Construction and characterization of a common bean bacterial artificial chromosome library

Plant Molecular Biology

Volumn 40, Issue 6, 1999, Pages 977-983

  Vanhouten, Wim ^a   MacKenzie, Sally ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

BAC library; Common bean; Fertility restorer; Legume genomics

Indexed keywords

BACTERIAL GENETICS; CLONE; ENDONUCLEASE; ENZYME ASSAY; GENE LOCUS; GENE MAPPING; METHYLTRANSFERASE; MOLECULAR LIBRARY; PLANT GENOME; PROBE;

CHROMOSOMES, BACTERIAL; CLONING, MOLECULAR; DNA PROBES; DNA, PLANT; FABACEAE; FERTILITY; GENES, PLANT; GENETIC MARKERS; GENOMIC LIBRARY; LINKAGE (GENETICS); NUCLEIC ACID HYBRIDIZATION; PLANTS, MEDICINAL;

EID: 0033180242     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006234823105     Document Type: Article

References (48)

1. Adam-Blondon, A.F., Sevignac, M. and Dron, M. 1994. A genetic map of common bean to localize specific resistance genes against anthracnose. Genome 37: 915-924.
2. Arumuganathan, K. and Earle, E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
3. Bassett, M.J. and Shuh, D.M. 1982. Cytoplasmic male sterility in common bean. J. Am. Soc. Hort. Sci. 107: 791-793.
4. Bent, E., Johnson, S. and Bancroft, I. 1998. BAC representation of two low-copy regions of the genome of Arabidopsis thaliana. Plant J. 13: 849-855.
5. Bonnema, G., Hontelez, J., Verkerk, R., Zhang, Y.Q., van Daelen, R., van Kammen, A. and Zabel, P. 1996. An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato. Plant J. 9: 125-133.
6. Boutin, S.R., Young, N.D., Olson, T.C., Yu, Z.H., Shoemaker, R.C. and Vallejos, C.E. 1995. Genome conservation among three legume genera detected with DNA markers. Genome 38: 928-937.
7. Buschges, R., Hollricher, K., Panstruga, R., Simons, G., Wolter, M., Frijters, A., van Daelen, R., van der Lee, T., Diergaarde, P., Groenendijk, J., Topsch, S., Vos, P., Salamini, F. and Schulze-Lefert, P. 1997. The barley MLO gene: a novel control element of plant pathogen resistance. Cell 8: 695-705.
8. Capote-Mainez, N. and Sanchez, F. 1997. Characterization of the common bean uricase II and its expression in organs other than nodules. Plant Physiol. 115: 1307-1317.
9. Civardi, L., Xia, Y.J., Edwards, K.J., Schnable, P.S. and Nikolau, B.J. 1994. The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome. Proc. Natl. Acad. Sci. USA 91: 8268-8272.
10. Creusot, F., Sevignac, M. and Dron, M. 1992. Large-scale mapping using high molecular weight DNA from P. vulgaris. Plant Mol. Biol. Rep. 10: 207-218.
11. Cui, X.Q., Wise, R.P. and Schnable, P.S. 1996. The rf2 nuclear restorer gene of male-sterile, T-cytoplasm maize. Science 272: 1334-1336.
12. Danesh, D., Penuela, S., Mudge, J., Denny, R.L., Nordstrom, H., Martinez, J.P. and Young, N.V. 1998. A bacterial artificial chromosome library for soybean and identification of clones near a major cyst nematode resistance gene. Theor. Appl. Genet. 96: 196-202.
13. Dunford, R., Vilageliu, L.I. and Moore, G. 1993. Stabilization of a yeast artificial chromosome containing plant DNA using a recombination-deficient host. Plant Mol. Biol. 21: 1187-1189.
14. Edwards, K.J., Thompson, H., Edwards, D., de Saizieu, A., Sparks, C., Thompson, J.A., Greenland, A.J., Eyers, M. and Schuch, W. 1992. Construction and characterization of a yeast artificial chromosome library containing three haploid maize genome equivalents. Plant Mol. Biol. 19: 299-308.
15. Fatokun, C.A., Danesh, D., Menancio-Hautea, D.I. and Young, N.D. 1993. A linkage map for cowpea [Vigna unguiculata (L.) Walp.] based on DNA markers (2N = 22). In: J.S. O'Brien (Ed.), Genetic Maps 1992: A compilation of linkage and restriction maps of genetically studied organisms. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 6.256-6.258.
16. Feinberg, A.P. and Vogelstein, B. 1983. A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
17. Frijters, A.C.J., Zhang, Z., Van Damme, M., Wang, G.-L., Ronald, P.C. and Michelmore, R.W. 1997. Construction of a bacterial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor. Appl. Genet. 94: 390-399.
18. Green, E.D., Riethman, H.C., Dutchik, J.E. and Olson, M.V. 1991. Detection and characterization of chimeric yeast artificial chromosome clones. Genomics 11: 658-669.
19. Haley, S.D., Miklas, P.N., Stavely, J.R., Byrum, J. and Kelly, J.D. 1993. Identification of RAPD markers linked to a major rust resistance gene block in common bean. Theor. Appl. Genet. 86: 505-512.
20. Hartweck, L.M., Cardona, C. and Osborn, T.C. 1997. Bruchid resistance of common bean lines having an altered seed protein composition. Theor. Appl. Genet. 95: 1018-1023.
21. He, S., Lyznik, A. and Mackenzie, S. 1995a. Pollen fertility restoration by nuclear gene Fr in CMS bean: nuclear-directed alteration of a mitochondrial population. Genetics 139: 955-962.
