Moss (Physcomitrella patens) expressed sequence tags include several sequences which are novel for plants

Botanica Acta

Volumn 111, Issue 2, 1998, Pages 143-149

  Reski, R ^a   Reynolds, Susan ^b   Wehe, M ^c   Kleber Janke, Tamara ^d   Kruse, S ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b UNIVERSITY OF LAUSANNE   (Switzerland)

^c Chiron Behring GmbH & Co   (Germany)

^d RESEARCH CENTER BORSTEL   (Germany)

Author keywords

Bryophyte; Codon usage; Cytokinin; Expressed sequence tags; Homologous recombination; Seedless plant

Indexed keywords

COMPLEMENTARY DNA; DNA RECOMBINATION; EXPRESSED SEQUENCE TAG; GENE DISRUPTION; GENE SEQUENCING; PLANT GENETICS;

PHYSCOMITRELLA PATENS;

EID: 0031972048     PISSN: 09328629     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1438-8677.1998.tb00689.x     Document Type: Article

References (35)

1. Abel, W. O., Knebel, W., Knoop, H.-U., Marienfeld, J. R., Quader, H., Reski, R., Schnepf, E., and Spörlein, B. - A cytokinin-sensitive mutant of the moss, Physcomitrella patens, defective in chloroplast division. Protoplasma 152 (1989), 1-13.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. - Basic local alignment search tool. J. Mol. Biol. 215 (1990), 403-410.
3. Capecchi, M. R. - The new mouse genetics: altering the genome by gene targeting. TIG 5 (1989), 70-76.
4. Cooke, R., Raynal, M., Laudié, M., Grellet, F., Delseny, M., Morris, P.-C., Guerrier, D., Giraudat, J., Quigley, F., Clabault, G., Li, Y.-L., Mache, R., Krivitzky, M., Gy, I., Kreis, M., Lecharny, A., Parmentier, Y., Marbach, J., Fleck, J., Clément, B., Philipps, G., Hervé, C., Bardet, C., Tremousaygue, D., Lescure, B., Lacomme, C., Roby, D., Jourjon, M.-F., Chabrier, P., Charpenteau, J.-L., Desprez, T., Amselem, J., Chiapello, H., and Höfte, H. - Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J. 9 (1996), 101-124.
5. Cove, D. J. - Regulation of development in the moss Physcomitrella patens. In S. Brody, D. J. Cove, S. Ottolenghi, V. E. A. Russo, eds., Development. The Molecular Genetic Approach, pp 179-193. Springer Verlag, Heidelberg, 1992.
6. Cramaton, S. E. and Laski, F. A. - String of pearls encodes Drosophila ribosomal protein S2, has minute-like characteristics, and is required during oogenesis. Genetics 137 (1994), 1039-1048.
7. Crowell, N. C. and Amasino, R. M. - Cytokinins and plant gene regulation. In D. W. S. Mok, M. C. Mok, eds., Cytokinins. Chemistry, activity and function, pp 233-242. CRC Press, Boca Raton, Ann Arbor, London, Tokyo, 1994.
8. Devereux, J., Haeberli, P., and Smithies, O. - A comprehensive set of sequence analysis programmes for the VAX. Nucl. Acids Res. 12 (1984), 387-395.
9. Höfte, H., Desprez, T., Armselem, J., Chiapello, H., Caboche, M., Moisan, A., Jourjon, M.-F., Charpenteau, J.-L., Berthomieu, P., Guerrier, D., Giraudat, J., Quigley, F., Thomas, F., Yu, D.-Y., Mache, R., Raynal, M., Cooke, R., Greller, F., Delseny, M., Parmentier, Y., de Marcillac, G., Gigot, C., Fleck, J., Philipps, G., Axelos, M., Bardet, C., Tremousaygue, D., and Lescure, B. - An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana, Plant J. 4 (1993), 1051-1061.
10. Jansson, S., Pichersky, E., Bassi, B., Green, B. R., Ikeuchi, M., Melis, A., Simpson, D. J., Spangfort, M., Staehelin, L. A., and Thornber, J. P. - A nomenclature for the genes encoding the chlorophyll a/b-binding proteins of higher plants. Plant Mol. Biol. Rep. 10 (1992), 242-253.
11. Kasten, B., Wehe, M., Reski, R., and Abel, W. O. - trnR-CCG is not unique to the plastid DNA of the liverwort Marchanria: gene identification from the moss Physcomitrella patens. Nucl. Acids Res. 19 (1991), 5074.
12. Kasten, B., Wehe, M., Kruse, S., Reutter, K., Abel, W. O., and Reski, R. - The plastome-encoded zfpA gene of a moss contains procaryotic as well as eucaryotic promoter consensus sequences and its RNA abundance is modulated by cytokinin. Curr. Genet. 22 (1992), 327-333.
13. Kasten, B., Buck, F., Nuske, J., and Reski, R. - Cytokinin affects nuclear- and plastome-encoded energy-converting plastid enzymes. Planta 201 (1997), 261-272.
