Structures of the complexes of peanut lectin with methyl-β-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins

Acta Crystallographica Section D: Biological Crystallography

Volumn 55, Issue 8, 1999, Pages 1375-1382

  Ravishankar, R ^a   Suguna, K ^a   Surolia, A ^a   Vijayan, M ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOSUGAR; CARBOHYDRATE; METHYLGALACTOSIDE; N ACETYLLACTOSAMINE; N-ACETYLLACTOSAMINE; PEANUT AGGLUTININ; WATER;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; MACROMOLECULE; PROTEIN CONFORMATION; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

AMINO SUGARS; BINDING SITES; CARBOHYDRATES; CRYSTALLOGRAPHY, X-RAY; MACROMOLECULAR SUBSTANCES; METHYLGALACTOSIDES; MODELS, MOLECULAR; PEANUT AGGLUTININ; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; WATER;

EID: 0033180444     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444999006587     Document Type: Article

References (65)

1. Banerjee, R., Das, K., Ravishankar, R., Suguna, K., Surolia, A. & Vijayan, M. (1996). J. Mol. Biol. 259, 281-296.
2. Banerjee, R., Mande, S. C., Ganesh, V., Das, K., Dhanaraj, V., Mahanta, S. K., Suguna, K., Surolia, A. & Vijayan, M. (1994). Proc. Natl Acad. Sci. USA, 91, 227-231.
3. Becker, J. W., Reeke, G. N., Wang, J. L., Cunningham, B. A. & Edelman, G. M. (1975). J. Biol. Chem. 250, 1513-1524.
4. Bhat, T.N. & Cohen, G.N. (1984) J. Appl. Cryst. 17, 244-248.
5. Biosym Technologies (1993). InsightII User Guide. Biosym Technologies, San Diego, CA, USA.
6. Bourne, Y., Abergel, C., Cambillau, C., Frey, M., Rouge, P. & Fontecilla-Camps, J.-C. (1990). J. Mol. Biol. 214, 571-584.
7. Bourne, Y., Mazurier, J., Legrand, D., Rouge, P., Montreuil, J., Spik, G. & Cambillau, C. (1994). Structure, 2, 209-219.
8. Bourne, Y., Rouge, P. & Cambillau, C. (1990). J. Biol. Chem. 265, 18161-18165.
9. Bourne, Y., Rouge, P. & Cambillau, C. (1992). J. Biol. Chem. 267, 197-203.
10. Bourne, Y., Roussel, A., Frey, M., Rouge, P., Fontecilla-Camps, J-C. & Cambillau, C. (1990). Proteins Struct. Funct. Genet. 8, 365-376.
11. Brünger, A. T. (1992). X-PLOR Version 3.1. A System for X-ray Crystallography and NMR. Yale University, Connecticut, USA.
12. Chrispeels, M.J. & Raikhel, N.V. (1991). Plant Cell, 3, 1-9.
13. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
14. De Boeck, H., Lis, H., van Tilbeurgh, H., Sharon, N. & Loontiens, F. G.(1984). J. Biol. Chem. 259, 7067-7074.
15. Delbaere, L. T. J., Vandonselaar, M., Prasad, L., Quail, J. W., Pearlstone, J. W., Carpenter, M. R., Smillie, L. B., Nikrad, P. V., Spohr, U. & Lemieux, R. U. (1990). Can. J. Chem. 68, 116-121.
16. Delbaere, L. T. J., Vandonselaar, M., Prasad, L., Quail, J. W., Wilson, K. S. & Dauter, Z. (1993). J. Mol. Biol. 230, 950-965.
17. Dessen, A., Gupta, D., Sabesan, S., Brewer, C. F. & Sacchettini, J. C. (1995). Biochemistry, 34, 4933-4942.
18. Drickamer, K. (1997). Structure, 5, 465-468.
19. Einspahr, H., Parks, E. H., Suguna, K., Subramanian, E. & Suddath, F. L. (1986). J. Biol. Chem. 261, 16518-16527.
20. Elgavish, S. & Shaanan, B. (1997). Trends Biochem. Sci. 12, 462-467.
21. Elgavish, S. & Shaanan, B. (1998). J. Mol. Biol. 277, 917-932.
22. Engh, R. A. & Huber, R. (1991). Acta Cryst. A47, 392-400.
23. Hardman, K. D. & Ainsworth, C. F. (1972). Biochemistry, 11, 4910-4919.
24. Jones, T. A. (1978). J. Appl. Cryst. 11, 268-272.
25. Kabsch, W. (1988). J. Appl. Cryst. 21, 916-924.
26. Klotz, I. M., Darnall, D. W. & Langerman, N. R. (1975). The Proteins, Vol. 3, edited by H. Neurath & R. L. Hill, pp. 293-411. New York:Academic Press