22. He, S., Yu, Z.H., Vallejos, C.E. and Mackenzie, S.A. 1995b. Pollen fertility restoration by nuclear gene Fr in CMS common bean: an Fr linkage map and the mode of Fr action. Theor. Appl. Genet. 90: 1056-1062.
23. Janska, H. and Mackenzie, S. 1993. Unusual mitochondrial genome organization in cytoplasmic male sterile common bean and the nature of cytoplasmic reversion to fertility. Genetics 135: 869-879.
24. Jia, M.H., He, S., Vanhouten, W. and Mackenzie, S. 1997. Nuclear fertility restorer genes map to the same linkage group in cytoplasmic sterile bean. Theor. Appl. Genet. 95: 205-210.
25. Keim, P., Diers, B.W., Olson, T.C. and Shoemaker, R.C. 1990. RFLP mapping in soybean association between marker loci and variation in quantitative traits. Genetics 126: 735-742.
26. Larin, Z., Monaco, A.P. and Lehrach, H. 1991. Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88: 4123-4127.
27. Mackenzie, S. 1991. Identification of a sterility-inducing cytoplasm in a fertile accession line of Phaseolus vulgaris L. Genetics 127: 411-416.
28. Mackenzie, S. and Bassett, M. 1987. Genetics of restoration in cytoplasmic male sterile Phaseolus vulgaris L. Theor. Appl. Genet. 74: 642-645.
29. Marek, L.F. and Shoemaker, R.C. 1997. BAC contig development by fingerprint analysis in soybean. Genome 40: 420-427.
30. Martin, G.B., Ganal, M.W. and Tanksley, S.D. 1992. Construction of a yeast artificial chromosome library of tomato and identification of cloned segments of two disease resistance loci. Mol. Gen. Genet. 223: 25-32.
31. Martin, G.B., Brommenschenkel, S.H., Chunmongse, J., Frary, A., Ganal, M.W., Spivey, R., Wu, T., Earle, E.D. and Tanksley, S.D. 1993. Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262: 1432-1436.
32. Menancio-Hautea, D., Fatokun, C.A., Kumar, L., Danesh, D. and Young, N.D. 1993a. Comparative genome analysis of mung-bean (Vigna radiata L. Wilczek) and cowpea (V. unguiculata L. Walpers) using RFLP mapping data. Theor. Appl. Genet. 86: 797-810.
33. Menancio-Hautea, D., Kumar, L., Danesh, D. and Young, N.D. 1993b. A genome map for mungbean [Vigna radiata (L.) Wilczek] based on DNA genetic markers (2n = 2x = 22). In: J.S. O'Brien (Ed.) Genetic Maps 1992: A compilation of linkage and restriction maps of genetically studied organisms, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 6.259-6.261.
34. Nodari, R.O., Tsai, S.M., Gilbertson, R.L. and Gepts, P. 1993a. Towards an integrated linkage map of common bean. 2. Development of an RFLP-based linkage map. Theor. Appl. Genet. 85: 513-520.
35. Nodari, R.O., Tsai, S.M., Guzman, P., Gilbertson, R.L. and Gepts, P. 1993b. Toward an integrated linkage map of common bean. III. Mapping genetic factors controlling host-bacteria interactions. Genetics 134: 341-350.
36. Sambrook, J., Fritsch, J.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
37. San Miguel, P., Tikhonov, A., Jin, Y.-K., Motchoulskaia, N., Akharov, D., Melake-Berhan, A., Springer, P.S., Edwards, K.J., Avramova, Z. and Bennetzen, J.L. 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
38. Schnable, P.S. and Wise, R.P. 1998. The molecular basis of cytoplasmic male sterility and fertility restoration. Trends Plant Sci. 3: 175-181.
39. Sheng, Y., Mancino, V. and Birren, B. 1995. Transformation of Escherichia coli with large DNA molecules by electroporation. Nucl. Acids Res. 23: 1990-1996.
40. Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, Y. and Simon, M. 1992. Cloning and stable maintanance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-vector-based vector. Proc. Natl. Acad. Sci. USA 89: 8794-8797.
41. Tague, B.W., Dickinson, C.D. and Chrispeels, M.J. 1990. A short domain of the plant vacuolar protein phytohemagglutinin targets invertase to the yeast vacuole. Plant Cell 2: 533-546.
42. Umehara, Y., Inagaki, A., Tanoue, H., Yasukochi, T., Nagamura, Y., Saji, S., Fujimura, T. and Minobe, Y. 1995. Construction and characterization of a rice YAC library for physical mapping. Mol. Breed. 1: 79-89.
43. Vallejos, C.E., Sakiyama, N.S. and Chase, C.D. 1992. A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131: 733-740.
44. Wang, G.L., Holsten, T.E., Song, W., Wang, H.P. and Ronald, P.C. 1995. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7: 525-533.
45. Wing, R.A., Rastogi, V.K., Zhang, H.B., Paterson, A.H. and Tanksley, S.D. 1993. An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning. Plant J 4: 893-898.
46. Woo, S.S., Jiang, J., Gill, B.S., Paterson, A.M. and Wing, R.A. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl. Acids. Res. 22: 4922-4931.
47. Young, R.A., Melotto, M., Nodari, R.O. and Kelly, J.D. 1998. Marker-assisted dissection of the oligogenic anthracnose resistance in the common bean cultivar 'G2333'. Theor. Appl. Genet. 96: 87-94.
48. Yu, L.M., Lamb, C.J. and Dixon, R.A. 1993. Purification and biochemical characterization of proteins which bind to the H-box cis-element implicated in transcriptional activation of plant defense genes. Plant J. 3: 805-816.