메뉴 건너뛰기




Volumn 286, Issue 4, 1999, Pages 973-981

Minor groove DNA-protein contacts upstream of a tRNA gene detected with a synthetic DNA binding ligand

Author keywords

pol III; Pyrrole imidazole polyamides; TBP; TFIIIB; Transcription factor

Indexed keywords

DOUBLE STRANDED DNA; IMIDAZOLE; POLYAMIDE; PROTEIN SUBUNIT; PYRROLE; SYNTHETIC DNA; TRANSFER RNA;

EID: 0033525806     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2539     Document Type: Article
Times cited : (21)

References (30)
  • 1
    • 0030059085 scopus 로고    scopus 로고
    • Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids
    • Baird E. E., Dervan P. B. Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids. J. Am. Chem. Soc. 118:1996;6141-6146.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 2
    • 0026540237 scopus 로고
    • Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes
    • Braun B. R., Kassavetis G. A., Geiduschek E. P. Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes. J. Biol. Chem. 267:1992;22562-22569.
    • (1992) J. Biol. Chem. , vol.267 , pp. 22562-22569
    • Braun, B.R.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 3
    • 0032033739 scopus 로고    scopus 로고
    • Inhibition of major-groove-binding proteins by pyrrole-imidazole polyamides with an Arg-Pro-Arg positive patch
    • Bremer R. E., Baird E. E., Dervan P. B. Inhibition of major-groove-binding proteins by pyrrole-imidazole polyamides with an Arg-Pro-Arg positive patch. Chem. Biol. 5:1998;119-133.
    • (1998) Chem. Biol. , vol.5 , pp. 119-133
    • Bremer, R.E.1    Baird, E.E.2    Dervan, P.B.3
  • 4
    • 0026712868 scopus 로고
    • A suppressor of TBP mutations encodes an RNA polymerase III transcription factor with homology to TFIIB
    • Buratowski S., Zhou H. A suppressor of TBP mutations encodes an RNA polymerase III transcription factor with homology to TFIIB. Cell. 71:1992;221-230.
    • (1992) Cell , vol.71 , pp. 221-230
    • Buratowski, S.1    Zhou, H.2
  • 6
    • 0030751494 scopus 로고    scopus 로고
    • Domain packing and dynamics in the DNA complex of the amino-terminal zinc fingers of transcription factor IIIA
    • Foster M. P., Wuttke D. S., Case D. A., Gottesfeld J. M., Wright P. E. Domain packing and dynamics in the DNA complex of the amino-terminal zinc fingers of transcription factor IIIA. Nature Struct. Biol. 4:1997;605-608.
    • (1997) Nature Struct. Biol. , vol.4 , pp. 605-608
    • Foster, M.P.1    Wuttke, D.S.2    Case, D.A.3    Gottesfeld, J.M.4    Wright, P.E.5
  • 7
    • 0028171224 scopus 로고
    • Design of a G·C-specific DNA minor groove-binding peptide
    • Geierstanger B. H., Mrksich M., Dervan P. B., Wemmer D. E. Design of a G·C-specific DNA minor groove-binding peptide. Science. 266:1994;646-650.
    • (1994) Science , vol.266 , pp. 646-650
    • Geierstanger, B.H.1    Mrksich, M.2    Dervan, P.B.3    Wemmer, D.E.4
  • 9
    • 0022625180 scopus 로고
    • A dispersed tyrosine tRNA gene from Xenopuslaevis with high transcriptional activity in vitro
    • Gouilloud E., Clarkson S. G. A dispersed tyrosine tRNA gene from Xenopuslaevis with high transcriptional activity in vitro. J. Biol. Chem. 261:1986;486-494.
    • (1986) J. Biol. Chem. , vol.261 , pp. 486-494
    • Gouilloud, E.1    Clarkson, S.G.2
  • 10
    • 0027268306 scopus 로고
    • TBP, a universal eukaryotic transcription factor?
    • Hernandez N. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1993;1291-1308.
    • (1993) Genes Dev. , vol.7 , pp. 1291-1308
    • Hernandez, N.1
  • 11
    • 0025055216 scopus 로고
    • S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors
    • Kassavetis G. A., Braun B. R., Nguyen L. H., Geiduschek E. P. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell. 60:1990;235-245.
    • (1990) Cell , vol.60 , pp. 235-245
    • Kassavetis, G.A.1    Braun, B.R.2    Nguyen, L.H.3    Geiduschek, E.P.4
  • 12
    • 0026465666 scopus 로고
    • The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB
    • Kassavetis G. A., Joazeiro C. A. P., Pisano M., Geiduschek E. P., Colbert T., Hahn S., Blanco J. A. The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB. Cell. 71:1992;1055-1064.
    • (1992) Cell , vol.71 , pp. 1055-1064
    • Kassavetis, G.A.1    Joazeiro, C.A.P.2    Pisano, M.3    Geiduschek, E.P.4    Colbert, T.5    Hahn, S.6    Blanco, J.A.7
  • 14
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim J. L., Nikolov D. B., Burley S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993;520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 15
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim Y., Geiger J. H., Hahn S., Sigler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 16
    • 0025896853 scopus 로고
    • Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNA(Gln) gene
    • Leveillard T., Kassavetis G. A., Geiduschek E. P. Saccharomyces cerevisiae transcription factors IIIB and IIIC bend the DNA of a tRNA(Gln) gene. J. Biol. Chem. 266:1991;5162-5168.
    • (1991) J. Biol. Chem. , vol.266 , pp. 5162-5168
    • Leveillard, T.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 17
