-
1
-
-
0032546743
-
Are there non-trivial dynamic cross-correlations in proteins?
-
Abseher R., Nilges M. Are there non-trivial dynamic cross-correlations in proteins? J. Mol. Biol. 279:1998;911-920.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 911-920
-
-
Abseher, R.1
Nilges, M.2
-
2
-
-
0032101346
-
Essential spaces defined by NMR structure ensembles and molecular dynamics simulation show significant overlap
-
Abseher R., Horstink L. M., Hilbers C. W., Nilges M. Essential spaces defined by NMR structure ensembles and molecular dynamics simulation show significant overlap. Proteins: Struct. Funct. Genet. 31:1998;370-382.
-
(1998)
Proteins: Struct. Funct. Genet.
, vol.31
, pp. 370-382
-
-
Abseher, R.1
Horstink, L.M.2
Hilbers, C.W.3
Nilges, M.4
-
3
-
-
0014963741
-
T4 bacteriophage gene32: A structural protein in the replication and recombination of DNA
-
Alberts B., Frey L. T4 bacteriophage gene32: a structural protein in the replication and recombination of DNA. Nature. 227:1970;1313-1318.
-
(1970)
Nature
, vol.227
, pp. 1313-1318
-
-
Alberts, B.1
Frey, L.2
-
4
-
-
0020695728
-
Fluorescence studies of the complex between the gene 5 protein of bacteriophage M13 and polynucleotides
-
Alma N. C. M., Harmsen B. J. M., de Jong E. A. M., Van de Ven J., Hilbers C. W. Fluorescence studies of the complex between the gene 5 protein of bacteriophage M13 and polynucleotides. J. Mol. Biol. 163:1983;47-62.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 47-62
-
-
Alma, N.C.M.1
Harmsen, B.J.M.2
De Jong, E.A.M.3
Van De Ven, J.4
Hilbers, C.W.5
-
7
-
-
0343697622
-
A protocol for the interpretation of side-chain dynamics based on NMR relaxation: Application to phenylalanines in antamanide
-
Bremi T., Brüschweiler R., Ernst R. R. A protocol for the interpretation of side-chain dynamics based on NMR relaxation: application to phenylalanines in antamanide. J. Am. Chem. Soc. 119:1997;4272-4284.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 4272-4284
-
-
Bremi, T.1
Brüschweiler, R.2
Ernst, R.R.3
-
8
-
-
0000411902
-
NMR order parameters of Biomolecules: A new analytical representation and application to the Gaussian axial fluctuation model
-
Brüschweiler R., Wright P. E. NMR order parameters of Biomolecules: a new analytical representation and application to the Gaussian axial fluctuation model. J. Am. Chem. Soc. 116:1994;8426-8427.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 8426-8427
-
-
Brüschweiler, R.1
Wright, P.E.2
-
9
-
-
0022367174
-
Specificity of the binding of bacteriophage M13 encoded gene-5 protein to DNA and RNA studied by means of fluorescence titrations
-
Bulsink H., Harmsen B. J. M., Hilbers C. W. Specificity of the binding of bacteriophage M13 encoded gene-5 protein to DNA and RNA studied by means of fluorescence titrations. J. Biomol. Struct. Dynam. 3:1985;227-247.
-
(1985)
J. Biomol. Struct. Dynam.
, vol.3
, pp. 227-247
-
-
Bulsink, H.1
Harmsen, B.J.M.2
Hilbers, C.W.3
-
10
-
-
0024094839
-
DNA-binding properties of gene-5 protein encoded by bacteriophage M13. 1. The kinetics of the dissociation of gene-5-protein - polynucleotide complexes upon addition of salt
-
Bulsink H., Harmsen B. J. M., Hilbers C. W. DNA-binding properties of gene-5 protein encoded by bacteriophage M13. 1. The kinetics of the dissociation of gene-5-protein - polynucleotide complexes upon addition of salt. Eur. J. Biochem. 176:1988;589-596.
