Biochemical characterization and crystal structure determination of human heart short chain L-3-hydroxyacyl-CoA dehydrogenase provide insights into catalytic mechanism

Biochemistry

Volumn 38, Issue 18, 1999, Pages 5786-5798

  Barycki, Joseph J ^a   O'Brien, Laurie K ^b   Bratt, Judy M ^a   Zhang, Rongguang ^c   Sanishvili, Ruslan ^c   Strauss, Arnold W ^b   Banaszak, Leonard J ^a,d  

^a UNIVERSITY OF MINNESOTA   (United States)

^b WASHINGTON UNIVERSITY   (United States)

^c ARGONNE NATIONAL LABORATORY   (United States)

^d Molec Biol   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A; HELIX LOOP HELIX PROTEIN; NICOTINAMIDE ADENINE DINUCLEOTIDE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CRYSTAL STRUCTURE; DIFFRACTION; DIMERIZATION; ELECTRICITY; ENZYME ACTIVITY; ENZYME DEFICIENCY; HEART; HUMAN; HUMAN TISSUE; HYDROGEN BOND; MOLECULAR MODEL; OXIDATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN QUATERNARY STRUCTURE; PROTEIN SECONDARY STRUCTURE;

3-HYDROXYACYL COA DEHYDROGENASES; AMINO ACID SEQUENCE; BINDING SITES; CATALYSIS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ESCHERICHIA COLI; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MYOCARDIUM; NAD; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS;

EID: 0033522493     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9829027     Document Type: Article

References (34)

1. Noyes, B. E., Glatthaar, B. E., Garavelli, J. S., and Bradshaw, R. A. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 1334-1338.
2. O'Brien, L. K., Sims, H. F., Gibson, B., and Strauss, A. W. (1998) submitted for publication.
3. He, X. Y., and Yang, S. Y. (1996) Biochemistry 35, 9625-9630.
4. Noyes, B. E., and Bradshaw, R. A. (1973) J. Biol. Chem. 248, 3052-3059.
5. El-Fakhri, M., and Middleton, B. (1982) Biochim. Biophys. Acta 713, 270-279.
6. Osumi, T., and Hashimoto, T. (1980) Arch. Biochem. Biophys. 203, 372-383.
7. Novikov, D. K., Vanhove, G. F., Carchon, H., Asselberghs, S., Eyssen, H. J., Van Veldhoven, P. P., and Mannaerts, G. P. (1994) J. Biol. Chem. 269, 27125-27135.
8. Mulders, J. W. M., Hendriks, W., Blackesteijn, M., Bloemendal, H., and de Jong, W. W. (1988) J. Biol. Chem. 263, 15462-15466.
9. Roe, C. R., and Coates, P. M. (1995) in The Metabolic and Molecular Bases of Inherited Disease (Scriver, C. R., Beaudet, A. L., Sly, W. E., and Valle, D., Eds.) 7th ed., pp 1501-1533, McGraw-Hill, New York, NY.
10. Schulz, H. (1996) in Biochemistry of Lipids, Lipoproteins and Membranes (Vance, D. E., and Vance, J., Eds.) pp 75-99, Elsevier, Amsterdam.
11. Furuta, S., Kobayashi, A., Miyazawa, S., and Hashimoto, T. (1997) Biochim. Biophys. Acta 1350, 317-324.
12. Bennett, M. J., Weinberger, M. J., Kobori, J. A., Rinaldo, P., and Burlina, A. B. (1996) Pediatr. Res. 39, 185-188.
13. Pons, R., Roig, M., Riudor, E., Ribes, A., Briones, P., Ortigosa, L., Baldellou, A., Gil-Gibernau, J., Olesti, M., Navarro, C., and Wanders, R. J. A. (1996) Pediatr. Neurol. 14, 236-243.
14. Isaacs, J. D., Jr., Sims, H. F., Powell, C. K., Bennett, M. J., Hale, D. E., Treem, W. R., and Strauss, A. W. (1996) Pediatr. Res. 40, 393-398.
15. Birktoft, J. J., Holden, H. M., Hamlin, R., Xuong, N. H., and Banaszak, L. J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8262-8266.
16. Vredendaal, P. J. C. M., van den Berg, I. E. T., Malingre, H. E. M., Stroobants, A. K., OldeWeghuis, D. E. M., and Berger, R. (1996) Biochem. Biophys. Res. Commun. 223, 718-23.
17. Ramakrishnan, V., Finch, J. T., Graziano, V., Lee, P. L., and Sweet, R. M. (1993) Nature 362, 219-223.
18. Rodgers, D. W. (1997) Methods Enzymol. 276, 183-203.
19. Hendrickson, W. A. (1991) Science 254, 51-58.
20. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326.
21. Terwilliger, T. C., and Berendzen, J. (1997) Acta Crystallogr. D53, 571-579.
22. Levitt, D. G., and Banaszak, L. J. (1993) J. Appl. Crystallogr. 26, 736-745.
23. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D54, 905-921.
24. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. A47, 110-119.
25. Engel, C. K., Mathieu, M., Zeelan, J. P., Hiltunen, J. K., and Wierenga, R. K. (1996) EMBO J. 15, 5135-5145.
26. Adams, M. J., Ellis, G. H., Gover, S., Naylor, C. E., and Philips, C. (1994) Structure 2, 651-668.
27. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
28. Dalziel, K. (1975) in The Enzymes (Boyer, P. D., Ed.) pp 2-61, Academic Press, Inc., New York, NY.
29. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138.
30. Mittl, P. R. E., and Schulz, G. E. (1994) Protein Sci. 3, 799-809.
31. He, X. Y., Deng, H., and Yang, S. Y. (1997) Biochemistry 36, 261-268.
32. Ibdahl, J. A., Bennett, M. J., Rinaldo, P., Zhao, Y., Gibson, B., Sims, H., and Strauss, A. W. (1998) submitted for publication.
33. Sakowicz, R., Kallwass, H. K. W., Parris, W., Kay, C. M., Jones, J. B., and Gold, M. (1993) Biochemistry 32, 12730-12735.
34. Cunningham, M. A., Ho, L. L., Nguyen, D. T., Gillilan, R. E., and Bash, P. A. (1997) Biochemistry 36, 4800-4816.