Chim. Pay. B
, vol.101
, pp. 413-433
-
-
Altona, C.1
-
2
-
-
0025734548
-
The three-dimensional structure of a DNA hairpin in solution: Two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT)
-
Blommers M. J. J., van de Ven F. J. M., van der Marel G. A., van Boom J. H., Hilbers C. W. The three-dimensional structure of a DNA hairpin in solution: two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT). Eur. J. Biochem. 201:1991;33-51.
-
(1991)
Eur. J. Biochem.
, vol.201
, pp. 33-51
-
-
Blommers, M.J.J.1
Van De Ven, F.J.M.2
Van Der Marel, G.A.3
Van Boom, J.H.4
Hilbers, C.W.5
-
3
-
-
0028913948
-
Solution structure of an oncogenic DNA duplex, the K-ras gene and the sequence containing a central CA or AG mismatch as a function of pH: Nuclear magnetic resonance and molecular dynamics studies
-
Boulard Y., Cognet J. A. H., Gabarro-Arpa J., Le Bret M., Carbonnaux C., Fazakerley G. V. Solution structure of an oncogenic DNA duplex, the K-ras gene and the sequence containing a central CA or AG mismatch as a function of pH: nuclear magnetic resonance and molecular dynamics studies. J. Mol. Biol. 246:1995;194-208.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 194-208
-
-
Boulard, Y.1
Cognet, J.A.H.2
Gabarro-Arpa, J.3
Le, B.M.4
Carbonnaux, C.5
Fazakerley, G.V.6
-
4
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate J. H., Gooding A. R., Podell E., Zhou K., Golden B. L., Kundrot C. E., Cech T. R., Doudna J. A. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science. 273:1996;1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
5
-
-
0021109405
-
Sequence-specific recognition of deoxyribonucleic acid; Chemical synthesis and nuclear magnetic resonance assignment of the imino protons of lamda OR3 operator deoxyribonueleic acid
-
Chou S.-H., Hare D. R., Wemmer D. E., Reid B. R. Sequence-specific recognition of deoxyribonucleic acid; Chemical synthesis and nuclear magnetic resonance assignment of the imino protons of lamda OR3 operator deoxyribonueleic acid. Biochemistry. 22:1983;3037-3041.
-
(1983)
Biochemistry
, vol.22
, pp. 3037-3041
-
-
Chou, S.-H.1
Hare, D.R.2
Wemmer, D.E.3
Reid, B.R.4
-
7
-
-
0028146180
-
DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G:A pairs in solution
-
Chou S.-H., Cheng J.-W., Fedoroff O., Reid B. R. DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G:A pairs in solution. J. Mol. Biol. 241:1994a;467-479.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 467-479
-
-
Chou, S.-H.1
Cheng, J.-W.2
Fedoroff, O.3
Reid, B.R.4
-
8
-
-
0028063442
-
2motif: Unpaired guanosines stacked between sheared GA pairs
-
2motif: unpaired guanosines stacked between sheared GA pairs. J. Mol. Biol. 244:1994b;259-268.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 259-268
-
-
Chou, S.-H.1
Zhu, L.2
Reid, B.R.3
-
9
-
-
17544394367
-
Hairpin loops consisting of single adenine residues closed by sheared A:A and G:G pairs formed by the DNA triplets AAA and GAG: Solution structure of the d(GTACAAAGTAC) hairpin
-
Chou S.-H., Zhu L., Gao Z., Cheng J.-W., Reid B. R. Hairpin loops consisting of single adenine residues closed by sheared A:A and G:G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin. J. Mol. Biol. 264:1996a;981-1001.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 981-1001
-
-
Chou, S.-H.1
Zhu, L.2
Gao, Z.3
Cheng, J.-W.4
Reid, B.R.5
-
10
-
-
0029951996
-
On the relative ability of centromeric GNA triplets to form hairpins versus self-paired duplexes
-
Chou S.-H., Zhu L., Reid R. R. On the relative ability of centromeric GNA triplets to form hairpins versus self-paired duplexes. J. Mol. Biol. 259:1996b;445-457.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 445-457
-
-
Chou, S.-H.1
Zhu, L.2
Reid, R.R.3
-
11
-
-
0031576896
-
Sheared purine:purine pairing in biology
-
Chou S.-H., Zhu L., Reid B. R. Sheared purine:purine pairing in biology. J. Mol. Biol. 267:1997;1055-1067.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1055-1067
-
-
Chou, S.-H.1
Zhu, L.2
Reid, B.R.3
-
12
-
-
9444271764
-
Requirements for kissing loop-mediated dimerization of human immunodeficiency virus RNA
-
Clever J. L., Wong M. L., Parslow T. G. Requirements for kissing loop-mediated dimerization of human immunodeficiency virus RNA. J. Virol. 70:1996;5902-5908.
