Origin, genetic diversity, and genome structure of the domestic dog

BioEssays

Volumn 21, Issue 3, 1999, Pages 247-257

  Wayne, Robert K ^a   Ostrander, Elaine A ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOG; EVOLUTION; GENE MAPPING; GENETIC DIVERSITY; MAMMALIAN GENETICS; MITOCHONDRIAL DNA; PHYLOGENY; SEQUENCE ANALYSIS;

ANIMALS; ANIMALS, DOMESTIC; BREEDING; CHROMOSOME MAPPING; DOGS; EVOLUTION; HUMANS; NUCLEIC ACID HYBRIDIZATION; REPETITIVE SEQUENCES, NUCLEIC ACID; VARIATION (GENETICS);

CANIDAE; CANIS; CANIS FAMILIARIS; CANIS LUPUS; MAMMALIA;

EID: 0033104105     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1521-1878(199903)21:3<247::AID-BIES9>3.0.CO;2-Z     Document Type: Conference Paper

References (71)

1. Wurster-Hill DH, Centerwall, WR. The interrelationships of chromosome banding patterns in canids, mustelids, hyena, and felids. Cytogenet Cell Genet 1982;34:178-192.
2. Wayne RK, Nash WG, O'Brien SJ. Chromosomal evolution of the Canidae: II. Divergence from the primitive carnivore karyotype. Cytogenet Cell Genet 1987;44:134-141.
3. O'Brien SJ, Wienberg J, Lyons LA. Comparative genomics: lessons from cats. Trends Genet 1997;13:393-399.
4. Wayne RK. Molecular evolution of the dog family. Trends Genet 1993;9:218-224.
5. Stufflebeam CE. Genetics of domestic animals. New Jersey: Prentice Hall, 1989.
6. Clutton-Brock J. Origins of the dog: domestication and early history. In: Serpell J, editor. The domestic dog, its evolution, behaviour and interactions with people. Cambridge: Cambridge University Press; 1995. p 7-20.
7. Olsen SJ. Origins of the domestic dog. Tucson, Arizona: University of Arizona Press; 1985.
8. Dennis-Bryan K, Clutton-Brock J. Dogs of the last hundred years at the British Museum Natural History. London: British Museum Natural History; 1988.
9. Darwin C. 1871 The descent of man and selection in relation to sex. London: Murray.
10. Lorenz K. Man meets dog. London: Methuen; 1954.
11. Wayne RK, O'Brien SJ. Allozyme divergence within the Canidae. Syst Zool 1987;36:339-355.
12. Ferrell RE, Morizot DC, Horn J, Carley CJ. Biochemical markers in species endangered by introgression: the red wolf. Biochem Genet 1978;18: 39-49.
13. Garcia-Moreno J, Matocq MD, Roy MS, Geffen E, Wayne RK. Relationship and genetic purity of the endangered Mexican wolf based on analysis of microsatellite loci. Conserv Biol 1996;10:376-389.
14. Wayne RK, Lehman N, Allard MW, Honeycutt RL. Mitochondrial DNA variability of the gray wolf: genetic consequences of population decline and habitat fragmentation. Conserv Biol 1992;6:559-569.
15. Gottelli D, Sillero-Zubiri C, Applebaum GD, Roy MS, Girman DJ, Garcia-Moreno J, Ostrander EA, Wayne RK. Molecular genetics of the most endangered canid: the Ethiopian wolf, Canis simensis. Mol Ecol 1994;3: 301-312.
16. Vilà C, Savolainen P, Maldonado JE, Amorim IR, Rice JE, Honeycutt RL, Crandall KA, Lundeberg J, Wayne RK. Multiple and ancient origins of the domestic dog. Science 1997;276:1687-1689.
17. Pferd W III. Dogs of the American Indians. Fairfax, Virginia: Denlinger's Publishers; 1987.
18. Olsen SJ, Olsen JW. The Chinese wolf ancestor of New World dogs. Science 1977;197:533-535.
19. Wayne RK. Cranial morphology of domestic and wild canids: the influence of development on morphological change. Evolution 1986;40:243-261.
20. Vilà C, Wayne RK. Wolf-dog hybridization. Conserv Biol (not yet published).
21. Simonsen V. Electrophoretic studies on blood proteins of domestic dogs and other Canidae. Hereditas 1976;82:7-18.
22. Fredholm M, Wintero AK. Variation of short tandem repeats within and between species belonging to the Canidae family. Anim Genet 1995;6: 11-18.
23. Zajc I, Mellersh CS, Sampson J. Variability of canine microsatellites within and between different dog breeds. Mamm Genome 1997;8:182-185.
24. Hedrick PW, Miller PS, Geffen E, Wayne RK. Genetic evaluation of the three captive Mexican wolf lineages. Zoo Biol 1997;16:47-69.
25. Vilà C, Maldanado J, Wayne RK. Phylogenetic relationships, evolution and genetic diversity of the domestic dog. J Heredity (in press).
