-
2
-
-
0014689979
-
Role of a Buried Acid Group in the Mechanism of Action of Chymotrypsin
-
D. M. Blow, J. J. Birktoft, and B. S. Hartley, Nature, 221, 337 (1969). Role of a Buried Acid Group in the Mechanism of Action of Chymotrypsin.
-
(1969)
Nature
, vol.221
, pp. 337
-
-
Blow, D.M.1
Birktoft, J.J.2
Hartley, B.S.3
-
3
-
-
0015219513
-
The Prototropic Behavior of α-chymotrypsin and Chymotrypsinogen in Water and Formaldehyde
-
M. A. Marini and C. J. Martin, Eur. J. Biochem., 19, 162 (1971). The Prototropic Behavior of α-Chymotrypsin and Chymotrypsinogen in Water and Formaldehyde.
-
(1971)
Eur. J. Biochem.
, vol.19
, pp. 162
-
-
Marini, M.A.1
Martin, C.J.2
-
4
-
-
0015450251
-
A Competitive Labelling Method for Determining the Ionization Constants and Reactivity of Individual Histidine Residues in Proteins
-
W. H. Cruickshank and H. Kaplan, Biochem. J., 130, 1125 (1972). A Competitive Labelling Method for Determining the Ionization Constants and Reactivity of Individual Histidine Residues in Proteins.
-
(1972)
Biochem. J.
, vol.130
, pp. 1125
-
-
Cruickshank, W.H.1
Kaplan, H.2
-
5
-
-
0015737281
-
Ionization Behavior of the Histidine Residue in the Catalytic Triad of Serine Proteases
-
M. W. Hunkapiller, S. H. Smallcombe, D. R. Whitaker, and J. H. Richards, J. Biol. Chem., 248, 8306 (1973). Ionization Behavior of the Histidine Residue in the Catalytic Triad of Serine Proteases.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 8306
-
-
Hunkapiller, M.W.1
Smallcombe, S.H.2
Whitaker, D.R.3
Richards, J.H.4
-
6
-
-
0015935205
-
The Charge Relay System in Chymotrypsin and Chymotrypsinogen
-
A. R. Fersht and J. Sperling, J. Mol. Biol., 74, 137 (1973). The Charge Relay System in Chymotrypsin and Chymotrypsinogen.
-
(1973)
J. Mol. Biol.
, vol.74
, pp. 137
-
-
Fersht, A.R.1
Sperling, J.2
-
7
-
-
0019889789
-
Direct Determination of the Protonation States of Aspartic Acid-102 and Histidme-37 in the Tetrahedral Intermediate of the Serine Proteases: Neutron Structure of Trypsin
-
A. A. Kossiakoff and S. A. Spencer, Biochemistry, 20, 6462 (1981). Direct Determination of the Protonation States of Aspartic Acid-102 and Histidme-37 in the Tetrahedral Intermediate of the Serine Proteases: Neutron Structure of Trypsin.
-
(1981)
Biochemistry
, vol.20
, pp. 6462
-
-
Kossiakoff, A.A.1
Spencer, S.A.2
-
8
-
-
0024538543
-
How Do Serine Proteases Really Work?
-
A. Warshel, G. Naray-Szabo, F. Sussman, and J.-K. Hwang, Biochemistry, 28, 3629 (1989). How Do Serine Proteases Really Work?
-
(1989)
Biochemistry
, vol.28
, pp. 3629
-
-
Warshel, A.1
Naray-Szabo, G.2
Sussman, F.3
Hwang, J.-K.4
-
9
-
-
0030755235
-
On the Mechanism of Acetylcholinesterase Action: The Electrostatically Induced Acceleration of the Catalytic Acylation Step
-
S. T. Wlodek, J. Antosiewicz, and J. M. Briggs, J. Am. Chem. Soc., 119, 8159 (1997). On the Mechanism of Acetylcholinesterase Action: The Electrostatically Induced Acceleration of the Catalytic Acylation Step.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 8159
-
-
Wlodek, S.T.1
Antosiewicz, J.2
Briggs, J.M.3
-
10
-
-
0026749389
-
Faster Superoxide Dismutase Mutants Designed by Enhancing Electrostatic Guidance
-
E. D. Getzoff, D. E. Cabelli, C. L. Fisher, H. E. Parge, M. S. Viezzoli, L. Banci, and R. A. Hallewell, Nature, 358, 347 (1992). Faster Superoxide Dismutase Mutants Designed by Enhancing Electrostatic Guidance.
-
(1992)
Nature
, vol.358
, pp. 347
-
-
Getzoff, E.D.1
Cabelli, D.E.2
Fisher, C.L.3
Parge, H.E.4
Viezzoli, M.S.5
Banci, L.6
Hallewell, R.A.7
-
11
-
-
0025271463
-
PH Dependence of the Urea and Guanidine Hydrochloride Denaturation of Ribonuclease a and Ribonuclease T1
-
C. N. Pace, D. V. Laurents, and J. A. Thomson, Biochemistry, 29, 2564 (1990). pH Dependence of the Urea and Guanidine Hydrochloride Denaturation of Ribonuclease A and Ribonuclease T1.
-
(1990)
Biochemistry
, vol.29
, pp. 2564
-
-
Pace, C.N.1
Laurents, D.V.2
Thomson, J.A.3
-
12
-
-
0025234587
-
pH-induced Denaturation of Proteins: A Single Salt Bridge Contributes 3-5 kcal/mol to the Free Energy of Folding of T4 Lysozyme
-
D. E. Anderson, W. J. Becktel, and F. W. Dahlquist, Biochemistry, 29, 2403-2408 (1990). pH-Induced Denaturation of Proteins: A Single Salt Bridge Contributes 3-5 kcal/mol to the Free Energy of Folding of T4 Lysozyme.
-
(1990)
Biochemistry
, vol.29
, pp. 2403-2408
-
-
Anderson, D.E.1
Becktel, W.J.2
Dahlquist, F.W.3
-
13
-
-
0026314673
-
Electrostatic Effects in Protein Folding, Stability, and Function
-
N. M. Allewell and H. Oberoi, Methods Enzymol., 202, 3 (1991). Electrostatic Effects in Protein Folding, Stability, and Function.
-
(1991)
Methods Enzymol.
, vol.202
, pp. 3
-
-
Allewell, N.M.1
Oberoi, H.2
-
14
-
-
0019317512
-
Effective Charge on Acetylcholinesterase Active Sites Determined from the Ionic Strength Dependence of Association Rate Constants with Canonic Ligands
-
H.-J. Nolte, T. L. Rosenberry, and E. Neumann, Biochemistry, 19, 3705 (1980). Effective Charge on Acetylcholinesterase Active Sites Determined from the Ionic Strength Dependence of Association Rate Constants with Canonic Ligands.
-
(1980)
Biochemistry
, vol.19
, pp. 3705
-
-
Nolte, H.-J.1
Rosenberry, T.L.2
Neumann, E.3
-
15
-
-
0040745056
-
The Role of Electrostatics in the Binding of Small Ligands to Enzymes
-
T. Head-Gordon and C. L. Brooks, J. Phys. Chem., 91, 3342 (1987). The Role of Electrostatics in the Binding of Small Ligands to Enzymes.
