Phylogeographical structure of the dover sole Microstomus pacificus: The larval retention hypothesis and genetic divergence along the deep continental slope of the northeastern pacific ocean

Molecular Ecology

Volumn 8, Issue 6, 1999, Pages 923-939

  Stepien, C A ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Continental slope; Dover sole; Genetic divergence; Microstomus pacificus; MtDNA control region; Pleuronectidae

Indexed keywords

FISH GENETICS; HAPLOTYPE; MITOCHONDRIAL DNA; PACIFIC OCEAN; POPULATION DISTRIBUTION; POPULATION GENETICS;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; ECOSYSTEM; FLATFISHES; GEOGRAPHY; HAPLOTYPES; LARVA; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHYLOGENY; VARIATION (GENETICS);

MICROSTOMUS PACIFICUS; PLEURONECTIDAE; TELEOSTEI; VERTEBRATA;

EID: 0033150279     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1999.00643.x     Document Type: Article

References (71)

1. Adams PB, Butler JL, Baxter CH et al. (1995) Population estimates of Pacific coast groundfishes from video transects and swept-area trawls. Fishery Bulletin, United States, 93, 446-455.
2. Ahlstrom EH, Moser HG (1975) Distributional atlas of fish larvae in the California Current region: Flatfishes (1955 through 1960). California Cooperative Oceanic Fisheries Investigation Atlas 23, San Diego, CA, USA.
3. Ahlstrom EH, Amaoka K, Hensley DA, Moser HG, Sumida BY (1984) Pleuronectiformes: Development. In: Ontogeny and Systematics of Fishes (eds Moser HG, Richards WJ, Cohen DM et al.), pp. 640-670. American Society of Ichthyologists and Herpetologists Special Publication 1. Allen Press, Inc., Lawrence, Kansas.
4. Avise JC (1994) Molecular Markers, Natural History and Evolution. Chapman & Hall, New York.
5. Avise JC, Neigel JE, Arnold J (1984) Demographic influences on mitochondrial DNA lineage Survivorship in animal populations. Journal of Molecular Evolution, 20, 99-105.
6. Barry JP, Greene HG, Orange DL et al. (1996) Biologic and geologic characteristics of cold seeps in Monterey Bay, California. Deep Sea Research I, 43, 1739-1762.
7. Bermingham E, Moritz C (1998) Comparative phylogeography: concepts and applications. Molecular Ecology, 7, 367-369.
8. Bernatchez L, Danzmann RG (1993) Congruence in control-region sequence and restriction-site variation in mitochondrial DNA of brook charr (Salvelinus fontinalis Mitchell). Molecular Biology and Evolution, 10, 1002-1014.
9. Bernatchez L, Martin S (1996) Mitochondrial DNA diversity in anadromous rainbow smelt, Osmerus mordux Mitchill: a genetic assessment of the member-vagrant hypothesis. Canadian Journal of Fisheries and Aquatic Sciences, 53, 424-433.
10. Bernatchez L, Guyomard R, Bonhomme F (1992) DNA sequence variation of the mitochondrial control region among geographically and morphologically remote European brown trout Salmo trutta populations. Molecular Ecology, 4, 285-297.
11. Bowen BW, Grant WS (1997) Phylogeography of the sardines (Sardinops spp.): assessing biogeographic models and population histories in temperate upwelling zones. Evolution, 51, 1601-1610.
12. Bremer JRA, Baker AJ, Mejuto J (1995) Mitochondrial DNA control region sequences indicate extensive mixing of swordfish (Xiphias gladius) populations in the Atlantic Ocean. Canadian Journal of Fisheries and Aquatic Sciences, 52, 1720-1732.
13. Bremer JRA, Mejuto J, Greig TW, Ely B (1996) Global population structure of the swordfish (Xiphias gladius L.) as revealed by analysis of the mitochondrial DNA control region. Journal of Experimental Marine Biology and Ecology, 197, 295-310.
14. Briggs JC (1974) Marine Zoogeography. McGraw-Hill, New York.
15. Butler JL, Dahlin KA, Moser HG (1996) Growth and duration of the planktonic phase and a stage based population matrix of Dover sole, Microstomus pacificus. Bulletin of Marine Science, 58, 29-43.
16. Chase MR, Etter RJ, Rex MA, Quattro JM (1998) Bathymetric patterns of genetic variation in a deep-sea protobranch bivalve, Deminucula atacellana. Marine Biology, 131, 301-308.
17. Collette BB, Potthoff T, Richards WJ et al. (1984) Scombroidei: Development and relationships. In: Ontogeny and Systematics of Fishes (eds Moser HG, Richards WJ, Cohen DM et al.), pp. 592-620. American Society of Ichthyologists and Herpetologists Special Publication 1. Allen Press, Inc., Lawrence, Kansas.
18. Digby TJ, Gray MW, Lazier CB (1992) Rainbow trout mitochondrial DNA: Sequence and structural characteristics of the noncoding control region and flanking tRNA genes. Gene, 118, 297-204.
