Selectively infective phage (SIP) technology: Scope and limitations

Journal of Immunological Methods

Volumn 231, Issue 1-2, 1999, Pages 93-104

  Jung, Sabine ^a   Arndt, Katja M ^a   Müller, Kristian M ^a   Plückthun, Andreas ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Affinity maturation; Disulfide bonds; Phage display; ScFv fragments

Indexed keywords

ARTICLE; BINDING AFFINITY; DISULFIDE BOND; LIGAND BINDING; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN STABILITY;

BACTERIOPHAGE M13; DNA-BINDING PROTEINS; HUMANS; PEPTIDE LIBRARY; RECOMBINATION, GENETIC; VIRAL FUSION PROTEINS;

EID: 0033499651     PISSN: 00221759     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-1759(99)00143-X     Document Type: Article

References (38)

1. Armstrong, J., Perham, R.N., Walker, J.E., 1981. Domain structure of bacteriophage fd adsorption protein. FEBS Lett. 135, 167.
2. Brady, R.L., Edwards, D.J., Hubbard, R.E., Jiang, J.S., Lange, G., Roberts, S.M., Todd, R.J., Adair, J.R., Emtage, J.S., King, D.J., Low, D.C., 1992. Crystal structure of a chimeric Fab' fragment of an antibody binding tumour cells. J. Mol. Biol. 227, 253.
3. Carcamo, J., Ravera, M.W., Brissette, R., Dedova, O., Beasley, J.R., Alam-Moghe, A., Wan, C., Blume, A., Mandecki, W., 1998. Unexpected frameshifts from gene to expressed protein in a phage-displayed peptide library. Proc. Natl. Acad. Sci. U.S.A. 95, 11146.
4. Click, E.M., Webster, R.E., 1997. Filamentous phage infection: required interactions with the TolA protein. J. Bacteriol. 179, 6464.
5. Click, E.M., Webster, R.E., 1998. The TolQRA proteins are required for membrane insertion of the major capsid protein of the filamentous phage f1 during infection. J. Bacteriol. 180, 1723.
6. Crissman, J.W., Smith, G.P., 1984. Gene-III protein of filamentous phages: evidence for a carboxyl-terminal domain with a role in morphogenesis. Virology 132, 445.
7. Deng, L.W., Malik, P., Perham, R.N., 1999. Interaction of the globular domains of pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli. Virology 253, 271.
8. Desplancq, D., King, D.J., Lawson, A.D., Mountain, A., 1994. Multimerization behaviour of single chain Fv variants for the tumour-binding antibody B72.3. Protein Eng. 7, 1027.
9. Dueñas, M., Borrebaeck, C.A., 1994. Clonal selection and amplification of phage displayed antibodies by linking antigen recognition and phage replication. Biotechnology 12, 999.
10. Dueñas, M., Malmborg, A.C., Casalvilla, R., Ohlin, M., Borrebaeck, C.A., 1996. Selection of phage displayed antibodies based on kinetic constants. Mol. Immunol. 33, 279.
11. Enea, V., Zinder, N.D., 1982. Interference resistant mutants of phage f1. Virology 122, 222.
12. Gao, C., Lin, C.H., Lo, C.H.L., Mao, S., Wirsching, P., Lerner, R.A., Janda, K.D., 1997. Making chemistry selectable by linking it to infectivity. Proc. Natl. Acad. Sci. U.S.A. 94, 11777.
13. Gramatikoff, K., Georgiev, O., Schaffner, W., 1994. Direct interaction rescue, a novel filamentous phage technique to study protein-protein interactions. Nucleic Acids Res. 22, 5761.
14. Gramatikoff, K., Schaffner, W., Georgiev, O., 1995. The leucine zipper of c-Jun binds to ribosomal protein L18a: a role in Jun protein regulation? Biol. Chem. 376, 321.
15. Hennecke, F., Krebber, C., Plückthun, A., 1998. Non-repetitive single-chain Fv linkers selected by selectively infective phage (SIP) technology. Protein Eng. 11, 405.
16. Holliger, P., Riechmann, L., 1997. A conserved infection pathway for filamentous bacteriophages is suggested by the structure of the membrane penetration domain of the minor coat protein g3p from phage fd. Structure 5, 265.
17. Holliger, P., Riechmann, L., Williams, R.L., 1999. Crystal structure of the two N-terminal domains of g3p from filamentous phage fd at 1.9 Å: evidence for conformational lability. J. Mol. Biol., in press.