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 3342
-
-
Head-Gordon, T.1
Brooks, C.L.2
-
16
-
-
0020492960
-
Anion Binding and pH-dependent Electrostatic Effects in Ribonuclease
-
J. B. Matthew and F. M. Richards, Biochemistry, 21, 4989 (1982). Anion Binding and pH-Dependent Electrostatic Effects in Ribonuclease.
-
(1982)
Biochemistry
, vol.21
, pp. 4989
-
-
Matthew, J.B.1
Richards, F.M.2
-
17
-
-
0025110479
-
Point Charge Distributions and Electrostatic Steering in Enzyme/Substrate Encounter: Brownian Dynamics of Modified Copper/Zinc Superoxide Dismutase
-
J. J. Sines, S. A. Allison, and J. A. McCammon, Biochemistry, 29, 9403 (1990). Point Charge Distributions and Electrostatic Steering in Enzyme/Substrate Encounter: Brownian Dynamics of Modified Copper/Zinc Superoxide Dismutase.
-
(1990)
Biochemistry
, vol.29
, pp. 9403
-
-
Sines, J.J.1
Allison, S.A.2
McCammon, J.A.3
-
18
-
-
0027231258
-
On the pH Dependence of Protein Stability
-
A-S. Yang and B. Honig, J. Mol. Biol., 231, 459 (1993). On the pH Dependence of Protein Stability.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 459
-
-
Yang, A.-S.1
Honig, B.2
-
20
-
-
0001482287
-
Quantification of Solvent Effects on the Acidities of Z and e Esters from Fluid Simulations
-
J. D. Evanseck, K. N. Houk, J. M. Briggs, and W. L. Jorgensen, J. Am. Chem. Soc., 116, 10630 (1994). Quantification of Solvent Effects on the Acidities of Z and E Esters from Fluid Simulations.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 10630
-
-
Evanseck, J.D.1
Houk, K.N.2
Briggs, J.M.3
Jorgensen, W.L.4
-
23
-
-
84962360842
-
Energetics of Acid-base Equilibria in Aqueous Solution. MNDO, AM1 and PM3 Results for Compounds with Functionalities Analogous to the Nucleic Acids
-
G. P. Ford and B. Wang, THEOCHEM, 102, 49 (1993). Energetics of Acid-Base Equilibria in Aqueous Solution. MNDO, AM1 and PM3 Results for Compounds with Functionalities Analogous to the Nucleic Acids.
-
(1993)
THEOCHEM
, vol.102
, pp. 49
-
-
Ford, G.P.1
Wang, B.2
-
24
-
-
84962339016
-
Protonation Enthalpies in Fluorosulfonic Acid Using Ab Initio Self-consistent Reaction Field Theory
-
N. J. Harris, T. Ohwada, and K. Lammertsma, J. Comput. Chem., 19, 250 (1998). Protonation Enthalpies in Fluorosulfonic Acid Using Ab Initio Self-Consistent Reaction Field Theory.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 250
-
-
Harris, N.J.1
Ohwada, T.2
Lammertsma, K.3
-
25
-
-
85050517685
-
Molecular Surfaces
-
K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York
-
P. G. Mezey, in Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1990, Vol. 1, pp. 265-294. Molecular Surfaces.
-
(1990)
Reviews in Computational Chemistry
, vol.1
, pp. 265-294
-
-
Mezey, P.G.1
-
26
-
-
85050521214
-
Biological Applications of Electrostatic Calculations and Brownian Dynamics Simulations
-
K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York
-
J. D. Madura, M. E. Davis, M. K. Gilson, R. C. Wade, B. A. Luty, and J. A. McCammon, in Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1994, Vol. 5, pp. 229-267. Biological Applications of Electrostatic Calculations and Brownian Dynamics Simulations.
-
(1994)
Reviews in Computational Chemistry
, vol.5
, pp. 229-267
-
-
Madura, J.D.1
Davis, M.E.2
Gilson, M.K.3
Wade, R.C.4
Luty, B.A.5
McCammon, J.A.6
-
27
-
-
4243463817
-
Electrostatics in Biomolecular Structure and Dynamics
-
M. E. Davis and J. A. McCammon, Chem. Rev., 90, 509 (1990). Electrostatics in Biomolecular Structure and Dynamics.
-
(1990)
Chem. Rev.
, vol.90
, pp. 509
-
-
Davis, M.E.1
McCammon, J.A.2
-
28
-
-
0025197061
-
s of Ionizable Groups in Proteins: Atomic Detail from a Continuum Electrostatic Model
-
s of Ionizable Groups in Proteins: Atomic Detail from a Continuum Electrostatic Model.
-
(1990)
Biochemistry
, vol.29
, pp. 10219
-
-
Bashford, D.1
Karplus, M.2
-
29
-
-
33751499830
-
Multiple-site Titration Curves of Proteins: An Analysis of Exact and Approximate Methods for Their Calculation
-
D. Bashford and M. Karplus, J. Phys. Chem., 95, 9556 (1991). Multiple-Site Titration Curves of Proteins: An Analysis of Exact and Approximate Methods for Their Calculation.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 9556
-
-
Bashford, D.1
Karplus, M.2
-
30
-
-
0026095641
-
Protonation of Interacting Residues in a Protein by a Monte Carlo Method: Application to Lysozyme and the Photosynthetic Reaction Center of Rhodobacter sphaeroides
-
P. Beroza, D. R. Fredkin, M. Y. Okamura, and G. Feher, Proc. Natl. Acad. Sci. U.S.A., 88, 5804 (1991). Protonation of Interacting Residues in a Protein by a Monte Carlo Method: Application to Lysozyme and the Photosynthetic Reaction Center of Rhodobacter sphaeroides.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 5804
-
-
Beroza, P.1
Fredkin, D.R.2
Okamura, M.Y.3
Feher, G.4
-
33
-
-
0015520587
-
Interpretation of Protein Titration Curves: Application to Lysozyme
-
C. Tanford and R. Roxby, Biochemistry, 11, 2192 (1972). Interpretation of Protein Titration Curves: Application to Lysozyme.
-
(1972)
Biochemistry
, vol.11
, pp. 2192
-
-
Tanford, C.1
Roxby, R.2
-
34
-
-
0028305457
-
Prediction of pH-dependent Properties of Proteins
-
J. Antosiewicz, J. A. McCammon, and M. K. Gilson, J. Mol. Biol., 238, 415 (1994). Prediction of pH-Dependent Properties of Proteins.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 415
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
35
-
-
0027477251
-
Multiple-site Titration and Molecular Modeling: Two Rapid Methods for Computing Energies and Forces for Ionizable Groups in Proteins
-
M. K. Gibson, Proteins: Struct., Funct., Genet., 15, 266 (1993). Multiple-Site Titration and Molecular Modeling: Two Rapid Methods for Computing Energies and Forces for Ionizable Groups in Proteins.
