Heterogeneous nuclear RNA-ribonucleoprotein F binds to DNA via an oligo(dG)-motif and is associated with RNA polymerase II

Genes to Cells

Volumn 4, Issue 12, 1999, Pages 707-719

  Yoshida, Tatsushi ^a,d   Kokura, Kenji ^a   Makino, Yasutaka ^a   Ossipow, Vincent ^b   Tamura, Taka Aki ^a,c  

^a CHIBA UNIVERSITY   (Japan)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d KYOTO PREFECTURAL UNIVERSITY OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HOLOENZYME; MESSENGER RNA PRECURSOR; NUCLEAR RNA; OLIGONUCLEOTIDE; RECOMBINANT PROTEIN; RIBONUCLEOPROTEIN; RNA POLYMERASE II; SINGLE STRANDED DNA;

ARTICLE; CONTROLLED STUDY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; RAT; RNA SPLICING; TRANSCRIPTION INITIATION;

EID: 0033381830     PISSN: 13569597     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2443.1999.00295.x     Document Type: Article

References (46)

1. Bandziulis, R.J., Swanson, M.S. & Dreyfuss, G. (1989) RNA-binding proteins as developmental regulators. Genes Dev. 3, 431-437.
2. Bennett, M., Pi-ol-Roma, S., Staknis, D., Dreyfuss, G. & Reed, R. (1992) Differential binding of heterogeneous nuclear ribonucleoproteins to mRNA precursors prior to spliceosome assembly in vitro. Mol. Cell. Biol. 12, 3165-3175.
3. Burd, C.G. & Dreyfuss, G. (1994) Conserved structures and diversity of functions of RNA-binding proteins. Science 265, 615-621.
4. Burd, C.G., Swanson, M.S., Gorlach, M. & Dreyfuss, G. (1989) Primary structure of the heterogeneous nuclear ribonucleoprotein A2, B1, and C2 proteins: a diversity of RNA binding proteins is generated by small peptide inserts. Proc. Natl. Acad. Sci. USA 24, 9788-9792.
5. Choi, Y.D., Grabowski, P.J., Shrp, P.A. & Dreyfuss, G. (1986) Heterogeneous nuclear ribonucleoproteins: role in RNA splicing. Science 231, 1534-1539.
6. Conaway, R.C. & Conaway, J.W. (1993) General initiation factors for RNA polymerase II. Annu. Rev. Biochem. 62, 161-190.
7. Dantonel, J.-C., Murthy, K., Manley, J.L. & Tora, L. (1997) Transcription factor TFIID recruits factor CPSF for formation of 3′ end of mRNA. Nature 389, 399-402.
8. Dempsey, L.A., Hanakahi, L.A. & Maizels, N. (1998) A specific isoform of hnRNP D interacts with DNA in the LR1 heterodimer: canonical RNA binding motifs in a sequence-specific duplex DNA binding protein. J. Biol. Chem. 273, 29224-29229.
9. Dreyfuss, G. (1986) Structure and function of nuclear and cytoplasmic ribonucleoprotein particles. Annu. Rev. Cell Biol. 2, 459-498.
10. Dreyfuss, G., Matunis, M.J., Piñol-Roma, S. & Burd, C.G. (1993) HnRNP proteins and the biogenesis of mRNA. Annu. Rev. Cell Biol. 62, 289-321.
11. Du, L. & Warren, S.L. (1997) A functional interaction between the carboxy-terminal domain of RNA polymerase II and pre-mRNA splicing. J. Cell Biol. 136, 5-18.
12. Dynan, W.S. & Tjian, R. (1983) The promoter-specific transcription factor Sp1 bind to upstream sequences in the SV40 early promoter. Cell 35, 79-87.
13. Gamberi, C., Izaurralde, E., Beisel, C. & Mattaj, I.W. (1997) Interaction between the human nuclear cap-binding protein complex and hnRNP F. Mol. Cell. Biol. 17, 2587-2597.
14. Gattoni, R., Mahe, D., Mahl, P., et al. (1996) The human hnRNP-M proteins: structure and relation with early heat shock-induced splicing arrest and chromosome mapping. Nucl. Acids Res. 24, 2535-2542.
15. Ghetti, A., Piñol-Roma, S., Michael, W.M., Morandi, C. & Dreyfuss, G. (1992) HnRNP I, the polypyrimidfine tract-binding protein: distinct nuclear localization and association with hnRNAs. Nucl. Acids Res. 20, 3671-3678.
16. Gidoni, D., Dynan, W.S. & Tjian, R. (1984) Multiple specific contacts between a mammalian transcription factor and its cognate promoters. Nature 312, 409-413.
17. Ishikawa, F., Matunis, M.J., Dreyfuss, G. & Cech, T.R. (1993) Nuclear proteins that bind the pre-mRNA 3′ splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol. Cell. Biol. 13, 4301-4310.
18. Jansen-Durr, P., Boshart, M., Lupp, B., Bosserhoff, A., Frank, R.W. & Schutz, G. (1992) The rat poly pyrimidine tract binding protein (PTB) interacts with a single-stranded DNA motif in a liver-specific enhancer. Nucl. Acids Res. 20, 1243-1249.
19. Kanemaki, M., Makino, Y, Yoshida, T., et al. (1997) Molecular cloning of a rat 49-kDa TBP-interacting protein (TIP49) that is highly homologous to the bacterial RuvB. Biochem. Biophys. Res. Commun. 235, 64-68.
20. Kim, E., Du, L., Bregman, D.B. & Warren, S.W. (1997) Splicing factors associate with hyperphosphorylated RNA polymerase II in the absence of pre-mRNA. J. Cell Biol. 136, 19-28.