27. Kraulis, P. (1991). J. Appl. Cryst. 24, 946-950.
28. Langklide, N. C. & Ørntoft, T. F. (1995). Glycoconj. J. 12,567.
29. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
30. Loris, R., Hamelryck, T., Bouckaert, J. & Wyns, L. (1998). Biochim. Biophys. Acta, 1383, 9-36.
31. Loris, R., Maes, D., Poortmans, F., Wyns, L. & Bouckaert, J. (1996). J. Biol. Chem. 271, 30614-30618.
32. Loris, R., Steyaert, J., Maes, D., Lisgarten, J., Pickersgill,R. & Wyns,L. (1993). Biochemistry, 32, 8772-8781.
33. Luzzati, V. (1952). Acta Cryst. 5, 802-810.
34. Majumdar, T. & Surolia, A. (1978). Prep. Biochem. 8, 119-131.
35. Monod, J., Wyman, J. & Changeux, J.-P. (1965). J. Mol. Biol. 12, 88-118.
36. Naismith, J. H., Emmerich, C., Habash, J., Harrop, S., Helliwell, J. R., Hunter, W. N., Raftery, J., Kalb (Gilboa), A. J. & Yariv, J. (1994). Acta Cryst. D50, 847-858.
37. Naismith, J. H. & Field, R. A. (1996). J. Biol. Chem. 271, 972-976.
38. Olsen, L. R., Dessen, A., Gupta, D., Sabesan, S., Sacchettini, J. C. & Brewer, C. F. (1997). Biochemistry, 36, 15073-15080.
39. Otwinowski, Z. (1993). Proceedings of the CCP4 Study Weekend. Data Collection and Processing, edited by L. Sawyer, N. Isaacs & S. Bailey, pp. 56-62. Warrington: Daresbury Laboratory.
40. Pereira, M. E. A., Kabat, E. A., Lotan, R. & Sharon, N. (1976). Carbohydr. Res. 51, 107-118.
41. Prabu, M. M., Sankaranarayanan, R., Puri, K. D., Sharma, V., Surolia, A., Vijayan, M. & Suguna, K. (1998). J. Mol. Biol. 276, 787-796.
42. Quiocho, F. A. (1989). Pure Appl. Chem. 61, 1293-1306.
43. Quiocho, F. A., Wilson, D. K. & Vyas, N. K. (1989). Nature (London), 340, 404-407.
44. Ramachandran, G. N., Ramakrishnan, C. & Sasisekharan, V. (1963). J. Mol. Biol. 7, 95-99.
45. Ravishankar, R., Ravindran, M., Suguna, K., Surolia A. & Vijayan, M. (1997). Curr. Sci. 72, 855-861.
46. Ravishankar, R., Ravindran, M., Suguna, K., Surolia, A. & Vijayan, M. (1999). Curr. Sci. 76, 1393.
47. Ravishankar, R., Surolia, A., Vijayan, M., Lim, S. & Kishi, Y. (1998). J. Am. Chem. Soc. 120, 11297-11303.
48. Reeke, G. N. Jr & Becker, J. W. (1986). Science, 234, 1108-1111.
49. Reeke, G. N. Jr, Becker, J. W. & Edelman, G. M. (1975). J. Biol. Chem. 250, 1525-1547.
50. Rini, J. M. (1995). Annu. Rev. Biophys. Biomol. Struct. 24, 551-557.
51. Rini, J. M., Hardman, K. D., Einspahr, H., Suddath, F. L. & Carver, J. P. (1993). J. Biol. Chem. 268, 10126-10132.
52. Schwarz, F. P., Puri, K. & Surolia, A. (1991). J. Biol. Chem. 266, 24344-24350.
53. Shaanan, B., Lis, H. & Sharon, N. (1991). Science, 254, 862-866.
54. Sharma, V., Srinivas, V. R., Adhikari, P., Vijayan, M. & Surolia, A. (1998). Glycobiology, 10, 1007-1012.
55. Sharma, V. & Surolia, A. (1997). J. Mol. Biol. 267, 433-445.
56. Sharma, V., Vijayan, M. & Surolia, A. (1996). J. Biol. Chem. 271, 21209-21213.
57. Sharon, N. & Lis, H. (1989a). Lectins. London: Chapman & Hall.
58. Sharon, N. & Lis, H. (1989b). Science, 246, 227-246.
59. Surolia, A., Sharon, N. & Schwarz, F. P. (1996). J. Biol. Chem. 271, 17697-17703.
60. Swamy, M. J., Gupta, D., Mahanta, S. K. & Surolia, A. (1991).Carbohydr. Res. 213, 59-67.
61. Toone, E. J. (1994). Curr. Opin. Struct. Biol. 4, 719-728.
62. Vijayan, M. (1980). Computing in Crystallography, edited by R. Diamond, S. Ramaseshan & K. Venkatesan, pp. 19.01-19.26. Bangalore: Indian Academy of Sciences.
63. Weis, W. I. & Drickamer, K. (1996). Annu. Rev. Biochem. 65, 441-473.
64. Young, N. M & Oomen, R. P. (1992). J. Mol. Biol. 228, 924-934.
65. Young, N. M., Watson, D. C. & Williams, R. E. (1984). Biochem. J. 222, 41-48.