Mitochondrial cytochrome oxidase I sequence divergence in some chinese species of Charybdis (Crustacea: Decapoda: Portunidae)

Biochemical Systematics and Ecology

Volumn 27, Issue 5, 1999, Pages 461-468

  Chu, Ka Hou ^a   Tong, Jingou ^a   Chan, Tin Yam ^b  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^b NATIONAL TAIWAN OCEAN UNIVERSITY   (Taiwan)

Author keywords

Charybdis; Decapoda; Mitochondrial cytochrome oxidase I; Phylogenetics; Population genetics; Portunidae

Indexed keywords

CYTOCHROME C OXIDASE;

AMINO ACID SEQUENCE; ARTICLE; CRAB; ENZYME POLYMORPHISM; MITOCHONDRION; NONHUMAN; PHYLOGENY; SPECIES DIFFERENCE;

CHARYBDIS; CHARYBDIS AFFINIS; CHARYBDIS JAPONICA;

EID: 0033167895     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0305-1978(98)00115-X     Document Type: Article

References (29)

1. Avise, J. C., 1994. Molecular Markers, Natural History and Evolution. Chapman & Hall, New York.
2. Baldwin, B. S., Black, M., Sanjur, O., Gustafson, R., Lutz, R. A., Vrijenhoek, R. C., 1996. A diagnostic molecular marker for zebra mussels (Dreissena polymorpha) and potentially co-occurring bivalves: mitochondnal COI. Mol. Mar. Biol. Biotech. 5, 9-14.
3. Bert, T. M., McCarthy, K. J., Cruz-Lopez, H., Bogdanowicz, S., 1996. Character discriminatory power, character-set congruence, and the classification of individuals from hybrid zones: an example using stone crabs (Menippe). Evolution 50, 655-671.
4. Crandall, K. A., Fitzpatrick, J. F., Jr., 1996. Crayfish molecular systematics: using a combination of procedures to estimate phylogeny. System. Biol. 45, 1-26.
5. Dai, A., Yang, S., 1991. Crabs of the China Seas. China Ocean Press, Beijing.
6. Dall, W., Hill, B. J., Rothlisberg, N. W., Staples, D. J., 1990. The biology of Penaeidae. Adv. Mar. Biol. 27, 1-484.
7. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Felsenstein, J., 1993. Phylogeny Inference Package (PHYLIP). Version 3.5c. University of Washington, Seattle.
9. Hillis, D. M., Moritz, C. Mable, B., 1996. Molecular Systematics, 2nd edn. Sinauer, Sunderland, MA.
10. Huang, J. F., Yu, H. P., 1997. Illustrations of Swimming Crabs of Taiwan. National Museum of Marine Biology and Aquarium, Kaohsiung, Taiwan.
11. Irwin, D. M., Kocher, T. D., Wilson, A. C., 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32, 128-144.
12. Kocher, T. D., Thomas, W. K., Meyer, A., Edwards, S. V., Pääbo, S., Villableanca, F. X. Wilson, A. C., 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Nat. Acad. Sci., USA 86, 6196-6200.
13. Kornegay, J. R., Kocher, T. D., Williams, L. A., Wilson, A. C., 1993. Pathway of lysozyme evolution inferred from the sequences of cytochrome b in birds. J. Mol. Evol. 37, 367-379.
14. Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
15. Kumar, S., Tamura, K., Nei, M., 1993. MEGA (Molecular Evolutionary Genetics Analysis), version 1.01. Pennsylvania State University, University Park.
16. Lavery, S., Moritz, C., Fielder, D. R., 1996. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Mol. Ecol. 5, 557-570.
17. Nei, M. (1975) Molecular Population Genetics, North-Holland, Amsterdam.
18. Palumbi, S. R., 1994. Genetic divergence, reproductive isolation, and marine speciation. Ann. Rev. Ecol. Syst. 25, 547-572.
19. Palumbi, S. R., Benzie, J., 1991. Large mitochondrial differences between morphologically similar penaeid shrimp. Mol. Mar. Biol. Biotech. 1, 27-34.
20. Patterson, C., Williams, D. M., Humphries, C. J., 1993. Congruence between molecular and morphological phylogenies. Ann. Rev. Ecol. Syst. 24, 153-188.
21. Saiki, R., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., Mullis, K. B. Erlich. H. A., 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487-491.
22. Saitou, N., Nei, M., 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 10, 471-483.
23. Sanger, F., Nicklen, S., Coulson, A. R., 1977. DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sci, USA 74, 5463-5467.
24. Sarver, S. K., Silberman, J. D., Walsh, P. J., 1998. Mitochondrial DNA sequence evidence supporting the recognition of two subspecies or species of the Florida spiny lobster Panulirus argus. J. Crust. Biol. 17, 177-186.
25. Swofford, D., 1993. Phylogenetic Analysis Using Parsimony (PAUP). Version 3.1.1. Illinois Natural Histroy Survery, Champaign, Illinois.
26. Tam, Y. K., Kornfield, I., 1998. Phylogenetic relationships of clawed lobster genera (Decapoda: Nephropidae) based on mitochondrial 16S rRNA gene sequences. J. Crust. Biol. 18, 138-146.
27. Tam, Y. K., Kornfield, I., Ojeda, F. P., 1996. Divergence and zoogeography of mole crabs, Emerita spp. (Decapoda: Hippidae), in the Americas. Mar. Biol. 125, 489-497.
28. Tong, J. G., Chu, K. H., 1996. Enzyme polymorphism in three species of Charybdis from Zhujiang estuary. Paper presented in the Asia-pacific Symposium on the Science and Management of Coastal Environment, 25-28 June, Hong Kong.
29. Wee, D. P. C., Ng, P. K. L., 1995. Swimming crabs of the genera Charybdis De Hann, 1833, and Thalamita Latreille, 1829 (Crustacea: Decapoda: Brachyura: Portunidae) from Peninsular Malaysia and Singapore. Raffles Bull. Zool. (Suppl. No.) 1, 1-128.