Internal Transcribed Spacer Sequence Phylogeny ofCrambeL. (Brassicaceae): Molecular Data Reveal Two Old World Disjunctions

Molecular Phylogenetics and Evolution

Volumn 11, Issue 3, 1999, Pages 361-380

  Francisco Ortega, Javier ^a   Fuertes Aguilar, Javier ^b   Gómez Campo, César ^c   Santos Guerra, Arnoldo ^d   Jansen, Robert K ^e  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b CSIC   (Spain)

^c Clin Hosp Cd Universitaria S n   (Spain)

^d Jardin de Aclimatacion de la Orotava   (Spain)

^e UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRASSICACEAE; MACARONESIA;

PLANT DNA; RIBOSOME DNA;

ARTICLE; BRASSICA; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

BASE COMPOSITION; BASE SEQUENCE; BRASSICA; DNA, PLANT; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; VARIATION (GENETICS);

EID: 0033113767     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1998.0592     Document Type: Article

References (106)

1. Aguinagalde I., Gómez-Campo C. The phylogenetic significance of flavonoids inCrambe. Bot. J. Linn. Soc. 89:1984;277-288.
2. Al-Shehbaz I. A. The tribes of Cruciferae (Brassicaceae) in southern United States. J. Arnold Arbor. 65:1984;343-373.
3. Al-Shehbaz I. A. The genera of Anchonieae (Hesperidae) (Cruciferae; Brassicaceae) in the southeastern United States. J. Arnold Arbor. 69:1988;192-212.
4. Anderson V. L., Slanger W. D., Boyles S. L., Berg P. T. Crambe. J. Anim. Sci. 71:1993;2608-2613.
5. Axelrod D. I. History of the Mediterranean ecosystem in California. Mediterranean Type Ecosystems: Origin and Structure. 1973;Springer-Verlag, Berlin. p. 225-277.
6. Axelrod D. I. Evolution and biogeography of Madrean-Tethyan sclerophyll vegetation. Ann. Missouri Bot. Gard. 62:1975;280-334.
7. Axelrod D. I., Raven P. H. Late Cretaceous and Tertiary vegetation history of Africa. Werger M. J. A. Biogeography and Ecology of Southern Africa. 1978;77-130 Junk, The Hague.
8. Ball P. W. Crambe. Tutin T. G., Heywood V. H., Burges N. A., Valentine D. H., Walters S. M., Webb D. A. Flora Europaea. 1964;344-345 Cambridge Univ. Press, Cambridge.
9. Boufford D. E., Spongberg S. A. Eastern Asian-eastern North American phytogeographic relationships - A history from the time of Linnaeus to the twentieth century. Ann. Missouri Bot. Gard. 70:1983;423-439.
10. Bramwell D. The genusCrambe. Cuad. Bot. Canaria. 6:1969;5-12.
11. Bramwell D. Contribución a la biogeografía de las Islas Canarias. Bot. Macaroné 14:1985;3-34.
12. Bramwell D. A new name forCrambe gigantea. Bot. Macaroné 22:1995;111.
13. Bremer K. Intercontinental relationships of Africa and South American Asteraceae: A cladistic biogeographic analysis. Goldblatt P. Biological Relationships between Africa and South America. 1993;105-135 Yale Univ. Press, New Haven.
14. Burtt B. L. From the south: An African view of the floras of western Asia. Davis P. H., Harper P. C., Hedge I. C. Plant Life of South-West Asia. 1971;135-149 Bot. Soc. Edinburgh, Edinburgh.
15. de Candolle A. P. Regni Vegetabilis Systema Naturale. 1821;Treuttel and Wurtz, Paris.
16. de Candolle A. P. Prodromus Systematis Naturalis Regni Vegetabilis. 1824;Treuttel and Wurtz, Strasbourg and London.
17. Carlquist S. Island Life: A Natural History of the Islands of the World. 1965;Natural History Press, New York.
18. Chernyakovskaya E. G. Crambe. Komarov V. L., Bush N. A. Flora of the U.S.S.R. 1970;354-366 Israel Program for Scientific Translations, Jerusalem.
19. Clemente M., Hernández-Bermejo E. El aparato nectarígeno de la tribu Brassiceae (Cruciferae). Anales Inst. Bot. Cavanilles. 35:1978a;279-296.
20. Clemente M., Hernández-Bermejo E. La corola de la tribu Brassiceae. Anales Inst. Bot. Cavanilles. 35:1978b;297-334.