-
(1993)
Proteins: Struct., Funct., Genet.
, vol.15
, pp. 266
-
-
Gibson, M.K.1
-
36
-
-
0024788820
-
The Nature of Protein Dipole Moments: Experimental and Calculated Permanent Dipole of α-chymotrypsin
-
J. Antosiewicz and D. Pörschke, Biochemistry, 28, 10072 (1989). The Nature of Protein Dipole Moments: Experimental and Calculated Permanent Dipole of α-Chymotrypsin.
-
(1989)
Biochemistry
, vol.28
, pp. 10072
-
-
Antosiewicz, J.1
Pörschke, D.2
-
37
-
-
0027209697
-
Multigrid Solution of the Nonlinear Poisson-boltzmann Equation and Calculation of Titration Curves
-
H. Oberoi and N. M. Allewell, Biophys. J., 65, 48 (1993). Multigrid Solution of the Nonlinear Poisson-Boltzmann Equation and Calculation of Titration Curves.
-
(1993)
Biophys. J.
, vol.65
, pp. 48
-
-
Oberoi, H.1
Allewell, N.M.2
-
38
-
-
0028197606
-
Improved Continuum Electrostatic Modelling in Proteins, with Comparison to Experiment
-
J. Warwicker, J. Mol. Biol., 236, 887 (1994). Improved Continuum Electrostatic Modelling in Proteins, with Comparison to Experiment.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 887
-
-
Warwicker, J.1
-
39
-
-
0028859420
-
Conformation and Hydrogen Ion Titration of Proteins: A Continuum Electrostatic Model with Conformational Flexibility
-
T. J. You and D. Bashford, Biophys. J., 69, 1721 (1995). Conformation and Hydrogen Ion Titration of Proteins: A Continuum Electrostatic Model with Conformational Flexibility.
-
(1995)
Biophys. J.
, vol.69
, pp. 1721
-
-
You, T.J.1
Bashford, D.2
-
43
-
-
0030945495
-
Incorporating Protein Conformational Flexibility into the Calculation of pH-dependent Protein Properties
-
E. G. Alexov and M. R. Gunner, Biophys. J., 74, 2075 (1997). Incorporating Protein Conformational Flexibility into the Calculation of pH-dependent Protein Properties.
-
(1997)
Biophys. J.
, vol.74
, pp. 2075
-
-
Alexov, E.G.1
Gunner, M.R.2
-
44
-
-
0000671518
-
a's of Ionizable Residues in Proteins: Semi-microscopic and Microscopic Approaches
-
a's of Ionizable Residues in Proteins: Semi-microscopic and Microscopic Approaches.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 4458
-
-
Sham, Y.Y.1
Chu, Z.T.2
Warshel, A.3
-
45
-
-
0021476470
-
Calculations of Electrostatic Interactions in Biological Systems and in Solutions
-
A. Warshel and S. Russell, Q. Rev. Biophys., 17, 283 (1984). Calculations of Electrostatic Interactions in Biological Systems and in Solutions.
-
(1984)
Q. Rev. Biophys.
, vol.17
, pp. 283
-
-
Warshel, A.1
Russell, S.2
-
46
-
-
0000945505
-
Computing the Ionization States of Proteins with a Detailed Charge Model
-
J. Antosiewicz, J. M. Briggs, A. E. Elcock, M. K. Gilson, and J. A. McCammon, J. Comput. Chem., 17, 1633 (1996). Computing the Ionization States of Proteins with a Detailed Charge Model.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 1633
-
-
Antosiewicz, J.1
Briggs, J.M.2
Elcock, A.E.3
Gilson, M.K.4
McCammon, J.A.5
-
47
-
-
84862582328
-
Computer Simulation of Biomolecular Systems Using Molecular Dynamics and Free Energy Perturbation Methods
-
K. B. Lipkowitz and D. B. Boyd Eds., VCH Publishers, New York
-
T. P. Lybrand, in Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd Eds., VCH Publishers, New York, 1990, Vol. 1, pp. 295-320. Computer Simulation of Biomolecular Systems Using Molecular Dynamics and Free Energy Perturbation Methods.
-
(1990)
Reviews in Computational Chemistry
, vol.1
, pp. 295-320
-
-
Lybrand, T.P.1
-
48
-
-
0019889036
-
a, Proton Transfer Reactions, and General Acid Catalysis Reactions in Enzymes
-
a, Proton Transfer Reactions, and General Acid Catalysis Reactions in Enzymes.
-
(1981)
Biochemistry
, vol.20
, pp. 3167
-
-
Warshel, A.1
-
50
-
-
0009590921
-
Free Energy Calculations: A Breakthrough for Modeling Organic Chemistry in Solution
-
W. L. Jorgensen, Acc. Chem. Res., 22, 184 (1989). Free Energy Calculations: A Breakthrough for Modeling Organic Chemistry in Solution.
-
(1989)
Acc. Chem. Res.
, vol.22
, pp. 184
-
-
Jorgensen, W.L.1
-
52
-
-
33947468892
-
Theory of Protein Titration Curves. I. General Equations for Impenetrable Spheres
-
C. Tanford and J. G. Kirkwood, J. Am. Chem. Soc., 79, 5333 (1957). Theory of Protein Titration Curves. I. General Equations for Impenetrable Spheres.
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 5333
-
-
Tanford, C.1
Kirkwood, J.G.2
-
55
-
-
0343791148
-
Electric Moments of Molecules in Liquids
-
L. Onsager, J. Am. Chem. Soc., 58, 1486 (1936). Electric Moments of Molecules in Liquids.
-
(1936)
J. Am. Chem. Soc.
, vol.58
, pp. 1486
-
-
Onsager, L.1
-
56
-
-
38149010969
-
Refined Derivation, Exact Solutions, and Singular Limits of the Poisson-boltzmann Equation
-
A. J. M. Garrett and L. Poladian, Ann. Phys., 188, 386 (1988). Refined Derivation, Exact Solutions, and Singular Limits of the Poisson-Boltzmann Equation.
-
(1988)
Ann. Phys.
, vol.188
, pp. 386
-
-
Garrett, A.J.M.1
Poladian, L.2
-
57
-
-
0025283002
-
Electrostatic Interactions in Macromolecules. Theory and Applications
-
K. A. Sharp and B. Honig, Annu. Rev. Biophys. Chem., 19, 301 (1990). Electrostatic Interactions in Macromolecules. Theory and Applications.
-
(1990)
Annu. Rev. Biophys. Chem.
, vol.19
, pp. 301
-
-
Sharp, K.A.1
Honig, B.2
-
58
-
-
33751552991
-
Calculating Total Electrostatic Energies with the Nonlinear Poisson-boltzmann Equation
-
K. A. Sharp and B. Honig, J. Phys. Chem., 94, 7684 (1990). Calculating Total Electrostatic Energies with the Nonlinear Poisson-Boltzmann Equation.