-
(1988)
Eur. J. Biochem.
, vol.176
, pp. 589-596
-
-
Bulsink, H.1
Harmsen, B.J.M.2
Hilbers, C.W.3
-
11
-
-
0026684043
-
A 500 ps molecular dynamics simulation study of interleukin-1 in water
-
Chandrasekhar I., Clore G. M., Szabo A., Gronenborn A. M., Brooks B. R. A 500 ps molecular dynamics simulation study of interleukin-1 in water. J. Mol. Biol. 226:1992;239-250.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 239-250
-
-
Chandrasekhar, I.1
Clore, G.M.2
Szabo, A.3
Gronenborn, A.M.4
Brooks, B.R.5
-
12
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell W. D., Cieplak P., Bayly C. I., Gould I. R., Merz K. M. Jr, Ferguson D. M., Spellmeyer D. C., Fox T., Caldwell J. W., Kollman P. A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:1995;5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz K.M., Jr.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
13
-
-
33846823909
-
Particle mesh Ewald: A log(N) method for Ewald sums in large systems
-
Darden T., York D., Pedersen L. Particle mesh Ewald: a log(N) method for Ewald sums in large systems. J. Chem. Phys. 98:1993;10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
15
-
-
0027931807
-
Secondary structure of the single-stranded DNA binding protein encoded by filamentous phage Pf3 as determined by NMR
-
Folmer R. H. A., Folkers P. J. M., Kaan A., Jonker A. J., Aelen J. M. A., Konings R. N. H., Hilbers C. W. Secondary structure of the single-stranded DNA binding protein encoded by filamentous phage Pf3 as determined by NMR. Eur. J. Biochem. 224:1994a;663-676.
-
(1994)
Eur. J. Biochem.
, vol.224
, pp. 663-676
-
-
Folmer, R.H.A.1
Folkers, P.J.M.2
Kaan, A.3
Jonker, A.J.4
Aelen, J.M.A.5
Konings, R.N.H.6
Hilbers, C.W.7
-
16
-
-
0028066921
-
A model of the complex between single-stranded DNA and the single-stranded DNA binding protein encoded by gene V of filamentous bacteriophage M13
-
Folmer R. H. A., Nilges M., Folkers P. J. M., Konings R. N. H., Hilbers C. W. A model of the complex between single-stranded DNA and the single-stranded DNA binding protein encoded by gene V of filamentous bacteriophage M13. J. Mol. Biol. 240:1994b;341-357.
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 341-357
-
-
Folmer, R.H.A.1
Nilges, M.2
Folkers, P.J.M.3
Konings, R.N.H.4
Hilbers, C.W.5
-
17
-
-
0029088520
-
Solution structure of the single-stranded DNA binding protein of the filamentous Pseudomonas phage Pf3. Similarity to other proteins binding to single-stranded nucleic acids
-
Folmer R. H. A., Nilges M., Konings R. N. H., Hilbers C. W. Solution structure of the single-stranded DNA binding protein of the filamentous Pseudomonas phage Pf3. Similarity to other proteins binding to single-stranded nucleic acids. EMBO J. 14:1995;4132-4142.
-
(1995)
EMBO J.
, vol.14
, pp. 4132-4142
-
-
Folmer, R.H.A.1
Nilges, M.2
Konings, R.N.H.3
Hilbers, C.W.4
-
18
-
-
0030872558
-
Refined structure, DNA binding studies, and dynamics of the bacteriophage Pf3 encoded single-stranded DNA binding protein
-
Folmer R. H. A., Nilges M., Papavoine C. H. M., Harmsen B. J. M., Konings R. N. H., Hilbers C. W. Refined structure, DNA binding studies, and dynamics of the bacteriophage Pf3 encoded single-stranded DNA binding protein. Biochemistry. 36:1997;9120-9135.
