Stability of G,A triple helices

Nucleic Acids Research

Volumn 27, Issue 13, 1999, Pages 2699-2707

  Debin, A ^a,c   Laboulais, C ^a   Ouali, M ^a   Malvy, C ^a   Le Bret, M ^a   Svinarchuk, F ^a,b  

^a INSTITUT GUSTAVE ROUSSY   (France)

^b INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^c Biovector Therapeutics   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CHLORIDE ION; DOUBLE STRANDED DNA; GUANINE; MAGNESIUM ION; OLIGONUCLEOTIDE; PURINE NUCLEOTIDE; SODIUM ION;

ARTICLE; BASE MISPAIRING; MOLECULAR STABILITY; PRIORITY JOURNAL; SYSTEM ANALYSIS; TEMPERATURE; TRIPLE HELIX;

BASE SEQUENCE; COMPUTER SIMULATION; DNA; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MONTE CARLO METHOD; NUCLEIC ACID CONFORMATION;

EID: 0033168091     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.13.2699     Document Type: Article

References (46)

1. Beasty,M. and Behe,M.J. (1988) Nucleic Acids Res., 16, 1517-1528.
2. O'Neill,D., Bornschlegel,K., Flamm,M., Castle,M. and Bank,A. (1991) Proc. Natl Acad. Sci. USA, 88, 8953-8957.
3. Maher,L.J. (1996) Cancer Invest., 14, 66-82.
4. Majumdar,A., Khorlin,A., Dyatkina,N., Lin,F.L., Powell,J., Liu,J., Fei,Z., Khripine,Y., Watanabe,K.A., George,J., Glazer,P.M. and Seidman,M.M. (1998) Nature Genet., 20, 212-214.
5. Vasquez,K.M. and Wilson,J.H. (1998) Trends Biochem. Sci., 23, 4-9.
6. Wang,G., Seidman,M.M. and Glazer,P.M. (1996) Science, 271, 802-805.
7. Moser,H.E. and Dervan,P.B. (1987) Science, 238, 645-650.
8. Le Doan,T., Perrouault,L., Praseuth,D., Habhoub,N., Decout,J.L., Thuong,N.T., Lhomme,J. and Helene,C. (1987) Nucleic Acids Res., 15, 7749-7760.
9. Beal,P.A. and Dervan,P.B. (1991) Science, 251, 1360-1363.
10. Malkov,V.A., Voloshin,O.N., Soyfer,V.N. and Frank-Kamenetskii,M.D. (1993) Nucleic Acids Res., 21, 585-591.
11. Cooney,M., Czernuszewicz,G., Postel,E.H., Flint,S.J. and Hogan,M.E. (1988) Science, 241, 456-459.
12. Puglisi,J.D. and Tinoco,I.,Jr (1989) Methods Enzymol., 180, 304-335.
13. Svinarchuk,F., Paoletti,J. and Malvy,C. (1995) J. Biol. Chem., 270, 14068-14071.
14. Svinatchuk,F., Bertrand,J.-R. and Malvy,C. (1994) Nucleic Acids Res., 22, 3742-3747.
15. Piriou,J.M., Ketterlé,Ch., Gabarro-Arpa,J., Cognet,J.A.H. and Le Bret,M. (1993) Biophys. Chem., 50, 323-343.
16. Le Bret,M., Gabarro-Arpa,J., Gilbert,J.C. and Lemaréchal,C. (1991) J. Chim. Phys., 88, 2489-2496.
17. Gabarro-Arpa,J., Cognet,J.A.H. and Le Bret,M. (1992) J. Mol. Graphics, 10, 166-173.
18. Cornell,W.D., Cieplak,P., Bayly,C.I., Goulg,I.R., Merz,K.M.,Jr, Ferguson,D.M., Spellmeyer,D.C., Fox,T., Caldwell,J.W. and Kollman,P.A. (1995) J. Am. Chem. Soc., 117, 5179-5197.
19. Aqvist,J. (1990) J. Phys. Chem., 94, 8021-8024.