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 7684
-
-
Sharp, K.A.1
Honig, B.2
-
59
-
-
0000281387
-
Macromolecular Electrostatic Energy Within the Nonlinear Poisson-boltzmann Equation
-
H.-X. Zhou, J. Chem. Phys., 100, 3152 (1994). Macromolecular Electrostatic Energy Within the Nonlinear Poisson-Boltzmann Equation.
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 3152
-
-
Zhou, H.-X.1
-
60
-
-
0020475509
-
Calculation of the Electric Potential in the Active Site Cleft Due to α-helix Dipoles
-
J. Warwicker and H. C. Watson, J. Mol. Biol., 157, 671 (1982). Calculation of the Electric Potential in the Active Site Cleft Due to α-Helix Dipoles.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 671
-
-
Warwicker, J.1
Watson, H.C.2
-
61
-
-
0022964504
-
Focusing of Electric Fields in the Active Site ot Cu,Zn Superoxide Dismutase
-
I. Klapper, R. Hagstrom, R. Fine, K. Sharp, and B. Honig, Proteins: Struct., Func., Genet., 1, 47 (1986). Focusing of Electric Fields in the Active Site ot Cu,Zn Superoxide Dismutase.
-
(1986)
Proteins: Struct., Func., Genet.
, vol.1
, pp. 47
-
-
Klapper, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
-
62
-
-
84988141840
-
Solving the Finite Difference Linearized Poisson-boltzmann Equation: A Comparison of Relaxation and Conjugate Gradients Methods
-
M. E. Davis and J. A. McCammon, J. Comput. Chem., 10, 386 (1989). Solving the Finite Difference Linearized Poisson-Boltzmann Equation: A Comparison of Relaxation and Conjugate Gradients Methods.
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 386
-
-
Davis, M.E.1
McCammon, J.A.2
-
63
-
-
84986486656
-
A Rapid Finite Difference Algorithm, Utilizing Successive Over-relaxation to Solve the Poisson-boltzmann Equation
-
A. Nicholls and B. Honig, J. Comput. Chem., 12, 435 (1991). A Rapid Finite Difference Algorithm, Utilizing Successive Over-relaxation to Solve the Poisson-Boltzmann Equation.
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 435
-
-
Nicholls, A.1
Honig, B.2
-
64
-
-
0026124585
-
Electrostatics and Diffusion of Molecules in Solution: Simulations with the University of Houston Brownian Dynamics Program
-
M. E. Davis, J. D. Madura, B. A. Luty, and J. A. McCammon, Comput. Phys. Commun., 62, 187 (1991). Electrostatics and Diffusion of Molecules in Solution: Simulations with the University of Houston Brownian Dynamics Program.
-
(1991)
Comput. Phys. Commun.
, vol.62
, pp. 187
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
65
-
-
0029633152
-
Electrostatics and Diffusion of Molecules in Solution: Simulations with the University of Houston Brownian Dynamics Program
-
J. D. Madura, J. M. Briggs, R. C. Wade, M. E. Davis, B. A. Luty, A. Ilin, J. Antosiewicz, M. K. Gilson, B. Bagheri, L. R. Scott, and J. A. McCammon, Comput. Phys. Commun., 91, 57 (1995). Electrostatics and Diffusion of Molecules in Solution: Simulations with the University of Houston Brownian Dynamics Program.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 57
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
67
-
-
0001715782
-
as in a Protein from a Continuum Electrostatic Model: Method and Sensitivity Analysis
-
as in a Protein from a Continuum Electrostatic Model: Method and Sensitivity Analysis.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 1229
-
-
Beroza, P.1
Fredkin, D.R.2
-
68
-
-
0017411710
-
The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures
-
F. C. Bernstein, T. F. Koetzle, G. J. B. Williams, E. F. Meyer, M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi, J. Mol. Biol., 112, 535 (1977). The Protein Data Bank: A Computer-Based Archival File for Macromolecular Structures.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
69
-
-
0024250301
-
Polar Hydrogen Positions in Proteins: Empirical Energy Placement and Neutron Diffraction Comparison
-
A. T. Brünger and M. Karplus, Proteins: Struct., Func., Genet., 4, 148 (1988). Polar Hydrogen Positions in Proteins: Empirical Energy Placement and Neutron Diffraction Comparison.
-
(1988)
Proteins: Struct., Func., Genet.
, vol.4
, pp. 148
-
-
Brünger, A.T.1
Karplus, M.2
-
70
-
-
84986512474
-
CHARMM: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations
-
B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus, J. Comput. Chem., 4, 187 (1982). CHARMM: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations.
-
(1982)
J. Comput. Chem.
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
72
-
-
84988087911
-
Calculating the Electrostatic Potential of Molecules in Solution: Method and Error Assessment
-
M. K. Gilson, K. A. Sharp, and B. Honig, J. Comput. Chem., 9, 327 (1988). Calculating the Electrostatic Potential of Molecules in Solution: Method and Error Assessment.
-
(1988)
J. Comput. Chem.
, vol.9
, pp. 327
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.3
-
73
-
-
32844457567
-
Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models
-
D. Sitkoff, K. A. Sharp, and B. Honig, J. Phys. Chem., 98, 1978 (1994). Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
74
-
-
0016399124
-
Energy Functions for Peptides and Proteins. I. Derivation of a Consistent Force Field Including the Hydrogen Bond from Amide Crystals
-
A. T. Hagler, E. Huler, and S. Lifson, J. Am. Chem. Soc., 96, 5319 (1973). Energy Functions for Peptides and Proteins. I. Derivation of a Consistent Force Field Including the Hydrogen Bond from Amide Crystals.
-
(1973)
J. Am. Chem. Soc.
, vol.96
, pp. 5319
-
-
Hagler, A.T.1
Huler, E.2
Lifson, S.3
-
75
-
-
33645941402
-
The OPLS Potential Function for Proteins. Energy Minimizations for Crystals of Cyclic Peptides and Crambin
-
W. L. Jorgensen and J. Tirado-Rives, J. Am. Chem. Soc., 110, 1657 (1988). The OPLS Potential Function for Proteins. Energy Minimizations for Crystals of Cyclic Peptides and Crambin.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
76
-
-
0029018932
-
A Simple Algorithm for the Calculation of Multiple Site Titration Curves
-
A. Karshikoff, Protein Eng., 8, 243 (1995). A Simple Algorithm for the Calculation of Multiple Site Titration Curves.
-
(1995)
Protein Eng.
, vol.8
, pp. 243
-
-
Karshikoff, A.1
-
77
-
-
0017429069
-
Areas, Volumes, Packing and Protein Structure
-
F. M. Richards, Annu. Rev. Biophys. Bioeng., 6, 151 (1977). Areas, Volumes, Packing and Protein Structure.
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151
-
-
Richards, F.M.1
-
78
-
-
0024802754
-
Electrostatic Interactions in Proteins: Calculations of the Electrostatic Term of Free Energy and the Electrostatic Potential Field
-
A. Karshikov, R. Engh, W. Bode, and B. Atanasov, Eur. Biophys. J., 17, 287 (1989). Electrostatic Interactions in Proteins: Calculations of the Electrostatic Term of Free Energy and the Electrostatic Potential Field.
