Rapid and sensitive identification of Pratylenchus spp. using reverse dot blot hybridization

Nematology

Volumn 1, Issue 5, 1999, Pages 549-555

  Uehara, Taketo ^a   Kushida, Atsuhiko ^a   Momota, Yoji ^a  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

Author keywords

ITS sequences; Nematode; P loosi; P. coffeae; P. crenatus; P. penetrans; P. vulnus; P. zeae; Pratylenchus brachyurus

Indexed keywords

BACTERIUM IDENTIFICATION; DOT HYBRIDIZATION; INTERNAL TRANSCRIBED SPACER; OLIGONUCLEOTIDE; POLYMERASE CHAIN REACTION; REVERSE DOT BLOT HYBRIDIZATION;

GENETIC ANALYSIS; IDENTIFICATION METHOD; NEMATODE;

NEMATODA; PRATYLENCHUS BRACHYURUS; PRATYLENCHUS COFFEAE; PRATYLENCHUS CRENATUS; PRATYLENCHUS LOOSI; PRATYLENCHUS PENETRANS; PRATYLENCHUS VULNUS; PRATYLENCHUS ZEAE;

EID: 0033494011     PISSN: 13885545     EISSN: None     Source Type: Journal    
DOI: 10.1163/156854199508441     Document Type: Article

References (25)

1. ABE, A., KITAGAWA, M., IKUTA, Y., MIYAKOSHI, S., DANBARA, H., KASHIWAGI, N. & OBATA, F. (1992). Rapid DNA typing utilizing immobilized oligonucleotide probe and a nonradioactive detection system. Journal of Immunological Methods 154, 205-210.
2. APPEL, D.J. & GORDON, T.R. (1996). Relationships among pathogenic and non pathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of ribosomal DNA. Molecular Plant-Microbe Interactions 9, 125-138.
3. BAUM, T.J., LEWIS, S.A. & DEAN, R.A. (1994). Isolation characterization, and application of DNA probes specific to Meloidogyne arenaria. Phytopathology 84, 489-494.
4. CHACÓN, M.R., PARKHOUSE, M., BURROWS, P. & GÁRATE, T. (1993). The use of digoxigenin-labelled synthetic DNA oligonucleotide for the rapid and sensitive identification of Meloidogyne incognita. Fundamental and Applied Nematology 16, 495-499.
5. EHRMANN, M., LUDWIG, W. & SCHLEIFER, K.H. (1994). Reverse dot blot hybridization: a useful method for the directed identification of lactic acid bacteria in fermented food. FEMS Microbiology Letters 117, 143-150.
6. FERRIS, V.R., FERRIS, J.M. & FAGHIHI, J. (1993). Variation in spacer ribosomal DNA in some cyst-forming species of plant parasitic nematodes. Fundamental and Applied Nematology 16, 177-184.
7. FERRIS, V.R., FERRIS, J.F., FAGHIHI, J. & IREHOLM, A. (1994). Comparisons of isolates of Heterodera avenue using 2-D PAGE protein patterns and ribosomal DNA. Journal of Nematology 26, 141-151.
8. FERRIS, V.R., MILLER, L.I., FAGHIHI, J. & FERRIS J.M. (1995). Ribosomal DNA comparisons Globodera from two continents. Journal of Nematology 27, 273-283.
9. IIDA, K., ABE, A., MATSUI, H., DANBARA, H., WAKAYAMA, S. & KAWAHARA, K. (1993). Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot blot hybridization. FEMS Microbiology Letters 114, 167-172.
10. LÉVESQUE, C.A., HARLTON, C.E. & DE COCK, A.W.A.M. (1998). Identification of some oomycetes by reverse dot blot hybridization. Phytopathology 88, 213-222.
11. MIZUKUBO, T. (1992). The classification, morphology and distribution of the genus Pratylenchus in Japan. In: Nakasono, K. (Ed.). Progress in nematology. Tsukuba, Japan, The Japanese Nematological Society, pp. 40-47.
12. ORUI, Y. (1996). Discrimination of the main Pratylenchus species (Nematode: Pratylenchidae) in Japan by PCR-RFLP analysis. Applied Entomology and Zoology 31, 505-514.
13. PETERSEN, D. & VRAIN, T.C. (1996). Rapid identification of Meloidogyne chitwoodi, M. hapla, and M. fallax using PCR primers to amplify their ribosomal intergenic spacer. Fundamental and Applied Nematology 19, 601-605.
14. PETERSEN, D.J., ZIJLSTRA, C., WISHERT, J., BLOK, V.C. & VRAIN, T.C. (1997). Specific probes efficiently distinguish root-knot nematodes species using signature sequences in ribosomal intergenic spacer. Fundamental and Applied Nematology 20, 619-626.
15. PIOTTE, C., CASTAGNONE-SERHNO, P., BONGIOVANNI, M., DALMASSO, A. & ABAD, P. (1995). Analysis of a satellite DNA from Meloidogyne hapla and its use as a diagnostic probe. Pytopathology 85, 458-462.
16. POTTER, J.W. & OLTHOF, T.H.A. (1993). Nematode pests of vegetable crops. In: Evans, K., Trudgill, D.L. & Webster, J.M. (Eds). Plant parasitic nematodes in temperate agriculture. Wallingford. UK, CAB International, pp. 171-207.
17. ROMAN, J. & HIRSCHMANN, H. (1969). Morphology and morphometrics of six species of Pratylenchus. Journal of Nematology 4, 363-386.
18. SETTERQUIST, R.A., SMITH, G.K., JONES, R. & Fox, G.E. (1996). Diagnostic probes targeting the major sperm protein gene that may be useful in the molecular identification of nematodes. Journal of Nematology 28, 414-421.
19. TARÉS, S., LEMONTEY, J-M., DE GUIRAN, G. & ABAD, P. (1994). Use of species-specific satellite DNA from Bursaphelenchus xylophilus as a diagnostic probe. Phytopathology 84, 294-298.
20. TARTE, R. & MAI, W.F. (1976). Morphological variation in Pratylenchus penetrans. Journal of Nematology 8, 185-195.
21. UEHARA, T., MIZUKUBO, T., KUSHIDA, A. & MOMOTA, Y. (1998a). Identification of Pratylenchus coffeae and P. loosi using specific primers for amplification of ribosomal DNA. Nematologica 44, 357-368.
22. UEHARA, T., MIZUKUBO, T., KUSHIDA, A. & MOMOTA, Y. (1998b). Identification of Pratylenchus penetrans using specific primer sets for PCR based on ITS regions sequences. Japanese Journal of Nematology 28, 1-7.
23. VRAIN, T.C., WAKARCHUK, D.A., LÉVESQUE, A.C. & HAMILTON, R.I. (1992). Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology 15, 563-573.
24. ZIJLSTRA, C. (1997). A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi, and M. fallax, and to sensitively differentiate them from each other and from M. incognita in mixtures. Fundamental and Applied Nematology 20, 505-511.
25. ZIJLSTRA, C., LEVER, A.E.M., UENK, B.J. & VAN SILFHOUT, C.H. (1995). Differences between ITS regions of isolates of root-knot nematodes Meloidogyne hapla and M. chitwoodi. Phytopathology 85, 1231-1237.