21. Ladomery, M. (1997) Multifunctional proteins suggest connections between transcriptional and post-transcriptional processes. Bioessays 19, 903-909.
22. Lee, M.-H., Mori, S. & Raychaudhuri, P. (1996) Transactivation by the hnRNP K protein involves an increase in RNA synthesis from the reporter genes. J. Biol. Chem. 271, 3420-3427.
23. Lichtsteiner, S., Wuarin, J. & Schibler, U. (1987) The interplay of DNA-binding proteins on the promoter of the mouse albumin gene. Cell 51, 963-973.
24. Makino, Y, Mimori, T, Koike, C., et al. (1998) TIP49, homologous to the bacterial DNA helicase RuvB, acts as an autoantigen in human. Biochem. Biophys. Res. Commun. 245, 819-823.
25. Matunis, M.J., Xing, J. & Dreyfuss, G. (1994) The hnRNPF protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucl. Acids Res. 22, 1059-1067.
26. McCracken, S., Fong, N., Yankulov, K., et al. (1997) The C-terminal domaion of RNA polymerase II couples mRNA processing to transcription. Nature 385, 357-361.
27. Mckay, S.J. & Cooke, H. (1992) HnRNP A2/B1 binds specifically to single stranded vertebrate telomeric repeat TTAGGGn. Nucl. Acids Res. 20, 6461-6464.
28. Michelotti, E.F., Michelotti, G.A., Aronsohn, A.I. & Levens, D. (1996) Heterogeneous nuclear ribonucleoprotein K is a transcription factor. Mol. Cell. Biol. 16, 2350-2360.
29. Min, H., Chan, R.C. & Black, D.L. (1995) The generally expressed hnRNP F is involved in a neural-specific pre-mRNA splicing event. Genes Dev. 9, 2659-2671.
30. Moncollin, V., Lauriault, P., Dubois, M.-F., Lavoie, S., Bensaude, O. & Chabot, B. (1996) The nuclear matrix protein p255 is a highly phosphorylated form of RNA polymerase II largest subunit which associates with spliceosomes. Nucl. Acids Res. 24, 4649-4652.
31. Mortillaro, M.J., Blencowe, B.J., Wei, X., et al. (1996) A hyperphosphorylated form of the large subunit of RNA polymarase II is associated with splicing complexes and the nuclear matrix. Proc. Natl. Acad. Sci. USA 93, 8253-8257.
32. Nagai, K., Oubridge, C., Ito, N., Avis, J. & Evans, P (1995) The RNP domain: a sequence-specific RNA-binding domain involved in processing and transport of RNA. Trends Biochem. Sci. 20, 235-240.
33. Neugebauer, K.M. & Roth, M.B. (1997) Transcription units as RNA processing units. Genes Dev. 11, 3279-3285.
34. Ossipow, V., Tassan, J.-P, Nigg, E.A. & Schibler, U. (1995) A mammalian RNA polymerase II holoenzyme containing all components required for promoter-specific transcription initiation. Cell 83, 137-146.
35. Piñol-Roma, S., Choi, Y.D., Matunis, M.J. & Dreyfuss, G. (1988) Immunopurification of heterogeneous nuclear ribonucleoprotein particles reveals an assortment of RNA-binding proteins. Genes Dev. 2, 215-227.
36. Reines, D., Conaway, J.W. & Conaway, R.C. (1996) The RNA polymerase II general elongation factors. Trends Biochem. Sci. 21, 351-355.
37. Roeder, R.G. (1996) The role of general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335.
38. Sierakowska, H., Szea, W., Furdon, P.J. & Kole, R. (1986) Antibodies to hnRNP core proteins inhibit in vitro splicing of human globin pre-mRNA. Nucl. Acids Res. 14, 5241-5254.
39. Steinmetz, E.J. (1997) Pre-mRNA processing and the CTD of RNA polymerase II: The tail that wags the dog? Cell 89, 491-494.
40. Swanson, M.S. & Dreyfuss, G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol. Cell. Biol. 8, 2237-2241.
41. Takimoto, M., Tomonaga, T., Matunis, M., et al. (1993) Specific binding of heterogeneous ribonucleoprotein particle protein K to the human c-myc promoter, in vitro. J. Biol. Chem. 268, 18249-18258.
42. Tassan, J.P., Schulz, S.J., Bartek, J. & Nigg, E.A. (1994) Cell cycle analysis of the activity, subcellular localization, and subunit composition of human CAK (CDK-activation kinase). J. Cell Biol. 127, 467-478.
43. Tomonaga, T. & Levens, D. (1995) Heterogeneous nuclear ribonucleoprotein K is a DNA-binding transactivator. J. Biol. Chem. 270, 4875-4881.
44. Tomonaga, T. & Levens, D. (1996) Activating transcription from single stranded DNA. Proc. Natl. Acad. Sci. USA 93, 5830-5835.
45. Yoshida, T., Makino, Y. & Tamura, T. (1999) Association of the rat heterogeneous nuclear RNA-ribonucleoprotein F with TATA-binding protein. FEBS Lett. 457, 251-254.
46. Yuryev, A., Patturajan, M., Litingtung, Y., et al. (1996) The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins. Proc. Natl. Acad. Sci. USA 93, 6975-6980.