-
(1989)
Eur. Biophys. J.
, vol.17
, pp. 287
-
-
Karshikov, A.1
Engh, R.2
Bode, W.3
Atanasov, B.4
-
79
-
-
0028851189
-
Electrostatics of Hemoglobins from Measurements of the Electric Dichroism and Computer Simulations
-
J. Antosiewicz and D. Pörschke, Biophys. J., 68, 655 (1995). Electrostatics of Hemoglobins from Measurements of the Electric Dichroism and Computer Simulations.
-
(1995)
Biophys. J.
, vol.68
, pp. 655
-
-
Antosiewicz, J.1
Pörschke, D.2
-
80
-
-
0029100915
-
Computation of the Dipole Moments of Proteins
-
J. Antosiewicz, Biophys. J., 69, 1344 (1995). Computation of the Dipole Moments of Proteins.
-
(1995)
Biophys. J.
, vol.69
, pp. 1344
-
-
Antosiewicz, J.1
-
81
-
-
5744249209
-
Equation of State Calculations by Fast Computing Machines
-
N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, and E. Teller, J. Chem. Phys., 21, 1087 (1953). Equation of State Calculations by Fast Computing Machines.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
82
-
-
0032898499
-
Thermodynamic Linkage between Protonation and Binding of Inhibitors to HIV Protease
-
in press
-
J. Trylska, J. Antosiewicz, M. Geller, C. N. Hodge, R. M. Klabe, M. S. Head, and M. K. Gilson, Protein Sci., 8, in press (1999). Thermodynamic Linkage Between Protonation and Binding of Inhibitors to HIV Protease.
-
(1999)
Protein Sci.
, vol.8
-
-
Trylska, J.1
Antosiewicz, J.2
Geller, M.3
Hodge, C.N.4
Klabe, R.M.5
Head, M.S.6
Gilson, M.K.7
-
83
-
-
0342394897
-
The Dielectric Polarization of Polar Liquids
-
J. G. Kirkwood, J. Chem. Phys., 7, 911 (1939). The Dielectric Polarization of Polar Liquids.
-
(1939)
J. Chem. Phys.
, vol.7
, pp. 911
-
-
Kirkwood, J.G.1
-
84
-
-
0015222647
-
The Interpretation of Protein Structures: Estimation of Static Accessibility
-
B. Lee and F. M. Richards, J. Mol. Biol., 55, 379 (1971). The Interpretation of Protein Structures: Estimation of Static Accessibility.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379
-
-
Lee, B.1
Richards, F.M.2
-
85
-
-
33751391391
-
A Local Dielectric Constant Model for Solvation Free Energies Which Accounts for Solute Polarizability
-
K. Sharp, A. Jean-Charles, and B. Honig, J. Phys. Chem., 96, 3822 (1992). A Local Dielectric Constant Model for Solvation Free Energies Which Accounts for Solute Polarizability.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 3822
-
-
Sharp, K.1
Jean-Charles, A.2
Honig, B.3
-
86
-
-
0030908397
-
a Calculations Along a Bacteriorhodopsin Molecular Dynamics Trajectory
-
a Calculations Along a Bacteriorhodopsin Molecular Dynamics Trajectory.
-
(1997)
Biophys. Chem.
, vol.65
, pp. 189
-
-
Sandberg, L.1
Edholm, O.2
-
87
-
-
0031052519
-
Prediction of Titration Properties of Structures of a Protein Derived from Molecular Dynamics Trajectories
-
S. T. Wlodek, J. Antosiewicz, and J. A. McCammon, Protein Sci., 6, 373 (1997). Prediction of Titration Properties of Structures of a Protein Derived from Molecular Dynamics Trajectories.
-
(1997)
Protein Sci.
, vol.6
, pp. 373
-
-
Wlodek, S.T.1
Antosiewicz, J.2
McCammon, J.A.3
-
88
-
-
0024306320
-
Molecular Dynamics Effects on Protein Electrostatics
-
J. J. Wendoloski and J. B. Matthew, Proteins: Struct., Funct., Genet., 5, 313 (1989). Molecular Dynamics Effects on Protein Electrostatics.
-
(1989)
Proteins: Struct., Funct., Genet.
, vol.5
, pp. 313
-
-
Wendoloski, J.J.1
Matthew, J.B.2
-
89
-
-
0022522422
-
Calculation of Electrostatic Interactions in Proteins
-
J. B. Matthew and F. R. N. Gurd, Methods Enzymol., 130, 413 (1986). Calculation of Electrostatic Interactions in Proteins.
-
(1986)
Methods Enzymol.
, vol.130
, pp. 413
-
-
Matthew, J.B.1
Gurd, F.R.N.2
-
90
-
-
0031577320
-
Calculation of the Dielectric Properties of a Protein and Its Solvent: Theory and a Case Study
-
G. Loeffler, H. Schreiber, and O. Steinhauser, J. Mol. Biol., 270, 520 (1997). Calculation of the Dielectric Properties of a Protein and Its Solvent: Theory and a Case Study.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 520
-
-
Loeffler, G.1
Schreiber, H.2
Steinhauser, O.3
-
91
-
-
0042339945
-
-
unpublished data, University of Houston
-
M. K. Gilson and I. H. Lee, unpublished data, University of Houston, 1995.
-
(1995)
-
-
Gilson, M.K.1
Lee, I.H.2
-
92
-
-
0041838795
-
Time Scales and Fluctuations of Protein Dynamics: Metmyoglobin in Aqueous Solution
-
A. D. Buckingham, Ed., Chapman & Hall, London
-
L. A. Findsen, S. Subramaniam, V. Lounnas, and B. M. Pettitt, in Principles of Molecular Recognition, A. D. Buckingham, Ed., Chapman & Hall, London, 1993, pp. 168-193. Time Scales and Fluctuations of Protein Dynamics: Metmyoglobin in Aqueous Solution.
-
(1993)
Principles of Molecular Recognition
, pp. 168-193
-
-
Findsen, L.A.1
Subramaniam, S.2
Lounnas, V.3
Pettitt, B.M.4
-
93
-
-
5544264558
-
Gaussian Fluctuation Formula for Electrostatic Free-energy Changes in Solution
-
R. M. Levy, M. Belhadj, and D. B. Kitchen, J. Chem. Phys., 95, 3627 (1991). Gaussian Fluctuation Formula for Electrostatic Free-Energy Changes in Solution.
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 3627
-
-
Levy, R.M.1
Belhadj, M.2
Kitchen, D.B.3
-
96
-
-
0006356190
-
Proton NMR Studies of the Aromatic Residues in the Basic Pancreatic Trypsin Inhibitor (BPTI)
-
G. Wagner and K. Wuthrich, J. Mag. Reson., 20, 435 (1975). Proton NMR Studies of the Aromatic Residues in the Basic Pancreatic Trypsin Inhibitor (BPTI).