-
(1997)
Biochemistry
, vol.36
, pp. 9120-9135
-
-
Folmer, R.H.A.1
Nilges, M.2
Papavoine, C.H.M.3
Harmsen, B.J.M.4
Konings, R.N.H.5
Hilbers, C.W.6
-
19
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hünenberger P. H., Mark A. E., van Gunsteren W. F. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J. Mol. Biol. 252:1995;492-503.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 492-503
-
-
Hünenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
20
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch W. A solution for the best rotation to relate two sets of vectors. Acta Crystallog. sect. A. 32:1976;922-923.
-
(1976)
Acta Crystallog. Sect. a
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
21
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
-
Lipari G., Szabo A. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity. J. Am. Chem. Soc. 104:1982a;4546-4559.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
22
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
-
Lipari G., Szabo A. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results. J. Am. Chem. Soc. 104:1982b;4559-4570.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
23
-
-
0001654813
-
Filamentous bacteriophage
-
R. Calender. New York: Plenum Publishing Corp.
-
Model P., Russel M. Filamentous bacteriophage. Calender R. The Bacteriophages. 1988;375-456 Plenum Publishing Corp. New York.
-
(1988)
The Bacteriophages
, pp. 375-456
-
-
Model, P.1
Russel, M.2
-
24
-
-
2442460927
-
Molecular dynamics Analysis of NMR relaxation in a zinc-finger peptide
-
Palmer A. G. III, Case D. A. Molecular dynamics Analysis of NMR relaxation in a zinc-finger peptide. J. Am. Chem. Soc. 114:1992;9059-9067.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 9059-9067
-
-
Palmer A.G. III1
Case, D.A.2
-
26
-
-
0004279414
-
-
San Francisco: University of California
-
Pearlman D. A., Case D. A., Caldwell J. W., Ross W. S., Cheatham T. E. III, Ferguson D. M., Seibel G. L., Chandra Singh U., Weiner P. K., Kollman P. A. AMBER 4.1. 1995;University of California, San Francisco.
-
(1995)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham T.E. III5
Ferguson, D.M.6
Seibel, G.L.7
Chandra, S.U.8
Weiner, P.K.9
Kollman, P.A.10
-
27
-
-
0029562951
-
Molecular dynamics simulation of E. coli ribonuclease H1 in solution: Correlation with NMR and X-ray data and insights into biological function
-
Philippopoulos M., Lim C. Molecular dynamics simulation of E. coli ribonuclease H1 in solution: correlation with NMR and X-ray data and insights into biological function. J. Mol. Biol. 254:1995;771-792.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 771-792
-
-
Philippopoulos, M.1
Lim, C.2
-
28
-
-
0027421536
-
Characterization of the Pf3 single-strand DNA binding protein by circular dichroism spectroscopy
-
Powell M. D., Gray D. M. Characterization of the Pf3 single-strand DNA binding protein by circular dichroism spectroscopy. Biochemistry. 32:1993;12538-12547.
-
(1993)
Biochemistry
, vol.32
, pp. 12538-12547
-
-
Powell, M.D.1
Gray, D.M.2
-
29
-
-
0029004769
-
Role of Tyr-22 in the binding of Pf3 ssDNA binding protein to nucleic acids
-
Powell M. D., Gray D. M. Role of Tyr-22 in the binding of Pf3 ssDNA binding protein to nucleic acids. Biochemistry. 34:1995;5635-5643.
-
(1995)
Biochemistry
, vol.34
, pp. 5635-5643
-
-
Powell, M.D.1
Gray, D.M.2
-
30
-
-
0029128264
-
Refined solution structure of the Tyr41-His mutant of the M13 gene-V protein. A comparison with the crystal structure
-
Prompers J. J., Folmer R. H. A., Nilges M., Folkers P. J. M., Konings R. N. H., Hilbers C. W. Refined solution structure of the Tyr41-His mutant of the M13 gene-V protein. A comparison with the crystal structure. Eur. J. Biochem. 232:1995;506-514.
-
(1995)
Eur. J. Biochem.