20. Le Bret,M. and Zimm,B.H. (1984) Biopolymers, 23, 271-285.
21. Metropolis,N., Rosenbluth,A.W., Rosenbluth,M.N., Teller,A.H. and Teller,E. (1953) J. Chem. Phys., 21, 1087-1092.
22. Gordon,H. and Goldman,S. (1989) Mol. Simulat., 3, 213-225.
23. Lavery,R., Sklenar,H., Zakrzwska,K. and Pullman,B. (1986) J. Biomol. Struct. Dyn., 3, 989-1014.
24. Pilch,D.S., Levenson,C. and Shafer,R.H. (1991) Biochemistry, 30, 6081-6087.
25. Wang,G., Levy,D.D., Seidman,M.M. and Glazer,P.M. (1995) Mol. Cell. Biol., 15, 1759-1768.
26. Wang,G. and Glazer,P.M. (1995) J. Biol. Chem., 270, 22595-22601.
27. Perkins,B.D., Wilson,J.H., Wensel,T.G. and Vasquez,K.M. (1998) Biochemistry, 37, 11315-11322.
28. Roberts,R.W. and Crothers,D.M. (1996) Proc. Natl Acad. Sci. USA, 93, 4320-4325
29. Lacoste,J., Francois,J.C. and Helene,C. (1997) Nucleic Acids Res., 25, 1991-1998
30. Noonberg,S.B., Francois,J.C., Praseuth,D., Guieysse-Peugeot,A.L., Lacoste,J., Garestier,J. and Helene,C. (1995) Nucleic Acids Res., 23, 4042-4049.
31. Cheng,A.J., Wang,J.C. and Van Dyke,M.W. (1998) Antisense Nucleic Acid Drug. Dev., 8, 215-225.
32. Cheng,A.J. and Van Dyke,M.W. (1997) Gene, 197, 253-260
33. Olivas,W.M. and Maher,L.J. (1995) Biochemistry, 34, 278-284.
34. Gowers,D.M. and Fox,K.R. (1999) Nucleic Acids Res., 27, 1569-1577.
35. Hardenbol,P. and Van Dyke,M. (1996) Proc. Natl Acad. Sci. USA, 93, 2811-2816.
36. Ouali,M., Bouziane,M., Ketterlé,C., Gabarro-Arpa,J., Auclair,C. and Le Bret,M. (1996) J. Biomol. Struct. Dyn., 13, 835-853.
37. Ketterlé,C., Gabarro-Arpa,J., Ouali,M., Bouziane,M., Auclair,C., Helissey,Ph., Giorgi-Renault,S. and Le Bret,M. (1996) J. Biomol. Struct. Dyn., 13, 963-977.
38. Jayaram,B., Swaminathan,S., Beveridge,D.L., Sharp,K. and Honig,B. (1990) Macromolecules, 23, 3156-3165.
39. Jayaram,B. and Beveridge,D.L. (1991) J. Phys. Chem., 95, 2506-2516.
40. Weiner,S.J., Kollman,P.A., Case,D.A., Singh,U.C., Ghio,C., Alagona,G., Profeta,S.,Jr and Weiner,P. (1984) J. Am. Chem. Soc., 106, 765-784.
41. Beral-Uruchurtu,M.I. and Ortega-Blake,I. (1995) J. Chem. Phys., 103, 1588-1598.
42. Van Meervelt,L., Vlieghe,D., Dautant,A., Gallois,B., Précigoux,G. and Kennard,O. (1995) Nature, 374, 742-744.
43. Weerasinghe,S., Smith,P.E., Mohan,V., Cheng,Y.K. and Montgomery Pettitt,B. (1995) J. Am. Chem. Soc., 117, 2147-2158.
44. Blume,S.W., Lebowitz,J., Zacharias,W., Guarcello,V., Mayfield,C.A., Ebbinghaus,S.W., Bates,P., Jones,D.E., Trent,J., Vigneswaran,N. and Miller,D.M. (1999) Nucleic Acids Res., 27, 695-702.
45. Floris,R., Scaggiante,B., Manzini,G., Quadrifolio,F. and Xodo,L.E. (1999) Eur. J. Biochem., 260, 801-809.
46. Potaman,V.N. and Soyfer,V.N. (1994) J. Biomol. Struct. Dyn., 11, 1035-1040.