-
(1996)
J. Virol.
, vol.70
, pp. 5902-5908
-
-
Clever, J.L.1
Wong, M.L.2
Parslow, T.G.3
-
13
-
-
0030856333
-
Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain
-
Correll C. C., Freeborn B., Moore P. B., Steitz T. A. Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain. Cell. 91:1997;705-712.
-
(1997)
Cell
, vol.91
, pp. 705-712
-
-
Correll, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
14
-
-
0031574326
-
The loop E-loop D region of Escherichia coli 5S rRNA: The solution structure reveals an unusual loop that may be important for binding ribosomal proteins
-
Dallas A., Moore P. B. The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins. Structure. 5:1997;1639-1653.
-
(1997)
Structure
, vol.5
, pp. 1639-1653
-
-
Dallas, A.1
Moore, P.B.2
-
15
-
-
0028938599
-
Stereoelectronic effects of deoxyribose O4′ on DNA conformation
-
Egli M., Gessner R. V. Stereoelectronic effects of deoxyribose O4′ on DNA conformation. Proc. Natl Acad. Sci. USA. 92:1995;180-184.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 180-184
-
-
Egli, M.1
Gessner, R.V.2
-
16
-
-
0023657266
-
NMR studies of AC mismatches in DNA dodecanucleotides at acidic pH
-
Gao X., Patel D. J. NMR studies of AC mismatches in DNA dodecanucleotides at acidic pH. J. Biol. Chem. 262:1987;16973-16984.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 16973-16984
-
-
Gao, X.1
Patel, D.J.2
-
18
-
-
0021105577
-
Assignment of the non-exchangeable proton resonances of d(CGCGAATTCGCG) using two-dimensional nuclear magnetic resonance methods
-
Hare D. R., Wemmer D. E., Chou S.-H., Drobny G., Reid B. R. Assignment of the non-exchangeable proton resonances of d(CGCGAATTCGCG) using two-dimensional nuclear magnetic resonance methods. J. Mol. Biol. 171:1983;319-336.
-
(1983)
J. Mol. Biol.
, vol.171
, pp. 319-336
-
-
Hare, D.R.1
Wemmer, D.E.2
Chou, S.-H.3
Drobny, G.4
Reid, B.R.5
-
19
-
-
0026423027
-
Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
-
Heus H. A., Pardi A. Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science. 253:1991;191-194.
-
(1991)
Science
, vol.253
, pp. 191-194
-
-
Heus, H.A.1
Pardi, A.2
-
20
-
-
0028247062
-
Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: An extraordinarily stable structure resistant to nucleases and heat
-
Hirao I., Kawai G., Yoshizawa S., Nishimura Y., Ishido Y., Watanabe K., Miura K.-I. Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat. Nucl. Acids Res. 22:1994;576-582.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 576-582
-
-
Hirao, I.1
Kawai, G.2
Yoshizawa, S.3
Nishimura, Y.4
Ishido, Y.5
Watanabe, K.6
Miura, K.-I.7
-
21
-
-
0022505062
-
Structure of an adenine:cytosine base pair in DNA and its implications for mismatch repair
-
Hunter W. N., Brown T., Anand N. N., Kennard O. Structure of an adenine:cytosine base pair in DNA and its implications for mismatch repair. Nature. 320:1986;552-555.
