Identification of two hERR2-related novel nuclear receptors utilizing bioinformatics and inverse PCR

Gene

Volumn 228, Issue 1-2, 1999, Pages 101-109

  Chen, Fang ^a   Zhang, Qing ^a   McDonald, Terry ^a   Davidoff, Michael J ^a   Bailey, Wendy ^a   Bai, Chang ^a   Liu, Qingyun ^a   Caskey, C Thomas ^a  

^a MERCK RESEARCH LABORATORIES   (United States)

Author keywords

Chromosomal mapping; Early placentation; EST; Full length cDNA; Steroid receptor

Indexed keywords

CELL NUCLEUS RECEPTOR;

ANIMAL CELL; ARTICLE; CHROMOSOME MAP; DNA LIBRARY; GENE LOCUS; LIGAND BINDING; MOLECULAR CLONING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; RECEPTOR UPREGULATION; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, NORTHERN; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 1; CHROMOSOMES, HUMAN, PAIR 14; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DNA; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION; GENE EXPRESSION REGULATION; HUMANS; HYBRID CELLS; MICE; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; RATS; RECEPTORS, CYTOPLASMIC AND NUCLEAR; RECEPTORS, ESTROGEN; RNA; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TISSUE DISTRIBUTION; TRANSCRIPTION, GENETIC;

ANIMALIA;

EID: 0033522229     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00619-2     Document Type: Article

References (30)

1. Alphey L. PCR-based method for isolation of full-length clones and splice variants from cDNA libraries. BioTechniques. 22:1997;481-486.
2. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
3. Chen F., Cooney A.J., Wang Y., Law S.W., O'Malley B.W. Cloning of a novel orphan receptor (GCNF) expressed during germ cell development. Mol. Endo. 8:1994;1434-1444.
4. Chen H.C., Kung H.J., Robinson D. Digital cloning: identification of human cDNAs homologous to novel kinases through expressed sequence tag database searching. J. Biomedical Science. 5:1998;86-92.
5. Cowley S.M., Hoare S., Mosselman S., Parker M.G. Estrogen receptors α and β form heterodimers on DNA. J. Biol. Chem. 272:1997;19858-19862.
6. Cox D.R., Burmeister M., Price E.R., Kim S., Myers R.M. Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science. 250:1990;245-250.
7. Dreyer C., Krey G., Keller H., Grivel F., Helftenbein G., Wahli W. Control of the peroxisomal β-oxidation pathway by a novel family of nuclear hormone receptors. Cell. 68:1992;879-887.
8. Eudy J.D., Yao S.F., Weston M.D., Ma-Edmonds M., Talmadge C.B., Cheng J.J., Kimberling W.J., Sumegi J. Isolation of a gene encoding a novel member of the nuclear receptor superfamily from the critical region of usher syndrome type IIa at 1q41. Genomics. 50:1998;382-384.
9. Evans R.M. The steroid and thyroid hormone receptor superfamily. Science. 240:1988;889-894.
10. Giguere V., Yang N., Segui P., Evans R.M. Identificaiton of a new class of steroid hormone receptors. Nature. 331:1988;91-94.
11. Israel D.I. A PCR-based method for high stringency screening of DNA libraries. Nucleic Acids Research. 21:1993;2627-2631.
12. Issemann I., Green S. Activation of a member of the steroid hormone receptor superfamily by peroxisome proliferators. Nature. 347:1990;645-649.
13. Johnston S.D., Liu X., Zuo F., Eisenbraun T., Wiley S.R., Kraus R.J., Mertz J.E. Estrogen-related receptor α1 functionally binds as a monomer to extended half-site sequences including ones contained within estrogen-response elements. Mol. Endo. 11:1997;342-352.
14. Jones D.H., Howard B.H. A rapid method for site-specific mutagenesis and directional subcloning by using the polymerase chain reaction to generate recombinant circles. BioTechniques. 8:1990;178-183.
15. Laudet V., Hanni C., Coll J., Catzeflis F., Stehelin D. Evolution of the nuclear receptor gene superfamily. EMBO. 11:1992;1003-1013.
16. Liu Q., Bai C., Chen F., Wang R., McDonald T., Gu M., Zhang Q., Morsy M.A., Caskey C.T. Uncoupling protein-3: a muscle-specific gene upregulated by leptin in ob/ob mice. Gene. 207:1998;1-7.
17. Liu S., Stoesz S.P., Pickett C.B. Identification of a novel human glutathione S-transferase using bioinformatics. Archives of Biochemistry and Biophysics. 352:1998;306-313.
18. Luo J., Sladek R., Bader J., Matthyssen A., Rossant J., Giguere V. Placental abnormalities in mouse embryos lacking the orphan nuclear receptor ERR-β Nature. 388:1997;778-782.
19. Mangelsdorf D.J., Thummel C., Beato M., Herrlich P., Schutz G., Umesono K., Blumberg B., Kastner P., Mark M., Chambon P., Evans R.M. The nuclear receptor superfamily: the second decade. Cell. 83:1995;835-839.
20. McDonald T., Wang R., Bailey W., Xie G., O'Neill G., Abramowitz M., Chen F., Caskey C.T., Liu Q. Identification and cloning of two closely related orphan G protein-coupled receptors of the glycoprotein hormone receptor family. BBRC. 247:1998;266-270.
21. Mosselman S., Polman J., Dijkema R. ERb: identification and characterization of a novel human estrogen receptor. FEBS. 392:1996;49-53.
22. Munroe D.J., Loebbert R., Bric E., Whitton T., Prawitt D., Vu D., Buckler A., Winterpacht A., Zabel B., Housman D.E. Systematic screening of an arrayed cDNA library by PCR. Proc. Nat. Acad. Sci. USA. 92:1995;2209-2213.
23. O'Malley B. The steroid receptor superfamily: more excitement predicted for the future. Mol. Endo. 4:1990;363-369.
24. Pettersson K., Svensson K., Mattsson R., Carlsson B., Ohlsson R., Berkenstam A. Expression of a novel member of estrogen response element-binding nuclear receptors is restricted to the early stages of chorion formation during mouse embryogenesis. Mech. Dev. 54:1996;211-223.
25. Schmidt A., Endo N., Rutledge S.J., Vogel R., Shinar D., Rodan G.A. Identificaiton of a new member of the steroid hormone receptor superfamily that is activated by a peroxisome proliferator and fatty acids. Mol. Endo. 6:1992;1634-1641.
26. Sem D.S., Casimiro D.R., Kliewer S.A., Provencal J., Evans R.M., Wright P.E. NMR spectroscopic studies of the DNA-binding domain of the monomer-binding nuclear orphan receptor, human estrogen related receptor-2. J. Biol. Chem. 272:1997;18038-18043.
27. Sladek R., Bader J.A., Giguere V. The orphan nuclear receptor estrogen-related receptor α is a transcriptional regulator of the human medium-chain acyl coenzyme A dehydrogenase gene. Mol. Cell. Biochem. 17:1997;5400-5409.
28. Trapp T., Holsboer F. Nuclear orphan receptor as a repressor of glucocorticoid receptor transcriptional activity. J. Biol. Chem. 271:1996;9879-9882.
29. Wells T.N.C., Peitsch M.C. The chemokine information source: identification and characterization of novel chemokines using the WorldWide Web and expressed sequence tag databases. J. Leukocyte Biochem. 61:1997;545-550.
30. Wilson T.E, Paulsen R.E., Padgett K.A., Milbrandt J. Participation of non-zinc finger residues in DNA binding by two nuclear orphan receptors. Science. 256:1992;107-110.