21. Clemente M., Hernández-Bermejo E. El cáliz de la tribu Brassiceae (Cruciferae). Anales Jard. Bot. Madrid. 36:1980a;77-96.
22. Clemente M., Hernández-Bermejo E. Clasificación jerárquica de las Brasiceas según caracteres de las piezas estériles de su flor. Anales Jard. Bot. Madrid. 36:1980b;97-113.
23. Coetzee J. A. African flora since the terminal Jurassic. Goldblatt P. Biological Relationships between Africa and South America. 1993;37-61 Yale Univ Press, New Haven.
24. Constance L., Heckard R., Chambers K. L., Ornduff R., Raven P. H. Amphitropical relationships in the herbaceous flora of the Pacific coast of North and South America: A symposium. Q. Rev. Biol. 38:1963;109-177.
25. Czerepanov S. K. Vascular Plants of Russia and Adjacent States (the Former USSR). 1995;Cambridge Univ. Press, Cambridge.
26. Demissew S. The genusThymus. Opera Bot. 121:1993;57-60.
27. Downie S. R., Katz-Downie D. S. A molecular phylogeny of Apiaceae subfamily Apioideae: Evidence from nuclear ribosomal DNA internal transcribed sequences. Am. J. Bot. 83:1996;234-251.
28. Doyle J. J., Doyle J. L. A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochem. Bull. 19:1987;11-15.
29. Elenga H., Schwartz, Vincens A. Pollen evidence of late Quaternary vegetation and inferred climate changes in Congo. Palaeogeogr. Palaeoclimatol. Palaeoecol. 109:1994;345-356.
30. Farris J. S. The retention index and homoplasy excess. Syst. Zool. 38:1989;406-407.
31. Felsenstein J. Confidence limits on phylogenies: An approach using bootstrap. Evolution. 39:1985;783-791.
32. Felsenstein, J. 1993, PHYLIP (Phylogeny Inference Package), Department of Genetics, Univ. of Washington, Seattle.
33. Gómez-Campo C. Morphology and morpho-taxonomy of the tribe Brassiceae. Tsunoda S., Hinata K., Gómez-Campo C. Brassica. 1980;3-30 Japan Sci. Press, Tokyo.
34. th. 1993;573-578 OPTIMA, Istanbul.
35. Gómez-Campo C., Hinata K. A check list of chromosome numbers in the tribe Brassiceae. Tsunoda S., Hinata K., Gómez-Campo C. Brassica. 1980;51-63 Japan Sci. Press, Tokyo.
36. Gómez-Campo C., Tortosa M. E. The taxonomic and evolutionary significance of some juvenile characters in the Brassiceae. Bot. J. Linn. Soc. 69:1974;105-124.
37. Hamilton A. The history of the vegetation. Lind E. M., Morrison M. E. S. East African Vegetation. 1974;188-209 Longman, London.
38. Hedberg O. Afroalpine flora elements. Webbia. 19:1965;519-529.
39. Higgins D. G., Bleasby A. J., Fuchs R. CLUSTAL V: Improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:1991;189-191.
40. Hillis D. M., Huelsenbeck J. P. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:1992;189-195.
41. Holmgren P. K., Holmgren N. H., Barnett L. C. Index herbariorum. Part 1: The herbaria of the world. Regnum Veg. 120:1990;1-693.
42. Jalas J., Suominen J., Lampinen R. Cruciferae (RicotiaRaphanus. 1996;Committee for Mapping the Flora of Europe and Societas Biologica Fennica Vanamo, Helsinki.
43. Jonsell B. Cruciferae. Polhill R. M. Flora of Tropical East Africa. 1982;1-75 Balkema, Rotterdam.
44. Khalilov I. I. The system of the genusCrambe. Bot. Zhurn. (St. Petersburg). 76:1991a;1612-1613.
45. Khalilov I. I. GenerisCrambe. Novosti Sist. Vyssh. Rast. 28:1991b;78-79.
46. Khalilov I. I., Archangelsky D. B. Palynological studies in the species of the genusCrambe. Bot. Zhurn. (St. Petersburg). 76:1991;1582-1586.
47. Kim K.-J., Jansen R. K. Comparisons of phylogenetic hypothesis among different data sets in dwarf dandelions (Krigia. Plant Syst. Evol. 190:1994;157-185.
48. Kimura M. A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
49. Kitamura S. Flora of Afghanistan. 1960;Kyoto Univ. Kyoto.
50. Kluge A. G., Farris J. S. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1969;1-32.
