Evidence for breaking domain-domain functional communication in a synthetase-tRNA complex

Biochemistry

Volumn 38, Issue 49, 1999, Pages 16359-16365

  Alexander, Rebecca W ^a   Schimmel, Paul ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; AMINOACYL TRANSFER RNA;

AMINOACYLATION; ANTICODON; ARTICLE; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME BINDING; ENZYME STRUCTURE; GENE MUTATION; PRIORITY JOURNAL; PROTEIN DOMAIN; RNA BINDING; SIGNAL TRANSDUCTION;

ACYLATION; ALANINE; AMINO ACID SUBSTITUTION; ANTICODON; ASPARAGINE; BASE SEQUENCE; BINDING SITES; ENZYME ACTIVATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, ENZYMOLOGIC; KINETICS; METHIONINE; METHIONINE-TRNA LIGASE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; RNA, TRANSFER, MET; THERMUS THERMOPHILUS;

EID: 0033534154     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991948c     Document Type: Article

References (48)

1. Webster, T., Tsai, H., Kula, M., Mackie, G. A., and Schimmel, P. (1984) Science 226, 1315-1317.
2. Eriani, G., Delarue, M., Poch, O., Gangloff, J., and Moras, D. (1990) Nature 347, 203-206.
3. Cusack, S., Berthet-Colominas, C., Hartlein, M., Nassar, N., and Leberman, R. (1990) Nature 347, 249-255.
4. Hountondji, C., Lederer, F., Dessen, P., and Blanquet, S. (1986) Biochemistry 25, 16-21.
5. Schimmel, P. (1987) Annu. Rev. Biochem. 56, 125-158.
6. Park, S. J., and Schimmel, P. (1988) J. Biol. Chem. 263, 16527-16530.
7. Dock-Bregeon, A. C., Garcia, A., Giegé, R., and Moras, D. (1990) Eur. J. Biochem. 188, 283-290.
8. Schulman, L. H., and Pelka, H. (1988) Science 242, 765-768.
9. Kim, H. Y., Pelka, H., Brunie, S., and Schulman, L. H. (1993) Biochemistry 32, 10506-10511.
10. Kim, S., Ribas de Pouplana, L., and Schimmel, P. (1994) Biochemistry 33, 11040-11045.
11. Auld, D. S., and Schimmel, P. (1995) Science 267, 1994-1996.
12. Brunie, S., Zelwer, C., and Risler, J. L. (1990) J. Mol. Biol. 216, 411-424.
13. Leon, O., and Schulman, L. H. (1987) Biochemistry 26, 5416-5422.
14. Ghosh, G., Pelka, H., and Schulman, L. H. (1990) Biochemistry 29, 2220-2225.
15. Meinnel, T., Mechulam, Y., Blanquet, S., and Fayat, G. (1991) J. Mol. Biol. 220, 205-208.
16. Muramatsu, T., Nishikawa, K., Nemoto, F., Kuchino, Y., Nishimura, S., Miyazawa, T., and Yokoyama, S. (1988) Nature 336, 179-181.
17. Meinnel, T., Mechulam, Y., Le Corre, D., Panvert, M., Blanquet, S., and Fayat, G. (1991) Proc. Natl. Acad Sci. U.S.A. 88, 291-295.
18. Lee, C. P., Dyson, M. R., Mandal, N., Varshney, U., Bahramian, B., and RajBhandary, U. L. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 9262-9266.
19. Martinis, S. A., and Schimmel, P. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 65-69.
20. Martinis, S. A., and Schimmel, P. (1993) J. Biol. Chem. 268, 6069-6072.
21. Gale,. A. J., and Schimmel, P. (1995) Biochemistry 34, 8896-8903.
22. Alexander, R. W., Nordin, B. E., and Schimmel, P. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 12214-12219.
23. Kim, S., and Schimmel, P. (1992) J. Biol. Chem. 267, 15563-15567.
24. Ribas de Pouplana, L., Auld, D. S., Kim, S., and Schimmel, P. (1996) Biochemistry 35, 8095-8102.
25. Rould, M. A., Perona, J. J., Söll, D., and Steitz, T. A. (1989) Science 246, 1135-1142.
26. Perona, J. J., Rould, M. A., Steitz, T. A., Risler, J. L., Zelwer, C., and Brunie, S. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2903-2907.
27. Schmitt, E., Meinnel, T., Panvert, M., Mechulam, Y., and Blanquet, S. (1993) J. Mol. Biol. 233, 615-628.
28. Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Gene 33, 103-119.
29. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254.
30. Seong, B. L., and RajBhandary, U. L. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 334-338.
31. Calendar, R., and Berg, P. (1966) Biochemistry 5, 1690-1695.
32. Blanquet, S., Iwatsubo, M., and Waller, J. P. (1973) Eur. J. Biochem. 36, 213-226.
33. Dardel, F., Panvert, M., and Fayat, G. (1990) Mol. Gen. Genet. 223, 121-133.
34. Cassio, D., and Waller, J. P. (1971) Eur. J. Biochem. 20, 283-300.
35. Mellot, P., Mechulam, Y., Le Corre, D., Blanquet, S., and Fayat, G. (1989) J. Mol. Biol. 208, 429-443.
36. Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Shimada, A., Tateno, M., Lorer, B., Giegé, R., Moras, D., Yokoyama, S., and Konno, M. (1999) PDB accession number 1A8H.
37. Ghosh, G., Pelka, H., Schulman, L. H., and Brunie, S. (1991) Biochemistry 30, 9569-9575.
38. Rould, M. A., Perona, J. J., and Steitz, T. A. (1991) Nature 352, 213-218.
39. Jahn, M., Rogers, M. J., and Soll, D. (1991) Nature 352, 258-260.
40. Rogers, M. J., Adachi, T., Inokuchi, H., and Söll, D. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 291-295.
41. Weygand-Duraševic, I., Rogers, M. J., and Söll, D. (1994) J. Mol. Biol. 240, 111-118.
42. Ibba, M., Hong, K. W., Sherman, J. M., Sever, S., and Söll, D. (1996) Proc. Natl. Acad Sci. U.S.A. 93, 6953-6958.
43. Kitabatake, M., Ibba, M., Hong, K. W., Söll, D., and Inokuchi, H. (1996) Mol. Gen. Genet. 252, 717-722.
44. Sherman, J. M., Thomann, H. U., and Söll, D. (1996) J. Mol. Biol. 256, 818-828.
45. Perona, J. J., Rould, M. A., and Steitz, T. A. (1993) Biochemistry 32, 8758-8771.
46. Pütz, J., Puglisi, J. D., Florentz, C., and Giegé, R. (1991) Science 252, 1696-1699.
47. Ruff, M., Krishnaswamy, S., Boeglin, M., Poterszman, A., Mitschier, A., Podjarny, A., Rees, B., Thierry, J. C., and Moras, D. (1991) Science 252, 1682-1689.
48. Gale, A. J., Shi, J. P., and Schimmel, P. (1996) Biochemistry 35, 608-615.