-
(1975)
J. Mag. Reson.
, vol.20
, pp. 435
-
-
Wagner, G.1
Wuthrich, K.2
-
99
-
-
0028232021
-
Individual Ionization Constants of All the Carboxyl Groups in Ribonuclease HI from Escherichia coli Determined by NMR
-
Y. Oda, T. Yamazaki, K. Nagayama, S. Kanaya, Y. Kuroda, and H. Nakamura, Biochemistry, 33, 5275 (1994). Individual Ionization Constants of All the Carboxyl Groups in Ribonuclease HI from Escherichia coli Determined by NMR.
-
(1994)
Biochemistry
, vol.33
, pp. 5275
-
-
Oda, Y.1
Yamazaki, T.2
Nagayama, K.3
Kanaya, S.4
Kuroda, Y.5
Nakamura, H.6
-
100
-
-
0028951968
-
pH, Ionic Strength and Temperature Dependences of Ionization Equilibria for the Carboxyl Groups in Turkey Ovomucid Third Domain
-
W. Schaller and A. D. Robertson, Biochemistry, 34, 4714 (1995). pH, Ionic Strength and Temperature Dependences of Ionization Equilibria for the Carboxyl Groups in Turkey Ovomucid Third Domain.
-
(1995)
Biochemistry
, vol.34
, pp. 4714
-
-
Schaller, W.1
Robertson, A.D.2
-
101
-
-
0030610243
-
a Measurements from Nuclear Magnetic Resonance for B1 and B2 Immunoglobulin G-binding Domains of Protein G: Comparison with Calculated Values for Nuclear Magnetic Resonance and X-ray Structures
-
a Measurements from Nuclear Magnetic Resonance for B1 and B2 Immunoglobulin G-binding Domains of Protein G: Comparison with Calculated Values for Nuclear Magnetic Resonance and X-Ray Structures.
-
(1997)
Biochemistry
, vol.36
, pp. 3580
-
-
Khare, D.1
Alexander, P.2
Antosiewicz, J.3
Bryan, P.4
Gilson, M.5
Orban, J.6
-
102
-
-
0015915143
-
Nuclear Magnetic Resonance Studies of Trypsin Inhibitors. Histidines of Virgin and Modified Soybean Trypsin Inhibitor (Kunitz)
-
J. L. Markley, Biochemistry, 12, 2245 (1973). Nuclear Magnetic Resonance Studies of Trypsin Inhibitors. Histidines of Virgin and Modified Soybean Trypsin Inhibitor (Kunitz).
-
(1973)
Biochemistry
, vol.12
, pp. 2245
-
-
Markley, J.L.1
-
104
-
-
0001163089
-
Kinetics of Reaction Control and Information Transfer in Enzymes and Nucleic Acids
-
S. Claesson, Ed., Interscience, New York
-
M. Eigen in Nobel Symposium, Vol. 5. Fast Reactions and Primary Processes in Chemical Kinetics, S. Claesson, Ed., Interscience, New York, 1967, pp. 333-369. Kinetics of Reaction Control and Information Transfer in Enzymes and Nucleic Acids.
-
(1967)
Nobel Symposium, Vol. 5. Fast Reactions and Primary Processes in Chemical Kinetics
, vol.5
, pp. 333-369
-
-
Eigen, M.1
-
108
-
-
0022555885
-
Determination and Analysis of Urea and Guanidine Hydrochloride Denaturation Curves
-
C. N. Pace, Methods Enzymol., 131, 266 (1986). Determination and Analysis of Urea and Guanidine Hydrochloride Denaturation Curves.
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266
-
-
Pace, C.N.1
-
109
-
-
0023697408
-
Unfolding Free Energy Changes Determined by the Linear Extrapolation Method. 1. Unfolding of Phenylmethanesulfonyl α-chymotrypsin Using Different Denaturants
-
M. M. Santoro and D. W. Bolen, Biochemistry, 27, 8063 (1988). Unfolding Free Energy Changes Determined by the Linear Extrapolation Method. 1. Unfolding of Phenylmethanesulfonyl α-Chymotrypsin Using Different Denaturants.
-
(1988)
Biochemistry
, vol.27
, pp. 8063
-
-
Santoro, M.M.1
Bolen, D.W.2
-
111
-
-
0028569153
-
Protein Denaturation with Guanidine Hydrochloride or Urea Provides a Different Estimate of Stability Depending on the Contributions of Electrostatic Interactions
-
O. D. Monera, C. M. Kay, and R. S. Hodges, Protein Sci., 3, 1984 (1994). Protein Denaturation with Guanidine Hydrochloride or Urea Provides a Different Estimate of Stability Depending on the Contributions of Electrostatic Interactions.
-
(1994)
Protein Sci.
, vol.3
, pp. 1984
-
-
Monera, O.D.1
Kay, C.M.2
Hodges, R.S.3
-
112
-
-
0014718113
-
Protein Denaturation. Part C. Theoretical Models for the Mechanism of Denaturation
-
C. Tanford, Adv. Protein Chem., 24, 1 (1970). Protein Denaturation. Part C. Theoretical Models for the Mechanism of Denaturation.
-
(1970)
Adv. Protein Chem.
, vol.24
, pp. 1
-
-
Tanford, C.1
-
113
-
-
0020855355
-
Hydrogen Exchange and Structural Dynamics of Proteins and Nucleic Acids
-
S. W. Englander and N. R. Kallenbach, Q. Rev. Biophys., 4, 521 (1984). Hydrogen Exchange and Structural Dynamics of Proteins and Nucleic Acids.
-
(1984)
Q. Rev. Biophys.
, vol.4
, pp. 521
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
114
-
-
0022555891
-
Protein Conformational Dynamics Measured by Hydrogen Isotope Exchange Techniques
-
R. B. Gregory and A. Rosenberg, Methods Enzymol., 131, 448 (1986). Protein Conformational Dynamics Measured by Hydrogen Isotope Exchange Techniques.
-
(1986)
Methods Enzymol.
, vol.131
, pp. 448
-
-
Gregory, R.B.1
Rosenberg, A.2
-
115
-
-
0030047378
-
Temperature and pH Dependence of Hydrogen Exchange and Global Stability for Ovomucid Third Domain
-
L. Swint-Kruse and A. D. Robertson, Biochemistry, 35, 171 (1996). Temperature and pH Dependence of Hydrogen Exchange and Global Stability for Ovomucid Third Domain.
-
(1996)
Biochemistry
, vol.35
, pp. 171
-
-
Swint-Kruse, L.1
Robertson, A.D.2
-
116
-
-
0030028771
-
Salt Effects on the Amide Hydrogen Exchange of Bovine Pancreatic Trypsin Inhibitor
-
M. Christoffersen, S. Bolvig, and E. Tuchsen, Biochemistry, 35, 2309 (1996). Salt Effects on the Amide Hydrogen Exchange of Bovine Pancreatic Trypsin Inhibitor.
