Expressed sequence tags (ESTs) from desiccated Tortula ruralis identify a large number of novel plant genes

Plant and Cell Physiology

Volumn 40, Issue 4, 1999, Pages 361-368

  Wood, Andrew J ^a   Duff, R Joel ^a   Oliver, Melvin J ^b  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

^b Cropping Syst Research Laboratory   (United States)

Author keywords

Bryophyte; Desiccation; DNA sequencing; EST; Moss; Tortula ruralis

Indexed keywords

CDNA LIBRARY; DESICCATION; EXPRESSED SEQUENCE TAG; PLANT GENETICS; STRESS TOLERANCE;

BRYOPHYTA; BRYOPHYTES; DICOTYLEDONEAE; EMBRYOPHYTA; TORTULA RURALIS; TRACHEOPHYTA;

EID: 0033118578     PISSN: 00320781     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.pcp.a029551     Document Type: Article

References (45)

1. Adams, M.D., Dubnick, M., Kerlavage, A.R., Moreno, R., Kelley, J.M., Utterback, T.R., Nagle, J.W., Fields, C. and Venter, J.C. (1992) Sequence identification of 2,375 human brain genes. Nature 355: 632-634.
2. Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie and Venter, J.C. (1991) Complementary DNA sequencing: Expressed Sequence Tags and Human Genome Project. Science. 252: 1651-1656.
3. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
4. Baker, J.C., Steele, C. and Dure, L. III (1988) Sequence and characterization of 6 Lea proteins and their genes from cotton. Plant Mol. Biol. 11:277-291.
5. Bartels, D., Hanke, C., Schneider, K., Michel, D. and Salamini, F. (1992) A desiccation-related Elip-like gene from the resurrection plant Craterostigma plantagineum is regulated by light and ABA. EMBO J. 11: 2771-2778.
6. Bewley, J.D. (1979) Physiological aspects of desiccation-tolerance. Annu. Rev. Plant Physiol. 30: 195-238.
7. Bewley, J.D. (1995) Physiological aspects of desiccation tolerance - a retrospective. Int. J. Plant Sci. 156: 393-403.
8. Bewley, J.D. and Oliver, M.J. (1992) Desiccation tolerance in vegetative plant tissues and seeds: protein synthesis in relation to desiccation and a potential role for protection and repair mechanisms. In Water and Life. Edited by Somero, G.N., Osmond, C.B. and Bolis, C.L. pp. 141-160. Springer-Verlag, New York.
9. Bockel, C., Salamini, F. and Bartels, D. (1998) Isolation and characterization of genes expressed during early events of the dehydration process in the resurrection plant Craterostigma plantagineum. J. Plant Physiol. 152: 158-166.
10. Boguski, M.S. (1995) The turning point in genome research. Trends Biochem. Sci. 20: 295-296.
11. Browning, K.S. (1996) The plant translational apparatus. Plant Mol. Biol. 32: 107-144.
12. Cooke, R., Raynal, M., Laudie, M., Grellet, F., Delsney, M., Morris, P.C., Guerrier, D., Giradaut, J., Quigley, F., Clabault, G., Li, Y.F., Mache, R., Krivitsky, M., Jean Jaques, G.I., Kreis, M., Lecharny, A., Parmentier, Y., Marbach, J., Fleck, J., Clement, B., Philipps, G., Herve, C., Bardet, C., Tremsayague, D., Lescure, B., Lacomme, C., Roby, D., Jourjon, M.F., Charbier, P., Charpenteau, J.-L., Desprez, T., Anselm, J., Chiapello, H. and Hofte, H. (1995) Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J. 9: 101-124.
13. Davidson, E.H. (1986) Gene Activity in Early Development. Academic Press, New York.
14. Duff, R.J. and Nickrent, D.L. (1999) Phylogenetic relationships of land plants using mitochondrial small-subunit rDNA sequences. Amer. J. Bot. (in press).
15. Dure, L. III (1993) A repeating 11-mer amino acid motif and plant desiccation. Plant J. 3: 363-369.
16. Gallie, D.R. (1993) Posttranscriptional regulation of gene expression in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 44: 77-105.
17. Hofte, H., Desprez, T., Amselm, J., Chiapello, H., Caboche, M., Moisan, A., Jourdan, M.F., Charpentou, J.L., Berthomieu, P., Guerrier, D., Giraduat, J., Quigley, F., Thomas, F., Yu, D.Y., Mache, R., Raynal, M., Cooke, R., Grellet, E., Delseney, M., Parmentier, Y., Marcillac, G., Gigot, C., Fleck, J., Phillips, G., Axelos, M., Bardet, C., Tremousaygue, D. and Lescure, B. (1993) An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J. 4: 1051-1061.
18. Ingram, J. and Bartels, D. (1996) The molecular basis of dehydration tolerance in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 377-403.
19. Keith, C.S., Hoang, D.O., Barret, B.M., Freigelman, B., Nelson, M.C., Thai, H. and Baysdorfer, C. (1993) Partial sequence analysis of 130 randomly selected maize cDNA clones. Plant Physiol. 101: 329-332.
20. Kim, H.U., Yun, C.H., Park, B.S., Ryu, J.C. and Chung, T.Y. (1995) Nucleotide sequence of a cDNA clone encoding the complete precursor for the '10-kilodalton' polypeptide of photosystem II from Chinese cabbage. Plant Physiol. 108: 867.