19. Eschmeyer WN, Herald ES, Hamman H (1983) A Field Guide to Pacific Coast Fishes. Houghton Mifflin Co., Boston.
20. Excel (1997) Microsoft Office 97, Microsoft Corp., Seattle, WA, USA.
21. Excoffier L (1995) AMOVA, analysis of molecular variance, version 1.54. University of Geneva, Switzerland.
22. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA data. Genetics, 131, 479-491.
23. Fry JC, Iles TC, Randerson PF et al. (1993) Biological Data Analysis: a Practical Approach. Oxford University Press, New York, NY.
24. Grant WS, Bowen BW (1998) Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. Journal of Heredity, 89, 415-426.
25. Hickey BM (1979) The California Current system-hypotheses and facts. Progressive Oceanography, 8, 191-279.
26. Hunter JR, Butler JL, Kimbrell C, Lynn EA (1990) Bathymetric patterns in size, age, sexual maturity, water content, and caloric density of Dover sole, Microstomus pacificus. Calcofi (California Cooperative Fisheries Investigations) Report, 31, 132-144.
27. Huyer A, Kosro PM, Lentz SJ, Beardsley RC (1989) Poleward flow in the California Current system. In: Poleward Flows Along Eastern Ocean Boundaries, (eds Neshyba SJ, Mooers CNK, Smith RL et al.), pp. 144-159. Springer-Verlag, New York.
28. Kocher TD, Carleton KL (1997) Base substitution in fish mitochondrial DNA: Patterns and rates. In: Molecular Systematics of Fishes, (eds Kocher TD, Stepien CA), pp. 13-24. Academic Press, San Diego.
29. Kocher TD, Thomas WK, Meyer A et al. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the USA, 86, 6196-6200.
30. Kumar S, Tamura K, Nei M (1993) MEGA, molecular evolutionary genetics analysis, version. 1.01. Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, Pennsylvania.
31. Lee W, Conroy J, Howell WH, Kocher TD (1995) Structure and evolution of teleost mitochondrial control regions. Journal of Molecular Evolution, 41, 54-66.
32. Lo NC-H, Hunter JR, Moser HG, Smith PE (1993) A daily fecundity reduction method of biomass estimation with application to Dover sole Microstomus pacificus. Bulletin of Marine Science, 53, 842-863.
33. Low LL, ed. (1991) Status of living marine resources off the Pacific Coast of the United States as assessed in 1991. U.S. Department of Commerce, NOAA Technical Memorandum NMFS F/NWC, 210, 1-69.
34. Margush T, McMorris FR (1981) Consensus n-trees. Bulletin of Mathematical Biology, 43, 239-244.
35. Markle DF, Harris PM, Toole CL (1992) Metamorphosis and an overview of early-life-history stages in Dover sole Microstomus pacificus. Fishery Bulletin, United States, 90, 285-301.
36. Marliave JB (1986) Lack of dispersal of rocky intertidal fish larvae. Transactions of the American Fisheries Society, 115, 149-154.
37. McElroy D (1997) REAP, restriction enzyme analysis package, version 5. Western Kentucky University, Bowling Green, Kentucky.
38. McElroy D, Moran P, Bermingham E, Kornfield I (1992) REAP: an integrated environment for the manipulation and phylogenetic analysis of restriction data. Journal of Heredity, 83, 157-158.
39. Meyer A, Kocher TD, Basasibwaki P, Wilson AC (1990) Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature, 347, 550-553.
40. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, NY.
41. Nei M, Tajima F (1983) Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics, 105, 207-215.
42. Nei M, Miller JC (1990) A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data. Genetics, 105, 207-217.
43. Owen RW (1980) Eddies of the California Current system: Physical and ecological characteristics. In: The Channel Islands: Proceedings of a Multidisciplinary Symposium (ed. Powers DM), pp. 237-263. Santa Barbara Museum Natural History, Santa Barbara, California.
44. Palumbi S (1997) Molecular biogeography of the Pacific. Proceedings of the 8th International Coral Reef Symposium, 1, 91-96.
45. Pearcy WG, Hosie MJ, Richardson SL (1977) Distribution and duration of pelagic life of larvae of Dover sole, Microstomus pacificus, Rex sole, Gyptocephalus zachirus; and Petrale sole, Eopsetts jordani, in waters off Oregon. Fishery Bulletin, United States, 75, 173-183.
46. Pigeon D, Dodson JJ, Bernatchez L (1998) A mtDNA analysis of spatiotemporal distribution of two sympatric larval populations of rainbow smelt (Osmerus mordax) in the St. Lawrence River estuary, Quebec, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 55, 1739-1747.