    • 0027465716 scopus 로고
    • Repression and redirection of Saccharomyces cerevisiae tRNA synthesis from upstream of the transcriptional start site
    • Leveillard T., Kassavetis G. A., Geiduschek E. P. Repression and redirection of Saccharomyces cerevisiae tRNA synthesis from upstream of the transcriptional start site. J. Biol. Chem. 268:1993;3594-3603.
    • (1993) J. Biol. Chem. , vol.268 , pp. 3594-3603
    • Leveillard, T.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 18
    • 0026742525 scopus 로고
    • PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB
    • Lopez-de-Leon A., Librizzi M., Puglia K., Willis I. M. PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB. Cell. 71:1992;211-220.
    • (1992) Cell , vol.71 , pp. 211-220
    • Lopez-De-Leon, A.1    Librizzi, M.2    Puglia, K.3    Willis, I.M.4
  • 19
    • 0029088940 scopus 로고
    • Repression of vertebrate RNA polymerase III transcription by DNA binding proteins located upstream from the transcription start site
    • McBryant S. J., Kassavetis G. A., Gottesfeld J. Repression of vertebrate RNA polymerase III transcription by DNA binding proteins located upstream from the transcription start site. J. Mol. Biol. 250:1995;315-326.
    • (1995) J. Mol. Biol. , vol.250 , pp. 315-326
    • McBryant, S.J.1    Kassavetis, G.A.2    Gottesfeld, J.3
  • 20
    • 0029909496 scopus 로고    scopus 로고
    • RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB
    • Mital R., Kobayashi M. R., Hernandez N. RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB. Mol. Cell. Biol. 16:1996;7031-7042.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 7031-7042
    • Mital, R.1    Kobayashi, M.R.2    Hernandez, N.3
  • 21
    • 0031566037 scopus 로고    scopus 로고
    • Importance of minor groove binding zinc fingers within the transcription factor IIIA-DNA complex
    • Neely L., Trauger J. W., Baird E. E., Dervan P. B., Gottesfeld J. M. Importance of minor groove binding zinc fingers within the transcription factor IIIA-DNA complex. J. Mol. Biol. 274:1997;439-445.
    • (1997) J. Mol. Biol. , vol.274 , pp. 439-445
    • Neely, L.1    Trauger, J.W.2    Baird, E.E.3    Dervan, P.B.4    Gottesfeld, J.M.5
  • 22
    • 0026495668 scopus 로고
    • Evidence that a minor groove-binding peptide and a major groove-binding protein can simultaneously occupy a common site on DNA
    • Oakley M. G., Mrksich M., Dervan P. B. Evidence that a minor groove-binding peptide and a major groove-binding protein can simultaneously occupy a common site on DNA. Biochemistry. 31:1992;10969-10975.
    • (1992) Biochemistry , vol.31 , pp. 10969-10975
    • Oakley, M.G.1    Mrksich, M.2    Dervan, P.B.3
  • 24
    • 0024713267 scopus 로고
    • Oocyte and somatic tyrosine tRNA genes in Xenopuslaevis
    • Stutz F., Gouilloud E., Clarkson S. G. Oocyte and somatic tyrosine tRNA genes in Xenopuslaevis. Genes Dev. 3:1989;1190-1198.
    • (1989) Genes Dev. , vol.3 , pp. 1190-1198
    • Stutz, F.1    Gouilloud, E.2    Clarkson, S.G.3
  • 25
    • 0029786013 scopus 로고    scopus 로고
    • Subnanomolar sequence-specific recognition in the minor groove of DNA by designed ligands
    • Trauger J. W., Baird E. E., Dervan P. B. Subnanomolar sequence-specific recognition in the minor groove of DNA by designed ligands. Nature. 382:1996;559-561.
    • (1996) Nature , vol.382 , pp. 559-561
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 26
    • 0029068497 scopus 로고
    • RNA polymerase II/III transcription specificity determined by TATA box orientation
    • Wang Y., Stumph W. E. RNA polymerase II/III transcription specificity determined by TATA box orientation. Proc. Natl Acad. Sci. USA. 92:1995;8608-8610.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 8608-8610
    • Wang, Y.1    Stumph, W.E.2
  • 27
    • 0029129653 scopus 로고
    • Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- And high-mobility-group protein 2-related domains
    • Wang Z., Roeder R. G. Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains. Proc. Natl Acad. Sci. USA. 92:1995;7026-7030.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7026-7030
    • Wang, Z.1    Roeder, R.G.2
  • 29
    • 0032576722 scopus 로고    scopus 로고
    • Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
    • White S., Szewczyk J. W., Turner J. M., Baird E. E., Dervan P. B. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands. Nature. 391:1998;468-471.
    • (1998) Nature , vol.391 , pp. 468-471
    • White, S.1    Szewczyk, J.W.2    Turner, J.M.3    Baird, E.E.4    Dervan, P.B.5
  • 30
    • 0031576363 scopus 로고    scopus 로고
    • Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: Determinants of affinity and sequence specificity
    • Wuttke D. S., Foster M. P., Case D. A., Gottesfeld J. M., Wright P. E. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity. J. Mol. Biol. 273:1997;183-206.
    • (1997) J. Mol. Biol. , vol.273 , pp. 183-206
    • Wuttke, D.S.1    Foster, M.P.2    Case, D.A.3    Gottesfeld, J.M.4    Wright, P.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.