The catalytic mechanism of a pyrimidine dimer-specific glycosylase (pdg)/abasic lyase, chlorella virus-pdg

Journal of Biological Chemistry

Volumn 274, Issue 14, 1999, Pages 9786-9794

  Garvish, John F ^a,b   Lloyd, R Stephen ^b  

^a University of Texas Medical Branch School of Medicine   (United States)

^b UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA GLYCOSYLTRANSFERASE; OLIGONUCLEOTIDE; PYRIMIDINE DIMER;

ARTICLE; CATALYSIS; CHLORELLA VIRUS; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME SPECIFICITY; ENZYME SUBSTRATE; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN PURIFICATION; SITE DIRECTED MUTAGENESIS;

BACTERIOPHAGE T4; BINDING SITES; CARBON-OXYGEN LYASES; CATALYSIS; CHLORELLA; DEOXYRIBONUCLEASE IV (PHAGE T4-INDUCED); DNA GLYCOSYLASES; DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GLUTAMIC ACID; MUTAGENESIS, SITE-DIRECTED; N-GLYCOSYL HYDROLASES; PYRIMIDINE DIMERS; THYMINE;

CHLORELLA VIRUS; PARAMECIUM BURSARIA; PARAMECIUM BURSARIA CHLORELLA VIRUS 1; T4 BACTERIOPHAGE;

EID: 0033515593     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.14.9786     Document Type: Article

References (33)

1. Wang, S. Y. (ed) (1976) Photochemistry and Photobiology of Nucleic Acids, Vol. I, pp. 169-225, Academic Press, New York
2. Kim, J., and Linn, S. (1988) Nucleic Acids Res. 16, 1135-1141
3. Manaharan, M., Mazumder, A., Ransom, S. C., and Gerlt, J. A. (1988) J. Am. Chem. Soc. 110, 2690-2691
4. Bailey, V., Sente, B., and Verly, W. G. (1989) Biochem. J. 259, 751-759
5. Lloyd, R. S. (1998) Mutat. Res. 408, 159-170
6. Lloyd, R. S. (1999) Prog. Nucleic Acid Res. Mol. Biol. 62, 155-175
7. Furuta, M., Schrader, J. O., Schrader, H. S., Kokjohn, T. A., Nyaga, S., McCullough, A. K., Lloyd, R. S., Burbank, D. E., Landstein, D., Lane, L., and Van Etten, J. L. (1991) Appl. Environ. Microbiol. 63, 1551-1556
8. Bogenhagen, D. F., and Pinz, K. G. (1998) J. Biol. Chem. 273, 7888-7893
9. Morikawa, K., Matsumoto, O., Tsujimoto, M., Katayanagi, K., Ariyoshi, M., Doi, T., Ikehara, M., Inaoka, T., and Ohtsuka, E. (1992) Science 256, 523-526
10. Morikawa, K., Ariyoshi, M., Vassylyev, D. G., Matsumoto, O., Katayanagi, K., and Ohtsuka, E. (1995) J. Mol. Biol. 249, 360-375
11. Schrock, R. D., III, and Lloyd, R. S. (1991) J. Biol. Chem. 266, 17631-17639
12. Schrock, R. D., III, and Lloyd, R. S. (1993) J. Biol. Chem. 268, 880-886
13. Doi, T., Recktenwald, A., Karaki, Y., Kikuchi, M., Morikawa, K., Ikehara, M., Inaoka, T., Hori, N., and Ohtsuka, E. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 9420-9424
14. Hori, N., Doi, T., Karaki, Y., Kikuchi, M., Ikehara, M., and Ohtsuka, E. (1992) Nucleic Acids Res. 20, 4761-4764
15. Manuel, R. C., Latham, K. A., Dodson, M. L., and Lloyd, R. S. (1995) J. Biol. Chem. 270, 2652-2661
16. Dodson, M. L., Schrock, R. D., III, and Lloyd, R. S. (1993) Biochemistry 32, 8284-8290
17. Dodson, M. L., Michaels, M. L., and Lloyd, R. S. (1994) J. Biol. Chem. 269, 32709-32712
18. McCullough, A. K., Dodson, M. L., Scharer, O. D., and Lloyd, R. S. (1997) J. Biol. Chem. 272, 27210-27217
19. Zharkov, D. O., Rieger, R. A., Iden, C. R., and Grollman, A. P. (1997) J. Biol. Chem. 272, 5335-5341
20. Tchou, J., and Grollman, A. P. (1995) J. Biol. Chem. 270, 11671-11677
21. Zharkov, D. O., and Grollman, A. P. (1998) Biochemistry 37, 12384-12394
22. Ikeda, S., Biswas, T., Roy, R., Izumi, T., Boldogh, I., Kurosky, A., Sarker, A. H., Seki, S., and Mitra, S. (1998) J. Biol. Chem. 273, 21585-21593
23. McCullough, A. K., Romberg, M. T., Nyaga, S., Wei, Y., Wood, T. G., Taylor, J. S., Van Etten, J. L., Dodson, M. L., and Lloyd, R. S. (1998) J. Biol. Chem. 273, 13136-13142
24. Nicholls, A. Sharp, K., and Honig, B. (1991) Proteins Struct. Funct. Genet. 11, 281-296
25. Smith, C. A., and Taylor, J.-S. (1993) J. Biol. Chem. 268, 11143-11151
26. Jiang, D., Hatahet, Z., Melamede, R. J., Kow, Y. W., and Wallace, S. S. (1997) J. Biol. Chem. 272, 32230-32239
27. Castaing, B., Boiteux, S., and Zelwer, C. (1992) Nucleic Acids Res. 20, 389-394
28. McCullough, A. K., Scharer, O., Verdine, G. L., and Lloyd, R. S. (1996) J. Biol. Chem. 271, 32147-32152
29. Manuel, R. C., and Lloyd, H. S. (1997) Biochemistry 38, 11140-11152
30. Scharer, O. D., Deng, L., and Verdine, G. L. (1997) Curr. Opin. Chem. Biol. 1, 526-531
31. Dowd, D. R., and Lloyd, R. S. (1989) Biochemistry 28, 8699-8705
32. Dowd, D. R., and Lloyd, R. S. (1990) J. Biol. Chem. 285, 3424-3431
33. Dowd, D. R., and Lloyd, R. S. (1990) J. Mol. Biol. 208, 701-707