-
(1996)
Biochemistry
, vol.35
, pp. 2309
-
-
Christoffersen, M.1
Bolvig, S.2
Tuchsen, E.3
-
117
-
-
0023645482
-
Electrostatic Effects and Hydrogen Exchange Behaviour in Proteins. the pH Dependence of Exchange Rates in Lysozyme
-
M. Delepierre, C. M. Dobson, M. Karplus, F. M. Poulsen, D. J. States, and R. E. Wedin, J. Mol. Biol., 197, 111 (1987). Electrostatic Effects and Hydrogen Exchange Behaviour in Proteins. The pH Dependence of Exchange Rates in Lysozyme.
-
(1987)
J. Mol. Biol.
, vol.197
, pp. 111
-
-
Delepierre, M.1
Dobson, C.M.2
Karplus, M.3
Poulsen, F.M.4
States, D.J.5
Wedin, R.E.6
-
118
-
-
0019076960
-
Hydrogen Isotope Exchange Kinetics of Single Protons in Bovine Pancreatic Trypsin Inhibitor
-
C. K. Woodward and B. D. Hilton, Biophys. J., 32, 561 (1980). Hydrogen Isotope Exchange Kinetics of Single Protons in Bovine Pancreatic Trypsin Inhibitor.
-
(1980)
Biophys. J.
, vol.32
, pp. 561
-
-
Woodward, C.K.1
Hilton, B.D.2
-
121
-
-
33947480381
-
Electric Properties of Macromolecules. IV. Determination of Electric and Optical Parameters from Saturation of Electric Birefringence in Solutions
-
C. O'Konsky, K. Yoshioka, and W. H. Orttung, J. Phys. Chem., 63, 1558 (1959). Electric Properties of Macromolecules. IV. Determination of Electric and Optical Parameters from Saturation of Electric Birefringence in Solutions.
-
(1959)
J. Phys. Chem.
, vol.63
, pp. 1558
-
-
O'Konsky, C.1
Yoshioka, K.2
Orttung, W.H.3
-
123
-
-
0023442745
-
Electric, Optical and Hydrodynamic Parameters of Lac Repressor from Measurements of the Electrical Dichroism. High Permanent Dipole Moment Associated with the Protein
-
D. Pörschke, Biophys. Chem., 28, 137 (1987). Electric, Optical and Hydrodynamic Parameters of Lac Repressor from Measurements of the Electrical Dichroism. High Permanent Dipole Moment Associated with the Protein.
-
(1987)
Biophys. Chem.
, vol.28
, pp. 137
-
-
Pörschke, D.1
-
124
-
-
0024298837
-
Structure of Tet Repressor and Tet Repressor-operator Complexes in Solution from Electrooptical Measurements and Hydrodynamic Simulations
-
D. Pörschke, K. Tovar, and J. Antosiewicz, Biochemistry, 27, 4674 (1988). Structure of Tet Repressor and Tet Repressor-Operator Complexes in Solution from Electrooptical Measurements and Hydrodynamic Simulations.
-
(1988)
Biochemistry
, vol.27
, pp. 4674
-
-
Pörschke, D.1
Tovar, K.2
Antosiewicz, J.3
-
125
-
-
0025911729
-
Persistence Length and Bending Dynamics of DNA from Electrooptical Measurements at High Salt Concentrations
-
D. Pörschke, Biophys. Chem., 40, 169 (1991). Persistence Length and Bending Dynamics of DNA from Electrooptical Measurements at High Salt Concentrations.
-
(1991)
Biophys. Chem.
, vol.40
, pp. 169
-
-
Pörschke, D.1
-
126
-
-
0029863182
-
Electrooptical Measurements Demonstrate a Large Permanent Dipole Moment Associated with Acetylcholinesterase
-
D. Porschke, C. Creminon, X. Cousin, C. Bon, J. Sussman, and I. Silman, Biophys. J., 70, 1603 (1996). Electrooptical Measurements Demonstrate a Large Permanent Dipole Moment Associated with Acetylcholinesterase.
-
(1996)
Biophys. J.
, vol.70
, pp. 1603
-
-
Porschke, D.1
Creminon, C.2
Cousin, X.3
Bon, C.4
Sussman, J.5
Silman, I.6
-
127
-
-
0021870990
-
The Conformation of Single Stranded Oligonucleotides and of Oligonucleotide-oligopeptide Complexes from Their Rotation Relaxation in the Nanosecond Time Range
-
D. Porschke and M. Jung, J. Biomol. Struct. Dynam., 2, 1173 (1985). The Conformation of Single Stranded Oligonucleotides and of Oligonucleotide-Oligopeptide Complexes from Their Rotation Relaxation in the Nanosecond Time Range.
-
(1985)
J. Biomol. Struct. Dynam.
, vol.2
, pp. 1173
-
-
Porschke, D.1
Jung, M.2
-
128
-
-
0009669405
-
Electrical Birefringence at High Fields
-
D. N. Holcomb and I. Tinoco, Jr., J. Chem. Phys., 67, 2691 (1963). Electrical Birefringence at High Fields.
-
(1963)
J. Chem. Phys.
, vol.67
, pp. 2691
-
-
Holcomb, D.N.1
Tinoco I., Jr.2
-
129
-
-
0020130381
-
Electric Properties and Structure of DNA Restriction Fragments from Measurements of the Electric Dichroism
-
S. Diekmann, W. Hillen, M. Jung, R. D. Wells, and D. Porschke, Biophys. Chem., 15, 157 (1982). Electric Properties and Structure of DNA Restriction Fragments from Measurements of the Electric Dichroism.
-
(1982)
Biophys. Chem.
, vol.15
, pp. 157
-
-
Diekmann, S.1
Hillen, W.2
Jung, M.3
Wells, R.D.4
Porschke, D.5
-
130
-
-
0023953148
-
Turn of Promotor DNA by cAMP Receptor Protein Characterized by Bead Model Simulation of Rotational Diffusion
-
J. Antosiewicz and D. Pörschke, J. Biomol. Struct. Dynam., 5, 819 (1988). Turn of Promotor DNA by cAMP Receptor Protein Characterized by Bead Model Simulation of Rotational Diffusion.
-
(1988)
J. Biomol. Struct. Dynam.
, vol.5
, pp. 819
-
-
Antosiewicz, J.1
Pörschke, D.2
-
131
-
-
0028361968
-
Structural Origins of pH and Ionic Strength Effects on Protein Stability. Acid Denaturation of Sperm Whale Apomyoglobin
-
A.-S. Yang and B. Honig, J. Mol. Biol., 237, 602 (1994). Structural Origins of pH and Ionic Strength Effects on Protein Stability. Acid Denaturation of Sperm Whale Apomyoglobin.
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 602
-
-
Yang, A.-S.1
Honig, B.2
-
133
-
-
0026602704
-
Urea Denaturation of Barnase: PH Dependence and Characterization of the Unfolded State
-
C. N. Pace, D. V. Laurents, and R. E. Erickson, Biochemistry, 31, 2728 (1992). Urea Denaturation of Barnase: pH Dependence and Characterization of the Unfolded State.