26. Gould SJ. The egg-a-day barrier. Nat Hist July 1987.
27. Reimann N, Bartnizte S, Bullerdiek J, Schmilz U, Rogalla P, Nolte I, Ronne M. An extended nomenclature of the canine karyotype. Cytogenet Cell Genet 1996;73:140-144.
28. Switonski M, Reimann N, Bosma AA, Long S, Bartnitzke S, Pienkowska A, Moreno-Milan MM, Fischer P. Report on the progress of standardization of the G-banded canine Canis familiaris) karyotype. Committee for the Standardized Karyotype of the Dog Canis familiaris. Chromosome Res 1996;4:306-309.
29. Langford CF, Fischer PE, Binns MM, Holmes NG, Carter NP. Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chromosome Res 1995;3:1-10.
30. Potapov VA, Solov'ev VV, Romashchenko AG, Sosnovtsev SV, Ivanov SV. Features of the structure and evolution of complex, tandemly organized Bsp-repeats in the fox genome. I. Structure and internal organization of the BamHl-dimer. Mol Biol (Mosk) 1990;24:1649-1665.
31. Modi WS, Fanning TG, Wayne RK, O'Brien SJ. Chromosomal localization of satellite DNA sequences among 22 species of felids and canids Carnivora. Cytogenet Cell Genet 1988;48:208-213.
32. Fanning TG, Modi WS, Wayne RK, O'Brien SJ. Evolution of heterochromatin-associated satellite DNA loci in felids and canids Carnivora. Cytogenet Cell Genet 1988;48:208-213.
33. Fanning TG. Molecular evolution of centromere-associated nucleotide sequences in two species of canids. Gene 1989;85:559-563.
34. Ivanov SV, Potapov VA, Filipenko EA, Romashchenko AG. Heterogeneity of the Canidae Bsp-repeats family: discovery of the EcoRl subfamily. Genetika 1991;27:973-982.
35. Jeffreys AJ, Morton DB. DNA fingerprints of dogs and oats. Anim Genet 1987;18:1-15.
36. Gilbert DA, Lehman N, O'Brien SJ, Wayne RK. Genetic fingerprinting reflects population differentiation in the Channel Island Fox. Nature 1990;344:764-767.
37. Minnick MF, Stillwell LC, Heineman JM, Stiegler GL. A highly repetitive DNA sequence possibly unique to canids. Gene 1992;110:235-238.
38. Ostrander EA, Jong PM, Rine J, Duyk G. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proc Natl Acad Sci USA 1992;89:3419-3423.
39. Rothuizen J, Wolfswinkel J, Lenstra JA, Frants RR. The incidence of mini-and micro-satellite repetitive DNA in the canine genome. Theor Appl Genet 1994;89:403-406.
40. Ostrander EA Jr, Sprague, GF, Rine J. Identification and characterization of dinucleotide repeat CA)n markers for genetic mapping in dog. Genomics 1993;16:207-213.
41. Holmes NG, Mellersh CS, Humphreys SJ, Binns MM, Holliman A, Curtis R, Sampson J. Isolation and characterization of microsatellites from the canine genome. Anim Genet 1993;24:289-292.
42. Holmes NG, Dickens HF, Parker HL, Binns MM, Mellersh CS, Sampson J. Eighteen canine microsatellites. Anim Genet 1995;26:132-133.
43. Ostrander EA, Mapa FA, Yee M, Rine J. One hundred and one simple sequence repeat-based markers for the canine genome. Mamm Genome 1995;6:192-195.
44. Francisco LV, Langston AA, Mellersh CS, Neal CL, Ostrander EA. A class of highly polymorphic tetranucleotide repeats for canine genetic mapping. Mamm Genome 1996;7:359-362.
45. Litt M, Luty JA. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 1989;44:397-401.
46. Weber JL, May PE. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 1989;44:388-396.
47. Roy MS, Geffen E, Smith D, Ostrander E, Wayne RK. Patterns of differentiation and hybridization in North American wolf-like canids revealed by analysis of microsatellite loci. Mol Biol Evol 1994;11:553-570.
48. Mellersh CS, Langston AA, Acland GM, Fleming MA, Ray K, Weigand NA, Francisco LV, Gibbs M, Aguirre GD, Ostrander EA. A linkage map of the canine genome. Genomics 1997;46:317-325.
49. Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, Aguirre GD, Ziegle JS, Ostrander EA, Rine J. A second generation map of the domestic dog. Canis familiaris. Genetics (in press).
50. Ostrander EA, Giniger E. Semper fidelis: what man's best friend can teach us about human biology and disease. Am J Hum Genet 1997;61:475-480.