47. Quirollo LF, Kalvass P (1987) Results of Dover sole tagging in waters off northern California, California Department of Fish and Game Marine Research Administration Report, 87, 1-73.
48. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
49. Rogers JB, Pikitch EK (1992) Numerical definition of groundfish assemblages caught off the coasts of Oregon and Washington using commercial fishing strategies. Canadian Journal of Fisheries and Aquatic Sciences, 49, 2648-2657.
50. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
51. Sakamoto K (1984) Interrelationships of the family Pleuronectidae (Pisces: Pleuronectiformes) Memoirs of the Faculty of Fisheries, Hokkaido University, 31, 95-215.
52. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences of the USA, 74, 5463-5467.
53. Shulman MJ, Bermingham E (1995) Early life histories, ocean currents, and the population genetics of Caribbean reef fishes. Evolution, 49, 896-910.
54. Siebenaller JF (1978) Genetic variability in deep-sea fishes of the genus Sebastolobus (Scorpaenidae). In: Marine Organisms (eds Battaglia B, Beardmore J), pp. 95-122. Plenum Press, New York.
55. Sinclair M (1988) Marine Populations: an Essay on Population Regulation and Speciation. University of Washington Press, Seattle.
56. Smith PJ (1986) Genetic similarity between samples of the orange roughy Hoplostethus atlanticus from the Tasman Sea, South-west Pacific Ocean and North-east Atlantic Ocean. Marine Biology, 91, 173-180.
57. Smith PJ, Benson PG, McVeagh SM (1997) A comparison of three genetic methods used for stock discrimination of orange roughy, Hoplostethus atlanticus: allozymes, mitochondrial DNA, and random amplified polymorphic DNA. Fishery Bulletin, United States, 95, 800-811.
58. Sokal RR, Rohlf FJ (1981) Biometry, 2nd edn. WH Freeman, San Francisco.
59. Stahl G (1987) Genetic population structure of Atlantic salmon. In: Population Genetics and Fishery Management (eds Ryman N, Utter U), pp. 121-159. Washington Sea Grant Program, University of Washington Press, Seattle.
60. Stepien CA (1995) Population genetic divergence and geographic patterns from DNA sequences: Examples from marine and freshwater fishes. In: Evolution and the Aquatic Ecosystem: Defining Unique Units in Population Conservation (ed. Nielsen JL), pp. 263-287. American Fisheries Society 17. American Fisheries Society, Bethesda.
61. Stepien CA, Rosenblatt RH (1991) Patterns of gene flow and genetic divergence in the northeastern Pacific clinid fishes, based on allozyme and morphological data. Copeia, 1991, 873-896.
62. Stepien CA, Faber JE (1998) Population genetic structure, phylogeography, and spawning philopatry in walleye (Stizostedion vitreum) from mtDNA control region sequences. Molecular Ecology, 7, 1757-1770.
63. Swofford DL (1998) PAUP (phylogenetic analysis using parsimony)*4.0., version D64 for Macintosh Computers. Sinauer Associates, New York.
64. Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic inference. In: Molecular Systematics, 2nd edn. (eds Hillis DM, Moritz C, Mable BK), pp. 407-514. Sinauer Assoc, Sunderland, Massachusetts.
65. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
66. Toole CL, Markle DF, Donohoe CJ (1997) Settlement timing, distribution, and abundance of Dover sole (Microstomus pacificus) on an outer continental shelf nursery area. Canadian Journal of Fisheries and Aquatic Sciences, 54, 531-542.
67. Vetter RD, Lynn EA, Garza M, Costa AS (1994) Depth zonation and metabolic adaptation in Dover sole, Microstomus pacificus, and other deep-living flatfishes: factors that affect the sole. Marine Biology, 120, 145-159.
68. Victor BC (1986) Delayed metamorphosis with reduced larval growth in a coral reef fish (Thalassoma bifasciatum). Canadian Journal of Fisheries and Aquatic Sciences, 43, 1028-1113.
69. Wilson RR Jr, Waples RS (1984) Electrophoretic and biometric variability in the abyssal grenadier Coryphaenoides armatus of the western North Atlantic. Eastern South Pacific and Eastern North Pacific Oceans. Marine Biology, 80, 227-237.
70. Wyllie JG (1966) Geostrophic flow of the California Current at the surface and at 200 meters. Calcofi (California Cooperative Fisheries Investigations) Atlas no. 4. State of California, Marine Research Committee, La Jolla, California.
71. Yang TH, Lai NC, Graham JB, Somero GN (1992) Respiratory, blood, and heart enzymatic adaptations of Sebastolobus alascanus (Scorpaenidae; Teleostei) to the oxygen minimum zone: a comparative study. Biological Bulletin, 183, 490-499.