51. Koeniger J. C. Gisements fossiliferes continentaux, Paleographie et apysages forestiers en Europe Occidentale et dans le Nord de l'Afrique au Cenozoique Superieur. Biogeographica. 69:1992;135-155.
52. Kohne D. E. Evolution of higher organism DNA. Q. Rev. Biophys. 33:1970;327-375.
53. Kumar, S. Koichiro, T. Nei, M. 1993, MEGA: Molecular Evolutionary Genetics Analysis, Pennsylvania State University, University Park, PA.
54. Lazzeri L., Leoni O., Conte L. S., Palmieri S. Some technological characteristics and potential uses ofCrambe abyssinica. Industr. Crops Products. 3:1994;103-112.
55. Lessman K. J., Meier V. D. Agronomic evaluation ofCrambe. Crop Sci. 12:1972;224-227.
56. Li W.-H. Molecular Evolution. 1997;Sinauer, Sunderland.
57. Li W.-H., Graur D. Fundamentals of Molecular Evolution. 1991;Sinauer, Sunderland.
58. Li W.-H., Tanimura M. The molecular clock runs more slowly in man than in apes and monkeys. Nature. 326:1987;93-96.
59. Loockerman D. J., Jansen R. K. The use of herbarium material for DNA studies. Stuessy T. F., Sohmer S. H. Sampling the Green World. 1996;205-220 Columbia Univ. Press, New York.
60. Lovett J. C. Temperate and tropical floras in the mountains of eastern Tanzania. Opera Bot. 121:1993;217-227.
61. Maddison D. R. The discovery and importance of multiple islands of most parsimonious trees. Syst. Zool. 40:1991;315-328.
62. Maddison, W. P. Maddison, D. R. 1992, MacClade, Sinauer, Sunderland.
63. Magulaev A. J. Chromosome numbers in some species of flowering plants of the Crimea and Caucasus floras. Bot. Zhurn. (St. Petersburg). 71:1986;1575-1578.
64. Meikle R. D. Flora of Cyprus. 1977;Royal Botanic Gardens, Kew.
65. Mouterde P. Nouvelle Flore du Liban et de la Syrie. 1986;Dar El-Machreq, Beirut.
66. Mulder J. H., Mastebroek H. D. Variation for agronomic characteristics inCrambe hispanica,Crambe abyssinica. Euphytica. 89:1996;267-278.
67. Nieschlag H. J., Wolff I. A. Industrial uses of high erucic oils. J. Am. Oil Chem. Soc. 48:1971;723-727.
68. Olmstead R. G., Palmer J. D. Implications for the phylogeny, classification, and biogeography ofSolanum. Syst. Bot. 22:1997;19-29.
69. Parks C. R., Wendel J. F. Molecular divergence between Asian and North American species ofLiriodendron. Am. J. Bot. 77:1990;1243-1256.
70. Post G. E. Flora of Syria, Palestine, and Sinai. 1932;American Press, Beirut.
71. Potts R., Behrensmeyer A. K. Late Cenozoic terrestrial ecosystems. Behrensmeyer A. K., Damuth J. D., DiMichele W. A., Potts R., Sues H.-D., Wing S. L. Terrestrial Ecosystems through Time: Evolutionary Paleoecology of Terrestrial Plants and Animals. 1992;419-541 Univ. of Chicago Press, Chicago.
72. Quézel P. Analysis of the flora of Mediterranean and Saharan Africa. Ann. Missouri Bot. Gard. 65:1978;280-334.
73. Quézel P. Definition of the Mediterranean region and the origin of its flora. Gómez-Campo C. Plant Conservation in the Mediterranean Area. 1985;9-24 Junk, Dordrecht.
74. Rathgeberg J., Capesius I. Nucleotide sequence of the 18S-25S spacer region from mustard DNA. Nucleic Acids Res. 17:1989;7522.
75. Rieseberg L. H., Soltis D. E. Phylogenetic consequences of cytoplasmic gene flow in plants. Evol. Trends Pl. 5:1991;65-84.
76. Rieseberg L. H., Whitton J., Linder C. R. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Bot. Neerl. 45:1996;243-262.
77. Robyns W., Boutique R. Cruciferae. Comité exécutif de la flore du Congo Belge et Jardin Botanique de l'état. Flore du Congo Belge et du Ruanda-Urundi. 1951;522-543 Publications de L'Institut National pour L'Etude Agronomique du Congo Belge, Brussels.
78. Rögl F., Steininger F. F. Neogene Paratethys, Mediterranean and Indo-Pacific seaways. Brenchley P. Fossils and Climate. 1984;171-200 Wiley, Chichester.