-
(1986)
Nature
, vol.320
, pp. 552-555
-
-
Hunter, W.N.1
Brown, T.2
Anand, N.N.3
Kennard, O.4
-
22
-
-
0027318776
-
Crystal structure of human immunodeficiency virus type I reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA
-
Jacob-Molina A., Ding J., Nanni R. G., Clark A. D. J., Lu X., Tantillo C., Williams R. L., Kamer G., Ferris A. L., Clark P., Hizi A., Hughes S. H., Arnold E. Crystal structure of human immunodeficiency virus type I reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA. Proc. Natl Acad. Sci. USA. 90:1993;6320-6324.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6320-6324
-
-
Jacob-Molina, A.1
Ding, J.2
Nanni, R.G.3
Clark, A.D.J.4
Lu, X.5
Tantillo, C.6
Williams, R.L.7
Kamer, G.8
Ferris, A.L.9
Clark, P.10
Hizi, A.11
Hughes, S.H.12
Arnold, E.13
-
23
-
-
0030899860
-
Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization
-
Laughrea M., Jette L., Mak J., Kleiman L., Liang C., Wainberg M. A. Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization. J. Virol. 71:1997;3397-3406.
-
(1997)
J. Virol.
, vol.71
, pp. 3397-3406
-
-
Laughrea, M.1
Jette, L.2
Mak, J.3
Kleiman, L.4
Liang, C.5
Wainberg, M.A.6
-
24
-
-
0026053768
-
NMR and molecular modeling evidence for a GA mismatch base pair in a purine-rich DNA duplex
-
Li Y., Zon G., Wilson W. D. NMR and molecular modeling evidence for a GA mismatch base pair in a purine-rich DNA duplex. Proc. Natl Acad. Sci. USA. 88:1991;26-30.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 26-30
-
-
Li, Y.1
Zon, G.2
Wilson, W.D.3
-
26
-
-
0031749733
-
Structure of the dimer initiation complex of HIV-1 genomic RNA
-
Mujeeb A., Clever J. L., Billeci T. M., James T. L., Parslow T. G. Structure of the dimer initiation complex of HIV-1 genomic RNA. Nature Struct. Biol. 5:1998;432-436.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 432-436
-
-
Mujeeb, A.1
Clever, J.L.2
Billeci, T.M.3
James, T.L.4
Parslow, T.G.5
-
27
-
-
0030998268
-
An extended DNA structure through deoxyribose-base stacking induced by RecA protein
-
Nishinaka T., Ito Y., Yokoyama S., Shibata T. An extended DNA structure through deoxyribose-base stacking induced by RecA protein. Proc. Natl Acad. Sci. USA. 94:1997;6623-6628.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6623-6628
-
-
Nishinaka, T.1
Ito, Y.2
Yokoyama, S.3
Shibata, T.4
-
28
-
-
0029117927
-
The CH/π interaction: Sgnificance in molecular recognition
-
Nishio M., Umezawa Y., Hirota M., Takeuchi Y. The CH/π interaction: sgnificance in molecular recognition. Tetrahderon. 51:1995;8665-8701.
-
(1995)
Tetrahderon
, vol.51
, pp. 8665-8701
-
-
Nishio, M.1
Umezawa, Y.2
Hirota, M.3
Takeuchi, Y.4
-
29
-
-
0031552595
-
Non-canonical interactions in a kissing loop complex: The dimerization initiation site of HIV-1 genome RNA
-
Paillart J. C., Westhof E., Ehresmann C., Ehresmann B., Marquet R. Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genome RNA. J. Mol. Biol. 270:1997;36-49.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 36-49
-
-
Paillart, J.C.1
Westhof, E.2
Ehresmann, C.3
Ehresmann, B.4
Marquet, R.5
-
30
-
-
33845555707
-
Exchangeable poton NMR without base-line distortion, using new strong-pulse sequences
-
Plateau P., Gueron M. Exchangeable poton NMR without base-line distortion, using new strong-pulse sequences. J. Am. Chem. Soc. 104:1982;7310-7311.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 7310-7311
-
-
Plateau, P.1
Gueron, M.2
-
31
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley H. W., Flaherty K. M., McKay D. B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994;68-74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
32
-
-
0027146665
-
Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics
-
SantaLucia J. J., Turner D. Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics. Biochemistry. 32:1993;12612-12623.
