PCR-RFLP analysis of the flagellin sequences for identification of Burkholderia pseudomallei and Burkholderia cepacia from clinical isolates

Molecular and Cellular Probes

Volumn 13, Issue 2, 1999, Pages 99-105

  Tungpradabkul, S ^a   Wajanarogana, S ^a   Tunpiboonsak, S ^a   Panyim, S ^a  

^a MAHIDOL UNIVERSITY   (Thailand)

Author keywords

Burkholderia cepacia; Burkholderia pseudomallei; Flagellin sequence; PCR restriction fragment length polymorphism (PCR RFLP) analysis

Indexed keywords

FLAGELLIN; PRIMER DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; BIODIVERSITY; BURKHOLDERIA CEPACIA; BURKHOLDERIA PSEUDOMALLEI; CONTROLLED STUDY; FLAGELLUM; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC MARKER; HUMAN; HUMAN CELL; LABORATORY DIAGNOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT;

BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA PSEUDOMALLEI; NEGIBACTERIA;

EID: 0033120899     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1006/mcpr.1999.0221     Document Type: Article

References (28)

1. Chaowagul, W., White, N. J., Dance, D. A., Wattanagoon, Y., Naigowi, P., Davis, T. M., LooareeSuwan, S. & Pitakwatchara, N. (1989). Melioidosis: A major cause of community-acquired septicemia in northeastern Thailand. Journal of Infectious Diseases 159, 890-9.
2. Govan, J. R. W., Hughes, J. E. & van Damme, P. (1996). Burkholderia cepacia-medical, taxonomic and ecological issues. Journal of Medical Microbiology 45, 395-407.
3. Dejsirilert, S., Butraporn, R., Chiewsilp, D., Kondo, E. & Knai, K (1989). High activity of acid phosphatase of Pseudomonas pseudomallei as a possible attribute relating to its pathogenicity. Japanese Journal of Medical Science and Biology 42, 39-49.
4. Kondo, E., Naigowit, P., Phanichruttiwong, P., Petkanchanapong, W., Chetanachan, P., Thirawattanusuk, N. & Knai, K. (1991). Fatty acid profile and acid phosphatase activity of fresh isolates of Pseudomonas pseudomallei. Japanese Journal of Medical Science and Biology 44, 195-211.
5. Ashdown, L. R. (1992). Rapid differentiation of Pseudomonas pseudomallei from Pseudomonas cepacia. Letter in Applied Microbiology 14, 203-5.
6. Desakorn, V., Smith, M. D., Wuthiekanun, V., Dance, D. A. B., Aucken, H., Suntharasamai, P., Rajchanuwong, A. & White, N. J. (1994). Detection of Pseudomonas pseudomallei antigen in urine for the diagnosis of melioidosis. American Journal of Tropical Medicine and Hygiene 51, 627-33.
7. Trakulsomboon, S., Dance, D. A., Smith, M. D., White, N. J. & Pitt, T. L. (1997). Ribotype differences between clinical and environmental isolates of Burkholderia pseudomallei. Journal of Medical Microbiology 46, 565-70.
8. Dharakul, T., Songsivilai, S., Viriyachitra, S., Luangwedchakarn, V., Tassaneetritap, B. & Chaowagul, W. (1996). Detection of Burkholderia pseudomallei in patients with septicemic melioidosis. Journal of Clinical Microbiology 34, 609-14.
9. Rattanathongkorn, A., Sermswan, R. W. & Wongratanacheewin, S. (1997). Detection of Burkholderia pseudomallei in blood samples using polymerase chain reaction. Molecular and Cellular Probes 11, 25-31.
10. Picken, R. N. (1992). Polymerase chain reaction primers and probes derived from flagellin gene sequences for specific detection of the agents of Lyme disease and North America relapsing fever. Journal of Clinical Microbiology 30, 99-114.
11. Oyofo, B. A. & Rollins, D. M. (1993). Efficacy of filter types for detecting Campylobacter jejuni and Campylobacter coli in environmemtal water samples by polymerase chain reaction. Applied Environmental Microbiology 59, 4090-5.
12. Gray, D. I. & Kroll, R. G. (1995). Polymerase chain reaction amplification of the flaA gene for the rapid identification of Listeria spp. Letter in Applied MiCrobiology 20, 65-8.
13. Penn, C. W. & Euke, C. J. (1992). Bacterial flagellar diversity and significance in pathogenesis. FEMS Microbilogy Letter 100, 331-6.
14. Winstanley, C. & Morgan, J. A. W. (1997). The bacterial flagellin gene as a biomarker for detection population genetics and epidemiological analysis. Microbiology 143, 3071-84.
15. DeShazer, D., Brett, P. J., Carlyon, R. & Woods, D. E. (1997). Mutagenesis of Burkholderia pseudomallei with Tn5-OT185: Isolation of motility mutants and molecular characterization of the flagellin structural gene. Journal of Bacteriology 179, 2116-25.
16. Tungpradabkul, S., Senapin, S. & Panyim, S. (1998). PCR-based method for isolation of flagellin gene in Pseudomonas species. Journal of General and Applied Microbiology 44, 231-4.
17. Winstanley, C., Coulson, M. A., Wepner, B., Morgan, J. A. W. & Hart, C. A. (1996). Flagellin gene and protein variation amongst clinical isolates of Pseudomonas aeruginosa. Microbiology 142, 2145-51.
18. Spangenberg, C., Heuer, T., Burger, C. & Tummler, B. (1996). Genetic diversity of flagellins of Pseudomonas aeruginosa. FEBS Letters 396, 213-7.
19. Yanisch-Perron, C., Vieira, J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-19.
20. nd Ed. United States of America: Cold Spring Harbor Laboratory Press.
21. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proceedings of The National Academy Sciences of The United States of America 74, 5463-7.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-80.
23. Altschul, S. F., Gish, W., Miller, W. Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403-10.
24. Hales, B. A., Morgan, J. A. W., Hart, A. & Winstanley, C. (1998). Variation in flagellin genes and proteins of Burkholderia cepacia. Journal of Bacteriology 180, 1110-8.
25. Joys, T. M. (1985). The covalent structure of the phase-1 flagellar filament protein of Salmonella typhimurium and its comparison with other flagellins. Journal of Biological Chemistry 260, 15758-61.
26. Wei, L. N. & Joys, T. M. (1986). The nucleotide sequence of the H-1r gene of Salmonella rubislaw. Nucleic Acids Research 14, 8227.
27. Kuwajima, G. (1988). Flagellin domain that affects H antigenicity of Escherichia coli K-12. Journal of Bacteriology 170, 485-8.
28. Nuijten, P. J., van Asten, F. J., Gaastra, W. & van der Zeijst, B. A. (1990). Structural and functional analysis of two Campylobacter jejuni flagellin genes. Journal of Biological Chemistry 265, 17798-804.