51. Johnson GS, Turrentine MA, Kraus KH. Canine von Willebrand's disease: a heterogeneous group of bleeding disorders. Vet Clin North Am Small Anim Pract 1988;18:195-229
52. Ray J, Bouvet A, DeSanto, C, Fyfe JC, Xu D, Wolfe JH, Aguirre GD, Patterson DF, Haskins ME, Henthorn PS. Cloning of the canine beta-glucuronidase cDNA, mutation identification in canine MPS VII, and retroviral vector-mediated correction of MPSVII cells. Genomics 1998;48: 248-253.
53. Felsburg PJ, Somberg RL, Hartnett BJ, Henthorn PS, Carding SR. Canine X-linked severe combined immunodeficiency: a model for investigating the requirement for the common gamma chain (gamma c) in human lymphocyte development and function. Immunol Res 1998;17:63-73.
54. Petersen-Jones SM. A review of research to elucidate the causes of the generalized progressive retinal atrophies. Vet J 1998;155:5-18.
55. Clements PJM, Gregory CY, Peterson-Jones SM, Sargan DR, Bhattacharya SS. Confirmation of the rod cGMP phosphodiesterase b (subunit PDEb) nonsense mutation in affected rcd-1 Irish setters in the UK and development of a diagnostic lest. Curr Eye Res 1993;9:861-866.
56. Acland GM, Ray K, Mellersh CS, Weikuan G, Langston AA, Rine J, Ostrander EA, Aguirre GD. Comparative mapping and linkage analysis of canine progressive rod-cone degeneration prcd) establishes locus homology with retinitis pigmentosa RP17) in humans. Proc Natl Acad Sci USA 1998;95:3048-3053.
57. Werner P, Raducha MG, Prociuk U, Henthorn PS, Patterson DF. Physical and linkage mapping of human chromosome 17 loci to dog chromosomes 9 and 5. Genomics 1997;42:74-82.
58. Guevara-Fujita ML, Loechel R, Venta PJ, Yuzbasiyan-Gurkan V, Brewer GJ. Chromosomal assignment of seven genes on canine chromosomes by fluorescence in situ hybridization. Mamm Genome 1996;7:268-270.
59. Dutra AS, Mignot E, Puck JM. Gene localization and syntenic mapping by FISH in the dog. Cytogenet Cell Genet 1996;74: 113-117.
60. Fischer PE, Holmes NG, Dickens HF, Thomas R, Binns MM, Nacheva EP. The application of FISH techniques for physical mapping in the dog Canis familiaris Mamm Genome 1996;7:37-41.
61. Deschenes SM, Puck JM, Dutra AS, Somberg RL, Felsburg PJ, Henthorn PS. Comparative mapping of canine and human proximal Xq and genetic analysis of canine X-linked severe combined immunodeficiency. Genomes 1994;23:62-68.
62. Langston AA, Mellersh CS, Neal CN, Acland GM, Ray K, Gibbs M. Aguirre GD, Fournier REK, Ostrander EA. Construction of a panel of canine rodent hybrid cell lies for use in partitioning of the canine genome. Genomics 1997;46:326-336.
63. Vignaux F, Priat C, Jouquand S, Hitte C, Jiang Z, Cheron A, Renier C, Andre C, Galibert F. Towards a radiation hybird map. J Hered (in press).
64. Priat C, Hitte C, Vignaux F, Renier C, Jiang Z, Jouquand S, Cheron A, Andre C, Galibert F. A whole-genome radiation hybrid map of the dog genome. Genomics (in press).
65. Venta PJ, Brouillette JA, Yuzbasiyan-Gurkan V, Brewer GJ. Gene-specific universal mammalian sequence-tagged sites: application to the canine genome. Biochem Genet 1996;34:321-341
66. O'Brien SJ, Womack JE, Lyons LA, Moore KJ, Jenkins NA, Copeland NG. Anchored reference loci for comparative genome mapping in mammals. Nat Genet 1993;3:103-112.
67. Lyons LA, Laughlin TF, Copeland NG, Jenkins NA, Womack JE, O'Brien SJ. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nat Genet 1997;15:47-56.
68. Li R, Zhao B, Osoegawa K, Catanese J, Henthorn P, Patterson DA, Ostrander EA, van Oost B, Mignot E, de Jong PJ. Preparation and characterization of an eight fold redundant BAC library of the dog genome. Genome mapping and sequencing. Cold Spring Harbor Meeting. New York: Cold Spring Harbor, (submitted).
69. Wayne RK, Benveniste RE, O'Brien SJ. Molecular and biochemical evolution of the Carnivora. In: Gittleman JL, editor. Carnivore behavior, ecology and evolution. Ithaca, New York: Cornell University Press; 1989. p 465-494.
70. Wayne RK, Geffen E, Girman DJ, Koepfli KP, Lau LM, Marshall C. Molecular systematics of the Canidae. Syst Biol 1997;4:622-653.
71. Sheldon JW. Wild dogs. The natural history of the nondomestic canidae. New York: Academic Press; 1992.