79. Sang T., Crawford D. J., Kim S.-C., Stuessy T. F. Radiation of the endemic genusDendroseris. Am. J. Bot. 81:1994;1494-1501.
80. Sang T., Crawford D. J., Stuessy T. F. ITS sequences and the phylogeny of the genusRobinsonia. Syst. Bot. 20:1995;55-64.
81. Sang T., Crawford D. J., Stuessy T. F. Chloroplast DNA phylogeny, reticulate evolution, and biogeography ofPaeonia. Am. J. Bot. 81:1997;1494-1501.
82. Santos-Guerra A. Vegetación y Flora de La Palma. 1983;Interinsular Canaria, Santa Cruz de Tenerife.
83. nd. 1996;Universidad de Las Palmas de Gran CanariaDepartamento de Biología, Las Palmas de Gran Canaria. p. 162.
84. Sarich V. M., Wilson A. C. Generation time and genomic evolution in primates. Science. 179:1973;1144-1147.
85. Savard L., Michaud M., Bousquet J. Genetic diversity and phylogenetic relationships between birches and alders using ITS, 18S rRNA, andrbc. Mol. Phylogenet. Evol. 2:1993;112-118.
86. Schulz O. E. Cruciferae - Brassiceae. Pars prima. Subtribus I. Brassicinae et II. Raphaniae. Engler A. Das Pflanzenreich Regni Vegetabilis Conspectus. 1919;1-290 Verlag von Wilhelm Engelmann, Leipzig.
87. Street F. A. Tropical palaeoenvironments. Progr. Phys. Geogr. 5:1981;157-185.
88. Suh Y., Thien L. B., Reeve H. E., Zimmer E. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. Am. J. Bot. 80:1993;1042-1055.
89. Sunding P. Origins of the Macaronesian flora. Bramwell D. Plants and Islands. 1979;13-40 Academic Press, London.
90. Swofford, D. L. 1993, PAUP: Phylogenetic Analysis Using Parsimony, Illinois Natural History Survey, Champaign, IL.
91. Thorne R. F. Major disjunctions in the geographic ranges of seed plants. Q. Rev. Biol. 47:1972;365-411.
92. Van Dyne D. L., Blase M. G. Commercializing high erucic acid oil crops. Trans. Missouri Acad. Sci. 23:1989;13-22.
93. Vargas P., Baldwin B. G., Constance L. Nuclear ribosomal DNA evidence for a western North America origin of Hawaiian and South American species ofSanicula. Proc. Natl. Acad. Sci. USA. 95:1997;235-240.
94. Warwick S. I., Black L. D., Aguinagalde I. Molecular systematics ofBrassicaDiplotaxis. Theor. Appl. Genet. 83:1992;839-850.
95. Warwick S. I., Black L. D. Molecular relationships in tribe Brassicinae (Cruciferae, tribe Brassiceae). Can. J. Bot. 71:1993;906-918.
96. Warwick S. I., Black L. D. Molecular phylogenies from theory to application inBrassica. Opera Bot. 132:1997a;159-168.
97. Warwick S. I., Black L. D. Phylogenetic implications of chloroplast DNA restriction site variation in subtribes Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae). Can. J. Bot. 75:1997b;960-973.
98. Warwick S. I., Black L. D. Molecular phylogeny of tribe Brassiceae (Brassicaceae); tribal status ofCalepina, Conringia and Orychophragmus. Am. J. Bot. 84:1997c;243-244.
99. Wen J., Zimmer E. A. Phylogeny and biogeography ofPanax. Mol. Phylogenet. Evol. 6:1996;167-177.
100. Wendel J. F., Schnable A., Seelanan T. An unusual ribosomal DNA sequence fromGossypium gossypioides. Mol. Phylogenet. Evol. 4:1995;298-313.
101. White G. A. Distinguishing characteristics ofCrambe abyssinicaC. hispanica. Crop Sci. 15:1975;91-93.
102. White G. A., Solt M. Chromosome numbers inCrambe, Crambella,Hemicrambe. Crop Sci. 18:1978;160-161.
103. White T. J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols. A Guide to Methods and Applications. 1990;315-322 Academic Press, San Diego.
104. Winship P. R. An improved method for direct sequencing of PCR amplified material using dimethyl sulphoxide. Nucleic Acids Res. 17:1989;1266.
105. Wu C.-I, Li W.-H. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA. 82:1985;1741-1745.
106. Zohary M. Flora Palestina. 1966;The Israel Academy of Sciences and Humanities, Jerusalem.