21. Lautner, A., Klein, R., Ljungberg, U., Reilaender, H., Bartling, D., Andersson, B., Reinke, H., Beyreuther, K. and Herrmann, R.G. (1988) Nucleotide sequence of cDNA-clones encoding the complete precursor for the '10 kDa' polypeptide of photosystem II from spinach. J. Biol. Chem. 263: 10077-10081.
22. Liu, J., Hara, C., Umeda, M., Zhao, Y., Okta, T.W. and Uchimiya, H. (1995) Analysis of randomly isolated cDNAs from developing endosperm of rice (Oryza sativa L.); evaluation of expressed sequence tags and expression levels of mRNAs. Plant Mol. Biol. 29: 685-689.
23. McKnight, S.L., Oliver, M.J. and Putnam-Evans, C.L. (1997) Nucleotide sequence of a full-length cDNA (Accession No. U82087) encoding a calmodulin-like domain protein kinase (CDPK) from the moss Tortula ruralis (PGR97-123). Plant Physiol. 115: 313.
24. Murray, E.E., Lotzer, J. and Eberle, M. (1989) Codon usage in plant genes. Nucl. Acid Res. 17: 447-498.
25. Newman, T., de Bruin, F.J., Green, P., Keegstra, K., Kende, H., McIntosh, L., Ohlrogge, J., Raikhel, N., Somerville, S., Thomashow, M., Retzel, E. and Somerville, C. (1994) Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106: 1241-1255.
26. Oliver, M.J. (1991) Influence of protoplasmic water loss on the control of protein synthesis in the desiccation-tolerant moss Tortula ruralis: ramifications for a repair-based mechanism of desiccation-tolerance. Plant Physiol. 97: 1501-1511.
27. Oliver, M.J. and Bewley, J.D. (1984) Plant desiccation and protein synthesis. IV. RNA synthesis, stability, and recruitment of RNA into protein synthesis upon rehydration of the desiccation-tolerant moss Tortula ruralis. Plant Physiol. 74: 21-25.
28. Oliver, M.J. and Bewley, J.D. (1997) Desiccation-tolerance of plant tissues: a mechanistic overview. Hort. Rev. 18: 171-212.
29. Oliver, M.J. and Wood, A.J. (1997) Desiccation-tolerance of mosses. In Stress-Inducible Processes in Higher Eukaryotic Cells. Edited by Koval, T. pp. 1-26. Plenum Publishing Corp, New York.
30. Oliver, M.J., Wood, A.J. and O'Mahony, P. (1997) How some plants recover from vegetative desiccation: a repair based strategy. Acta Physiol. Plant. 19: 419-425.
31. Oliver, M.J., Wood, A.J. and O'Mahony, P. (1998) "To dryness and beyond" - Preparation for the dried state and rehydration in vegetative desiccation-tolerant plants. Plant Growth Reg. 24: 193-201.
32. Piatkowski, D., Schneider, K., Salamini, F. and Bartels, D. (1990) Characterization of five abscisic acid-responsive cDNA clones isolated from the desiccation-tolerant plant Craterostigma plantagineum and their relationship to other water-stress genes. Plant Physiol. 94: 1682-1688.
33. Pearson, W.R. (1991) Identifying distantly related protein sequences. Cur. Opin. Struc. Biol. 1: 321-326.
34. Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 86: 2444-2448.
35. Perera, I.Y., Li, X. and Sze, H. (1995) Several distinct genes encode nearly identical to 16 kDa proteolipids of the vacuolar H(+)-ATPase from Arabidopsis thaliana. Plant Mol. Biol. 29: 227-244.
36. Pramanik, S.K., Krochko, J.E. and Bewley, J.D. (1992) Distribution of cytosolic mRNAs between polysomal and ribonucleoprotein complex fractions in alfalfa embryos. Plant Physiol. 99: 1590-1596.
37. Reski, R., Reynolds, S., Wehe, M., Kleberjanke, T. and Kruse, S. (1998) Moss (Physcomitrella patens) expressed sequence tags include several sequences which are novel for plants. Bot. Acta. 111: 143-149.
38. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Press, Cold Spring Harbor, NY.
39. Sanger, F. (1981) Determination of nucleotide sequences in DNA. Science 214: 1205-1210.
40. Sasaki, T., Song, J., Koga-Ban, Y., Matsui, E., Fang, F., Higo, F., Nagasaki, H., Hori, M., Miya, M., Murayama-Kayano, E., Takiguchi, T., Takasuga, A., Niki, T., Ishimaru, K., Ikeda, H., Yamamoto, Y., Mukai, Y., Ohta, I., Miyadera, N., Havukkula, I. and Minobe, Y. (1994) Toward cataloguing all rice genes; large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J. 6:615-624.
41. Scott, H.B. II and Oliver, M.J. (1994) Accumulation and polysomal recruitment of transcripts in response to desiccation and rehydration of the moss Tortula ruralis. J. Expt. Bot. 45: 577-583.
42. Shen, B., Carneiro, N., Torres-Jerez, I., Stevenson, B., McCreery, T., Helentjaris, T., Baysdorfer, C., Almira, E., Ferl, R.J., Habben, J.E. and Larkins, B. (1994) Partial sequencing and mapping of clones from two maize cDNA libraries. Plant Mol. Biol. 26: 1085-1101.
43. Short, J.M., Fernandez, J.M., Sorge, J.A. and Huse, W.D. (1988) AZAP: a bacteriophage expression vector with in vivo excision properties. Nucl. Acid Res. 16:7583-7600.
44. Spirin, A.S., Belitsina, N.V. and Ajtkhozhin, M.A. (1964) Messenger RNA in early embryogenesis. Zh. Obshch. Biol. 25: 321-338.
45. Taiz, L. (1992) The plant vacoule. J. Exp. Biol. 172: 113-122.