New method for automatic identification and typing of single and multiple superimposed human papillomavirus sequences

Diagnostic Molecular Pathology

Volumn 8, Issue 4, 1999, Pages 216-221

  Feoli Fonseca, Juan Carlos ^a   Oligny, Luc L ^a   Yotov, Wagner V ^a,b  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b UNIVERSITY OF MONTREAL   (Canada)

Author keywords

Coinfection; Database; Degenerated sequence; GP5; HPV; HPV typing; Human papillomaviruses; PCR DS; Polymerase chain reaction; Sequencing; Superimposed sequence

Indexed keywords

ARTICLE; AUTOANALYSIS; DATA ANALYSIS; DATA BASE; GENE SEQUENCE; GENOTYPE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; VIRUS CHARACTERIZATION; VIRUS GENE; WART VIRUS;

EID: 0033405966     PISSN: 10529551     EISSN: None     Source Type: Journal    
DOI: 10.1097/00019606-199912000-00008     Document Type: Article

References (18)

1. Bauer HM, Greer CE, Manos MM. Determination of genital human papillomavirus infection by consensus PCR amplification. In: Herrington CS, McGee JO, eds. Diagnostic molecular pathology. A practical approach. Volume II. Cell and tissue genotyping. Oxford: IRL Press at Oxford University Press, 1992:131-52.
2. Bosch FX, Manos MM, Munoz N, et al. Prevalence of human papillomavirus in cervical cancer: a worldwide perspective. International biological study on cervical cancer (IBSCC) Study Group. J Natl Cancer Inst 1995;87:796-802.
3. Cox JT. HPV DNA testing: clinical boon or boondoggle? Lancet 1995;346:717-9.
4. de Roda H, Walboomers JM, van den Brule AJ, et al. The use of general primers GP5 and GP6 elongated at their 3' ends with adjacent highly conserved sequences improves human papillomavirus detection by PCR. J Gen Virol 1995;76:1057-62.
5. Feoli-Fonseca JC, Oligny LL, Filion M, et al. Direct human papillomavirus (HPV) sequencing method yields a novel HPV in a human immunodeficiency virus-positive quebec woman and distinguishes a new HPV clade [In Process Citation]. J Infect Dis 1998;178:1492-6.
6. Feoli-Fonseca JC, Oligny LL, Filion M, et al. A two-tier polymerase chain reaction direct sequencing method for detecting and typing human papillomaviruses in pathological specimens. Diagn Mol Pathol 1998;7:317-23.
7. Feoli-Fonseca JC, Oligny LL, Filion M, et al. JC9813-A Putative Novel Human Papillomavirus Identified by PCR-DS. Biochem Biophys Res Commun 1998;250:63-7.
8. Human Papillomaviruses: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences (human papillomaviruses compendium). Los Alamos National Laboratory. URL: http://hpv-web.lanl.gov/
9. Jacobs MV, de Roda H, van den Brule AJ, et al. Group-specific differentiation between high-and low-risk human papillomavirus genotypes by general primer-mediated PCR and two cocktails of oligonucleotide probes. J Clin Microbiol 1995;33:901-5.
10. Jacobs MV, Snijders PJ, van den Brule AJ, et al. A general primer GP5+/GP6(+)-mediated PCR-enzyme immunoassay method for rapid detection of 14 high-risk and 6 low-risk human papillomavirus genotypes in cervical scrapings. J Clin Microbiol 1997;35: 791-5.
11. Johnson K. Periodic health examination, 1995 update: 1. Screening for human papillomavirus infection in asymptomatic women. Canadian Task Force on the Periodic Health Examination. CMAJ 1995;152:483-93.
12. Kaufman RH, Adam E, Icenogle J, et al. Relevance of human papillomavirus screening in management of cervical intraepithelial neoplasia. Am J Obstet Gynecol 1997; 176:87-92.
13. Lorincz AT. Hybrid Capture method for detection of human papillomavirus DNA in clinical specimens: a tool for clinical management of equivocal Pap smears and for population screening. J Obstet Gynaecol Res 1996;22:629-36.
14. Lorincz AT, Temple GF, Kurman RJ, et al. Oncogenic association of specific human papillomavirus types with cervical neoplasia. J Natl Cancer Inst 1987;79:671-7.
15. Nuovo GJ, Darfler M, Impraim C, Bromley S. Occurrence of multiple types of human papillomavirus in genital tract lesions. Analysis by in situ hybridization and the polymerase chain reaction. Am J Pathol 1991;138:53-8.
16. Qu W, Jiang G, Cruz Y, et al. PCR detection of human papillomavirus: comparison between MY09/MY11 and GP5+/GP6+ primer systems. J Clin Microbiol 1997;35:1304-10.
17. Walker F, Darai E, Dauge-Geffroy MC, et al. Infection genitale a papilloma virus humain (PVH): depistage et typage viral, interet de l'hybridation in situ. Ann Pathol 1996;16:364-73.
18. zur Hausen H. Papillomavirus infections - a major cause of human cancers. Biochim Biophys Acta 1996;1288:F55-78.