18. Jacobsson, K., Frykberg, L., 1998. Gene VIII-based, phage-display vectors for selection against complex mixtures of ligands. Biotechniques 24, 294.
19. Jakes, K.S., Davis, N.G., Zinder, N.D., 1988. A hybrid toxin from bacteriophage f1 attachment protein and colicin E3 has altered cell receptor specificity. J. Bacteriol. 170, 4231.
20. Krebber, C., Spada, S., Desplancq, D., Plückthun, A., 1995. Co-selection of cognate antibody-antigen pairs by selectively infective phages. FEBS Lett. 377, 227.
21. Krebber, C., Spada, S., Desplancq, D., Krebber, A., Ge, L., Plückthun, A., 1997. Selectively infective phage (SIP): a mechanistic dissection of a novel in vivo selection for protein-ligand interactions. J. Mol. Biol. 268, 607.
22. Kristensen, P., Winter, G., 1998. Proteolytic selection for protein folding using filamentous bacteriophages. Folding Des. 3, 321.
23. Lubkowski, J., Hennecke, F., Plückthun, A., Wlodawer, A., 1998. The structural basis of phage display elucidated by the crystal structure of the N-terminal domains of g3p. Nat. Struct. Biol. 5, 140.
24. Lubkowski, J., Hennecke, F., Plückthun, A., Wlodawer, A., 1999. Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. Structure 7, 711.
25. Marvin, D.A., 1998. Filamentous phage structure, infection and assembly. Curr. Opin. Struct. Biol. 8, 150-158.
26. Nelson, F.K., Friedman, S.M., Smith, G.P., 1981. Filamentous phage DNA cloning vectors: a noninfective mutant with a nonpolar deletion in gene III. Virology 108, 338.
27. Pedrazzi, G., Schwesinger, F., Honegger, A., Krebber, C., Plückthun, A., 1997. Affinity and folding properties both influence the selection of antibodies with the selectively infective phage (SIP) methodology. FEBS Lett. 415, 289.
28. Riechmann, L., Holliger, P., 1997. The C-terminal domain of TolA is the coreceptor for filamentous phage infection of E. coli. Cell 90, 351.
29. Rini, J.M., Schulze-Gahmen, U., Wilson, I.A., 1992. Structural evidence for induced fit as a mechanism for antibody-antigen recognition. Science 255, 959.
30. Rudert, F., Woltering, C., Frisch, C., Rottenberger, C., Ilag, L.L., 1998. A phage-based system to select multiple protein-protein interactions simultaneously from combinatorial libraries. FEBS Lett. 440, 135.
31. Russel, M., Whirlow, H., Sun, T.P., Webster, R.E., 1988. Low-frequency infection of F-bacteria by transducing particles of filamentous bacteriophages. J. Bacteriol. 170, 5312.
32. Schulze-Gahmen, U., Rini, J.M., Wilson, I.A., 1993. Detailed analysis of the free and bound conformations of an antibody. X-ray structures of Fab 17/9 and three different Fab-peptide complexes. J. Mol. Biol. 234, 1098.
33. Sieber, V., Plückthun, A., Schmid, F.X., 1998. Selecting proteins with improved stability by a phage-based method. Nat. Biotechnol. 16, 955.
34. Spada, S., Honegger, A., Plückthun, A., 1998. Reproducing the natural evolution of protein structural features with the selectively infective phage (SIP) technology. The kink in the first strand of antibody kappa domains. J. Mol. Biol. 283, 395.
35. Spanjaard, R.A., van Duin, J., 1988. Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proc. Natl. Acad. Sci. U.S.A. 85, 7967.
36. Stengele, I., Bross, P., Garces, X., Giray, J., Rasched, I., 1990. Dissection of functional domains in phage fd adsorption protein. Discrimination between attachment and penetration sites. J. Mol. Biol. 212, 143.
37. Vaughan, T.J., Williams, A.J., Pritchard, K., Osbourn, J.K., Pope, A.R., Earnshaw, J.C., McCafferty, J., Hodits, R.A., Wilton, J., Johnson, K.S., 1996. Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library. Nat. Biotechnol. 14, 309.
38. Winter, G., Griffiths, A.D., Hawkins, R.E., Hoogenboom, H.R., 1994. Making antibodies by phage display technology. Annu. Rev. Immunol. 12, 433.