-
(1993)
Biochemistry
, vol.32
, pp. 12612-12623
-
-
Santalucia, J.J.1
Turner, D.2
-
34
-
-
0015930114
-
Determination of the preferred conformations constrained along the C4′-C5′ and C5′-O5′ bonds of β-5′-nucleotide in solution. Four-bond 31P-1H coupling
-
Sarma R. H., Mynott R. J., Wood D. J., Hruska F. E. Determination of the preferred conformations constrained along the C4′-C5′ and C5′-O5′ bonds of β-5′-nucleotide in solution. Four-bond 31P-1H coupling. J. Am. Chem. Soc. 95:1973;6457-6459.
-
(1973)
J. Am. Chem. Soc.
, vol.95
, pp. 6457-6459
-
-
Sarma, R.H.1
Mynott, R.J.2
Wood, D.J.3
Hruska, F.E.4
-
35
-
-
0029165745
-
High-affinity ssDNA inhibitors of the reverse transcriptase of type 1 human immunodeficiency virus
-
Schneider D. J., Feigon J., Hostomsky Z., Gold L. High-affinity ssDNA inhibitors of the reverse transcriptase of type 1 human immunodeficiency virus. Biochemistry. 34:1995;9599-9610.
-
(1995)
Biochemistry
, vol.34
, pp. 9599-9610
-
-
Schneider, D.J.1
Feigon, J.2
Hostomsky, Z.3
Gold, L.4
-
36
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott W. G., Finch J. T., Klug A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell. 81:1995;991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
37
-
-
0023046345
-
Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy
-
Sklenar V., Miyashiro H., Zon G., Miles H. T., Bax A. Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy. FEBS Letters. 208:1986;94-98.
-
(1986)
FEBS Letters
, vol.208
, pp. 94-98
-
-
Sklenar, V.1
Miyashiro, H.2
Zon, G.3
Miles, H.T.4
Bax, A.5
-
39
-
-
0027439912
-
The conformation of loop E of eukaryotic 5S ribosomal RNA
-
Wimberly B., Varani G., Tinoco I. J. The conformation of loop E of eukaryotic 5S ribosomal RNA. Biochemistry. 32:1993;1078-1087.
-
(1993)
Biochemistry
, vol.32
, pp. 1078-1087
-
-
Wimberly, B.1
Varani, G.2
Tinoco, I.J.3
-
40
-
-
0029267350
-
An improved NOESY simulation program for partially relaxed spectra: BIRDER
-
Zhu L., Reid B. R. An improved NOESY simulation program for partially relaxed spectra: BIRDER. J. Magn. Reson. ser. B. 116:1995;227-235.
-
(1995)
J. Magn. Reson. Ser. B
, vol.116
, pp. 227-235
-
-
Zhu, L.1
Reid, B.R.2
-
41
-
-
0028800948
-
Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA
-
Zhu L., Chou S.-H., Reid B. R. Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA. Nature Struct. Biol. 2:1995a;1012-1017.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 1012-1017
-
-
Zhu, L.1
Chou, S.-H.2
Reid, B.R.3
-
42
-
-
0029593488
-
The structure of a novel DNA duplex formed by human centromere d(TGGAA) repeats with possible implications for chromosome attachment during mitosis
-
Zhu L., Chou S.-H., Reid R. B. The structure of a novel DNA duplex formed by human centromere d(TGGAA) repeats with possible implications for chromosome attachment during mitosis. J. Mol. Biol. 254:1995b;623-637.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 623-637
-
-
Zhu, L.1
Chou, S.-H.2
Reid, R.B.3
|