Genetic diversity in Elymus caninus as revealed by isozyme, RAPD, and microsatellite markers

Genome

Volumn 42, Issue 3, 1999, Pages 420-431

  Sun, Gen Lou ^a   Díaz, Oscar ^a   Salomon, Björn ^a   Von Bothmer, Roland ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Elymus caninus; Genetic diversity; Isozymes; Microsatellites; RAPDs

Indexed keywords

GENETIC CORRELATION; GENETIC DIVERSITY; GENETIC VARIANCE; ISOENZYME; MICROSATELLITE DNA; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA;

ELYMUS CANINUS;

EID: 0033150349     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/gen-42-3-420     Document Type: Article

References (49)

1. Abo-elwafa, A., Murai, K., and Shimada, T. 1995. Intra- and inter-specific variations in Lens revealed by RAPD markers. Theor. Appl. Genet. 90: 335-340.
2. Adams, W.T. 1983. Application of isozymes in tree breeding. In Isozymes in Plant Genetics and Breeding, Part A. Edited by S.D. Tanksley, T.J. Orton. Elsevier Science Publ., Amsterdam. pp. 381-400.
3. Akkaya, M.S., Bhagwat, A.A., and Cregan, P.B. 1992. Length polymorphisms of simple sequence repeat DNA in soybean. Genetics, 132: 1131-1139.
4. Ayala, F.J. 1983. Enzymes as taxonomic characters. In Protein Polymorphism: Adaptive and Taxonomic Significance. The Systematics Association Special Volume No. 24. Edited by G.S. Oxford, D. Rollonson. Academic Press, New York. pp. 3-26.
5. Beer, S.C., Goffreda, J., Phillips, T.D., Murphy, J.P., and Sorrells, M.E. 1993. Assessment of genetic variation in Avena sterilis using morphological traits, isozyme, and RFLPs. Crop Sci. 33:1386-1393.
6. Brown, S.M., Hopkins, M.S., Mitchell, S.E., Senior, M.L., Wang, T.Y., Duncan, R.R., Gonzalez-Candelas, F., and Kresovich, S. 1996. Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum (Sorghum bicolor (L.) Moench). Theor. Appl. Genet. 93: 190-198.
7. Brummer, E.C., Bouton, J.H., and Kochert, G. 1995. Analysis of annual Medicago species using RAPD markers. Genome, 38:362-367.
8. Chalmers, K.J., Waugh, R., Sprent, J.I., Simmons, A.J., and Powell, W. 1992. Detection of genetic variation between and within populations of Gliricidi sepium and G. maculata using RAPD markers. Heredity, 69: 465-472.
9. Chen, K.F., and Sun, M. 1997. Genetic diversity and relationships detected by isozyme and RAPD analysis of crop and wild species of Amaranthus. Theor. Appl. Genet. 95: 865-873.
10. Condit, R., and Hubbell, S.P. 1991. Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome, 34: 66-71.
11. Delsney, M., Grellet, F., Tremousaygue, D., Raynal, M., and Panabieres, F. 1988. Structure, evolution et expression de l'ADN nucleaire. Bull. Soc. Bot. Fr. 135: 23-38.
12. Diaz, O., Salomon, B., and von Bothmer, R. 1996. Genetic variation in Nordic Elymus species (Poaceae). In Fifth Workshop of the Nordic Genome Initiative - Program and Abstracts, June 14-17, Laugarvatn, Iceland. Edited by R.T. Geirsson. University Hospital of Iceland, Reykjavik. p. 56.
13. Diaz, O., Salomon, B., and von Bothmer, R. 1998. Description of isozyme polymorphisms in Elymus species using starch gel electrophoresis. In Triticeae III. Edited by A.A. Jaradat. Science Publishers, Enfield, New Hampshire. pp. 199-208.
14. Echt, C.S., May-Marquardt, P., Hseih, M., and Zahorchak, R. 1996. Characterization of microsatellite markers in eastern white pine. Genome, 39: 1102-1108.
15. Heun, M., and Helentjaris, T. 1993. Inheritance of RAPDs in F1 hybrids of corn. Theor. Appl. Genet. 85: 961-968.
16. Heun, M., Murphy, J.P., and Phillips, T.D. 1994. A comparison of RAPD and isozyme analyses for determining the genetic relationships among Avena sterilis L. accessions. Theor. Appl. Genet. 87: 689-696.
17. Junghans, H., and Metzlaff, M. 1990. A simple and rapid method for the preparation of total plant DNA. Biotechniques, 8: 176.
18. Kazan, K., Manners, J.M., and Cameron, D.F. 1993. Genetic relationships and variation in the Stylosanthes guianensis species complex assessed by random amplified polymorphic DNA. Genome, 36: 43-49.
19. Kostina, E.V., Agafonov, A.V., and Salomon, B. 1998. Electrophoretic properties and variability of endosperm proteins in Elymus caninus (L.) L. In Triticeae III. Edited by A.A. Jaradat. Science Publishers, Enfield, New Hampshire. pp. 265-272.
20. Kresovich, S., Szewc-McFadden, A.K., Bliek, S.M., and McFerson, J.R. 1995. Abundance and characterization of simple sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (Rapeseed). Theor. Appl. Genet. 91: 206-211.
21. Lanner-Herrera, C., Gustafsson, M., Talt, A.-S., and Bryngelsson, T. 1996. Diversity in natural populations of wild Brassica oleracea as estimated by isozyme and RAPD analysis. Genet. Res. Crop Evol. 43: 13-23.