, vol.232
, pp. 506-514
-
-
Prompers, J.J.1
Folmer, R.H.A.2
Nilges, M.3
Folkers, P.J.M.4
Konings, R.N.H.5
Hilbers, C.W.6
-
31
-
-
0028325221
-
Structure of the gene V protein of bacteriophage f1 determined by multiwavelength X-ray diffraction on the selenomethionyl protein
-
Skinner M. M., Zhang H., Leschnitzer D. H., Guan Y., Bellamy H., Sweet R. M., Gray C. W., Konings R. N. H., Wang A. H.-J., Terwilliger T. C. Structure of the gene V protein of bacteriophage f1 determined by multiwavelength X-ray diffraction on the selenomethionyl protein. Proc. Natl Acad. Sci. USA. 91:1994;2071-2075.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 2071-2075
-
-
Skinner, M.M.1
Zhang, H.2
Leschnitzer, D.H.3
Guan, Y.4
Bellamy, H.5
Sweet, R.M.6
Gray, C.W.7
Konings, R.N.H.8
Wang, A.H.-J.9
Terwilliger, T.C.10
-
32
-
-
0028986918
-
Internal mobility of the basic pancreatic trypsin inhibitor in solution: A comparison of NMR spin relaxation measurements and molecular dynamics simulations
-
Smith P. E., van Schaik R. C., Szyperski T., Wüthrich K., van Gunsteren W. F. Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison of NMR spin relaxation measurements and molecular dynamics simulations. J. Mol. Biol. 246:1995;356-365.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 356-365
-
-
Smith, P.E.1
Van Schaik, R.C.2
Szyperski, T.3
Wüthrich, K.4
Van Gunsteren, W.F.5
-
33
-
-
0032080281
-
Ligand-induced domain movement in an antibody Fab: Molecular dynamics studies confirm the unique domain movement observed experimentally for fab NC6.8 upon complexation and reveal its segmental flexibility
-
Sotriffer C. A., Liedl K. R., Linthicum D. S., Rode B. M., Varga J. M. Ligand-induced domain movement in an antibody Fab: molecular dynamics studies confirm the unique domain movement observed experimentally for fab NC6.8 upon complexation and reveal its segmental flexibility. J. Mol. Biol. 278:1998;301-306.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 301-306
-
-
Sotriffer, C.A.1
Liedl, K.R.2
Linthicum, D.S.3
Rode, B.M.4
Varga, J.M.5
-
34
-
-
0026607453
-
Selection and characterization of randomly produced mutants of gene V protein of bacteriophage M13
-
Stassen A. P. M., Zaman G. J. R., Van Deursen J. M. A., Schoenmakers J. G. G., Konings R. N. H. Selection and characterization of randomly produced mutants of gene V protein of bacteriophage M13. Eur. J. Biochem. 204:1992;1003-1014.
-
(1992)
Eur. J. Biochem.
, vol.204
, pp. 1003-1014
-
-
Stassen, A.P.M.1
Zaman, G.J.R.2
Van Deursen, J.M.A.3
Schoenmakers, J.G.G.4
Konings, R.N.H.5
-
35
-
-
84946450438
-
Algorithms for macromolecular dynamics and constraint dynamics
-
van Gunsteren W. F., Berendsen H. J. C. Algorithms for macromolecular dynamics and constraint dynamics. Mol. Phys. 34:1977;1311-1327.
-
(1977)
Mol. Phys.
, vol.34
, pp. 1311-1327
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
36
-
-
0025398721
-
WHAT IF: A molecular modelling and drug design program
-
Vriend G. WHAT IF: a molecular modelling and drug design program. J. Mol. Graph. 8:1990;52-56.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
37
-
-
36049058132
-
Statistical error due to finite time averaging in computer experiments
-
Zwanzig R., Ailawadi N. Statistical error due to finite time averaging in computer experiments. Phys. Rev. 182:1969;280-283.
-
(1969)
Phys. Rev.
, vol.182
, pp. 280-283
-
-
Zwanzig, R.1
Ailawadi, N.2
|