-
(1992)
Biochemistry
, vol.31
, pp. 2728
-
-
Pace, C.N.1
Laurents, D.V.2
Erickson, R.E.3
-
134
-
-
0042840900
-
Modeling Protonation Equilibria in Biomolecules
-
W. F. van Gunsteren, P. K. Weiner, and A. J. Wilkinson, Eds., Kluwer/ Escom Academic Publishers, Boston
-
M. K. Gilson, in Computer Simulations of Biomolecular Systems: Theoretical and Experimental Applications, W. F. van Gunsteren, P. K. Weiner, and A. J. Wilkinson, Eds., Kluwer/ Escom Academic Publishers, Boston, 1997, Vol. 3, pp. 199-222. Modeling Protonation Equilibria in Biomolecules.
-
(1997)
Computer Simulations of Biomolecular Systems: Theoretical and Experimental Applications
, vol.3
, pp. 199-222
-
-
Gilson, M.K.1
-
136
-
-
0023477907
-
Human Immunodeficiency Virus Protease Expressed in Escherichia coli Exhibits Autoprocessing and Specific Maturation of the Gag Precursor
-
C. Debouck, J. Gorniak, J. Strickler, T. Meek, B. Metcalf, and M. Rosenberg, Proc. Natl. Acad. Sci. U.S.A., 84, 8903 (1987). Human Immunodeficiency Virus Protease Expressed in Escherichia coli Exhibits Autoprocessing and Specific Maturation of the Gag Precursor.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 8903
-
-
Debouck, C.1
Gorniak, J.2
Strickler, J.3
Meek, T.4
Metcalf, B.5
Rosenberg, M.6
-
137
-
-
0024412506
-
Conserved Folding in Retroviral Protease: Crystal Structure of a Synthetic HIV-1 Protease
-
A. Wlodawer, M. Miller, M. Jaskolski, B. K. Sathyanarayana, E. Baldwin, I. T. Weber, L. M. Selk, L. Clawson, J. Schneider, and S. B. H. Kent, Science, 245, 616 (1989). Conserved Folding in Retroviral Protease: Crystal Structure of a Synthetic HIV-1 Protease.
-
(1989)
Science
, vol.245
, pp. 616
-
-
Wlodawer, A.1
Miller, M.2
Jaskolski, M.3
Sathyanarayana, B.K.4
Baldwin, E.5
Weber, I.T.6
Selk, L.M.7
Clawson, L.8
Schneider, J.9
Kent, S.B.H.10
-
138
-
-
0026005186
-
Human Immunodeficiency Virus-1 Protease. 2. Use of pH Rate Studies and Solvent Kinetic Isotope Effects to Elucidate Details of Chemical Mechanism
-
L. J. Hyland, T. A. Tomaszek, Jr., and T. D. Meek, Biochemistry, 30, 8454 (1991). Human Immunodeficiency Virus-1 Protease. 2. Use of pH Rate Studies and Solvent Kinetic Isotope Effects to Elucidate Details of Chemical Mechanism.
-
(1991)
Biochemistry
, vol.30
, pp. 8454
-
-
Hyland, L.J.1
Tomaszek T.A., Jr.2
Meek, T.D.3
-
139
-
-
0026325601
-
Kinetic Studies of Human Immunodeficiency Virus Type 1 Protease and Its Active-site Hydrogen Bond Mutant A28S
-
E. Ido H. P. Han, F. J. Kezdy, and J. Tang, J. Biol. Chem., 266, 24349 (1991). Kinetic Studies of Human Immunodeficiency Virus Type 1 Protease and Its Active-Site Hydrogen Bond Mutant A28S.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 24349
-
-
Ido, E.1
Han, H.P.2
Kezdy, F.J.3
Tang, J.4
-
140
-
-
0028114966
-
NMR and X-ray Evidence that the HIV Protease Catalytic Aspartyl Groups Are Protonated in the Complex Formed by the Protease and a Nonpeptide Cyclic Urea-based Inhibitor
-
T. Yamazaki, L. K. Nicholson, D. A. Torchia, P. Wingfield, S. J. Stahl, J. D. Kaufman, C. J. Eyermann, C. N. Hodge, P. Y. S. Lam, Y. Ru, P. K. Jadhav, C.-H. Chang, and P. C. Weber, J. Am. Chem. Soc., 116, 10791 (1994). NMR and X-Ray Evidence that the HIV Protease Catalytic Aspartyl Groups Are Protonated in the Complex Formed by the Protease and a Nonpeptide Cyclic Urea-Based Inhibitor.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 10791
-
-
Yamazaki, T.1
Nicholson, L.K.2
Torchia, D.A.3
Wingfield, P.4
Stahl, S.J.5
Kaufman, J.D.6
Eyermann, C.J.7
Hodge, C.N.8
Lam, P.Y.S.9
Ru, Y.10
Jadhav, P.K.11
Chang, C.-H.12
Weber, P.C.13
-
141
-
-
0000253154
-
Dielectric Dispersion and Dipole Moment of Myoglobin in Water
-
G. P. South and E. H. Grant, Proc. R. Soc. London A, 328, 371 (1972). Dielectric Dispersion and Dipole Moment of Myoglobin in Water.
-
(1972)
Proc. R. Soc. London A
, vol.328
, pp. 371
-
-
South, G.P.1
Grant, E.H.2
-
142
-
-
0014635135
-
Dielectric Properties of Hemoglobin and Myoglobin. II. Dipole Moment of Sperm Whale Myoglobin
-
P. Schlecht, Biopolymers, 8, 757 (1969). Dielectric Properties of Hemoglobin and Myoglobin. II. Dipole Moment of Sperm Whale Myoglobin.
-
(1969)
Biopolymers
, vol.8
, pp. 757
-
-
Schlecht, P.1
-
143
-
-
0001006091
-
Coordinate Systems for Modeling the Hydrodynamic Resistance and Diffusion Coefficients of Irregularly Shaped Rigid Macromolecules
-
S. C. Harvey and J. Garcia de la Torre, Macromolecules, 13, 960 (1980). Coordinate Systems for Modeling the Hydrodynamic Resistance and Diffusion Coefficients of Irregularly Shaped Rigid Macromolecules.
-
(1980)
Macromolecules
, vol.13
, pp. 960
-
-
Harvey, S.C.1
De La Garcia Torre, J.2
-
144
-
-
0001550609
-
Transient Electric Birefringence of Dilute Rigid-body Suspensions at Low Field Strengths
-
W. A. Wegener, J. Chem. Phys., 84, 5989 (1986). Transient Electric Birefringence of Dilute Rigid-Body Suspensions at Low Field Strengths.
-
(1986)
J. Chem. Phys.
, vol.84
, pp. 5989
-
-
Wegener, W.A.1
-
145
-
-
0011257308
-
Brownian Dynamics Simulations of Electrooptical Transients for Solutions of Rigid Macromolecules
-
J. Antosiewicz, T. Grycuk, and D. Pörschke, J. Chem. Phys., 95, 1354 (1991). Brownian Dynamics Simulations of Electrooptical Transients for Solutions of Rigid Macromolecules.
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 1354
-
-
Antosiewicz, J.1
Grycuk, T.2
Pörschke, D.3
|