22. Linhart, Y.B., and Grant, M.C. 1996. Evolutionary significance of local genetic differentiation in plants. Annu. Rev. Ecol. Syst. 27: 237-277.
23. Litt, M., and Luty, J.A. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 397-401.
24. Liu, Z., and Furnier, G.R. 1993. Comparison of allozyme, RFLP, and RAPD markers for revealing genetic variation within and between trembling aspen and bigtooth aspen. Theor. Appl. Genet. 87: 97-105.
25. Liu, Z.W., Jarret, R.L., Duncan, R.R., and Kresovich, S. 1994. Genetic relationships and variation among ecotypes of seashore paspalum (Paspalum vaginatum) determined by random amplified polymorphic DNA markers. Genome, 37: 1011-1017.
26. Lu, B.R. 1993. Biosystematic Investigations of Asiatic Wheatgrasses-Elymus L. (Triticeae: Poaceae). The Swedish University of Agricultural Sciences, Alnarp, Sweden.
27. Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
28. Messmer, M.M., Melchinger, A.E., Woodman, W.L., Lee, E.A., and Lamkey, K.R. 1991. Genetic diversity among progenitors and elite lines from the Iowa Stiff Stalk Synthetic (BSSS) maize population: Comparison of allozyme and RFLP data. Theor. Appl. Genet. 83: 97-107.
29. Morgante, M., and Olivieri, A.M. 1993. PCR amplified microsatellites in plant genetics. Plant J. 3: 175-182.
30. Moser, H., and Lee, M. 1994. RFLP variation and genealogical distance, multivariate distance, heterosis, and genetic variation in oats. Theor. Appl. Genet. 87: 947-956.
31. Nevo, E. 1988a. Genetic diversity in nature: Patterns and theory. Evol. Biol. 23: 217-247.
32. Nevo, E. 1988b. Natural selection in action: The interface of ecology and genetics in adaption and speciation at the molecular and organism levels. In The Zoogeography of Israel. Edited by Y. Yom-Tov and E. Tchernov. Dr. Junk Publishers, The Netherlands, pp. 411-438.
33. Nevo, E., Apelbaum-Elkaher, I., Garty, J., and Beiles, A. 1997. Natural selection causes microscale allozyme diversity in wild barley and a lichen at 'Evolution Canyon', Mt. Carmel, Israel. Heredity, 78: 373-382.
34. Olson, M., Hood, L., Cantor, C., and Botstein, D. 1989. A common language for physical mapping of the human genome. Science, 245: 1434-1435.
35. Powell, W., Morgante, M., Andre, C., Hanafey, M., Vogel, J., Tingey, S., and Rafalski, A. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
36. Provan, J., Powell, W., and Waugh, R. 1996. Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum). Theor. Appl. Genet. 92: 1078-1084.
37. Rajora, O.P. 1990. Marker allozyme genes and alleles for differentiation of Populus deltoides, P. nigra, P maximowiczii, and their interspecific hybrids. Can. J. Bot. 68: 990-998.
38. Rohlf, F.J. 1993. Numerical Taxonomy and Multivariate Analysis System. V. 1.80. Exeter Software, Setauket, N.Y.
39. Rus-Kortekaas, W., Smulders, M.J.M., Arens, P., and Vosman, B. 1994. Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA. Genome, 37: 375-381.
40. Russell, J.R., Fuller, J.D., Macaulay, M., Hatz, B.G.B., Jahoor, A., Powell, W., and Waugh, R. 1997. Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor. Appl. Genet., 95: 714-722.
41. Saghai-Maroof, M.A., Biyashev, R.M., Yang, G.P., Zhang, Q., and Allard, R.W. 1994. Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal location and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 91: 5466-5470.
42. Smith, O.S., Smith, J.S.C., Bowen, S.L., and Tenborg, R.A. 1992. Numbers of RFLP probes necessary to show associations between lines. Maize Genet. Coop. Newslett. 66: 66.
43. Song, K., Osborne, T.C., and Williams, P.H. 1990. Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs). 3. Genome relationships in Brassica and related genera and the origin of B. oleracea and B. rapa (syn. campestris). Theor. Appl. Genet. 79: 497-506.
44. Sun, G.L., Salomon, B., and von Bothmer, R. 1997. Analysis of tetraploid Elymus species using wheat microsatellite markers and RAPD markers. Genome, 40: 806-814.
45. Sun, G.L., Salomon, B., and von Bothmer, R. 1998. Characterization and analysis of microsatellite loci in Elymus caninus (Triticeae). Theor. Appl. Genet. 96: 676-682.
46. Terauchi, R., and Konuma, A. 1994. Microsatellite polymorphism in Dioscorea tokoro, a wild yam species. Genome, 37: 794-801.
47. Thormann, C.E., Ferreira, M.E., Camago, L.E., Tivang, J.G., and Osborn, T.C. 1994. Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theor. Appl. Genet. 88: 973-980.
48. Tinker, N.A., Fortin, M.G., and Mather, D.E. 1993. Random amplified polymorphic DNA and pedigree relationships in spring barley. Theor. Appl. Genet. 85: 976-984.
49. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V. 1990. DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.