14. Keith, C. S., Hoang, D. O., Barrett, B. M., Feigelman, B., Nelson, M. C., Thai, H., and Baysdorfer, C. - Partial sequences analysis of 130 randomly selected maize cDNA clones. Plant Physiol. 101 (1993), 329-332.
15. Kongsuwan, K., Yu, Q., Vincent, A., Frisardi, M. C., Rosbash Lengyel, J. A., and Merriam, J. - A Drosophila minute gene encodes a ribosomal protein. Nature 317 (1985), 555-558.
16. Kranz, E. and Dresselhaus, T. - In vitro fertilisation with isolated plant gametes. TIPS 1 (1996), 82-89.
17. Kruse, S., Quast, S., Ipsen, A., Reutter, K., and Reski, R. - Cytokinin affects stability of complex plastid transcripts in cytokinin-sensitive moss mutants. Plant Sci. 112 (1995), 187-196.
18. Marienfeld, J. R., Reski, R., and Abel, W. O. - The first analysed archegoniate mitochondrial gene (COX3) exhibits extraordinary features. Curr. Genet. 20 (1991), 319-329.
19. Murray, E. E., Lotzer, J., and Eberle, M. - Codon usage in plant genes. Nucl. Acids Res. 17 (1989), 477-498.
20. Newman, T., de Bruijn, F. J., Green, P., Keegstra, K., Kende, H., McIntosh, L., Ohlrogge, J., Raikhel, N., Somerville, S., Thomashow, M., Retzel, E., and Somerville, C. - Genes Galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiology 106 (1994), 1241-1255.
21. Park, Y. S., Kwak, J. M., Kwon, O.-Y., Kim, Y. S., Lee, D. S., Cho, M. J., Lee, H. H., and Nam, H. G. - Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing. Plant Physiol. 103 (1993), 359-370.
22. Puchta, H., Dujon, B., and Hohn, B. - Two different but related mechanisms are used in plants for the repair of genomic double strand breaks by homologous recombination. Proc. Natl. Acad. Sci. USA 93 (1996), 5055-5060.
23. Reski, R. - Plastid genes and chloroplast biogenesis. In D. W. S. Mok, M. C. Mok, eds., Cytokinins. Chemistry, activity and function, pp 179-195. CRC Press, Boca Raton, Ann Arbor, London, Tokyo, 1994.
24. Reski, R. - Development, genetics and molecular biology of mosses. Botanica Acta 111 (1998), 1-15.
25. Reski, R., Wehe, M., Hadeler, B., Marienfeld, J. R., and Abel, W. O. - Cytokinin and light quality interact at the molecular level in the chloroplast-mutant PC22 of the moss Physcomitrella. J. Plant Physiol. 138 (1991), 236-243.
26. Reski, R., Faust, M., Wang, X.-H., Wehe, M., and Abel, W. O. - Genome analysis of the moss Physcomitrella patens (Hedw.) B.S.G. Mol. Gen. Genet. 244 (1994), 352-359.
27. Rubenstein, J. L. R., Elizabeth, A., Brice, J., Ciaranello, R. D., Denney, D., Porteus, M. H., and Usdin, T. B. - Subtractive hybridisation system using single-stranded phagemids with directional inserts. Nucl. Acids Res. 18 (1990), 4833-4842.
28. Sambrook, J., Fritsch, E. F., and Maniatis, T. - Molecular cloning: A laboratory manual, ed 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
29. Schaefer, D. G. and Zryd, J.-P. - Efficient gene targeting in the moss Physcomitrella patens. Plant J. 11 (1997), 1195-1206.
30. Schweinfest, W. O., Henderson, K. W., Gu, J. R., Kottaridis, S. D., Besbeas, S., Panotopoulou, E., and Papas, T. S.- Subtraction hybridisation cDNA libraries from colon carcinoma and hepatic cancer. Genet. Anal.Techn. Appl. 7 (1990), 64-70.
31. Strepp, R., Scholz, S., Kruse, S., V. Speth, R. Reski - Plant nuclear gene knockout reveals a role in plastid divison for the homologue of the bacterial cell division protein FtsZ, an ancestral tubulin. Proc. Natl. Acad. Sci. USA (1998) in press.
32. Struhl, K. - The new yeast genetics. Nature 305 (1983), 391-397.
33. Tsugeki, R., Kochieva, E. Z., and Fedoroff, N. V. - A transposon insertion in the Arobidopsis SSR16 gene causes an embryo-defective lethal mutation. Plant J. 10 (1996), 479-489.
34. Uchimiya, H., Kidou, S., Shimazaki, T., Aotsuka, S., Takamatsu, S., Nishi, R., Hashimoto, H., Matsubayashi, Y., Kidou, N., Umeda, M., and Kato, A. - Random sequencing of cDNA libraries reveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.), Plant J. 2 (1992), 1005-1009.
35. van Lijsebettens, M., Vanderhaeghen, R., de Block, M., Bauw, G., Villarroel, R., and van Montagu, M. - An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems. EMBO J. 13 (1994), 3378-3388.