Involvement in denitrification of the napkefdabc genes encoding the periplasmic nitrate reductase system in the denitrifying phototrophic bacterium rhodobacter sphaeroides f. Sp

Bioscience, Biotechnology and Biochemistry

Volumn 63, Issue 3, 1999, Pages 530-536

  Liu, Hui Ping ^a   Takio, Susumu ^a,b   Satoh, Toshio ^a   Yamamoto, Isamu ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b KUMAMOTO UNIVERSITY   (Japan)

Author keywords

Denitrification; Napkefdabc; Periplasmic nitrate reductase; Phototrophic bacterium; Rhodobacter sphaeroides f. sp. denitrificans

Indexed keywords

BACTERIAL DNA; NITRATE REDUCTASE;

ARTICLE; BACTERIAL GENE; BACTERIUM CONJUGATION; BIOSYNTHESIS; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR CLONING; MUTATION; PLASMID; RHODOBACTER SPHAEROIDES; TRANSPOSON;

CLONING, MOLECULAR; CONJUGATION, GENETIC; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; GENES, BACTERIAL; MUTATION; NITRATE REDUCTASES; PLASMIDS; RHODOBACTER SPHAEROIDES;

EID: 0033088581     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.63.530     Document Type: Article

References (39)

1. Ferguson, S. J., Denitrification and its control. Antonie Leeuwenhoek, 66, 89-110 (1994).
2. Berks, B. C., Ferguson, S. J., Moir, J. W. B., and Richardson, D. J., Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyan-ions. Biochim. Biophys. Acta, 1232, 97-173 (1995).
3. Zumft, W. G., Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev., 61, 533-616 (1997).
4. Philippot, L., Clays-Josserand, A., Lensi, R., Trinsoutreau, I., Normand, P., and Potier, P., Purification of the dissimilative nitrate reductase of pseudomonas fluorescens and the cloning and sequencing of its corresponding genes. Biochim. Biophys. Acta, 1350, 272-276 (1997).
5. Siddiqui, R. A., Warnecke-Eberz, U., Hengsberger, A., Schneider, B., Kostka, S., and Friedrich, B., Structure and function of a periplasmic nitrate reductase in Alcaligenes eutrophus H16. J. Bacteriol., 175, 5867-5876 (1993).
6. Berks, B. C., Richardson, D. J., Reilly, A., Willis, A. C., and Ferguson, S. J., The napEDABC gene cluster encoding the periplasmic nitrate reductase system of Thiosphaera pan-totropha. Biochem. J., 309, 983-992 (1995).
7. Grove, J., Tanapongpipat, S., Thomas, G., Griffiths, L., Crooke, H., and Cole, J., Escherichia coli K-12 genes essential for the synthesis of c-type cytochromes and a third nitrate reductase located in the periplasm. Mol. Microbiol., 19, 467-481 (1996).
8. Reyes, F., Roldan, M. D., Klipp, W., Castillo, F., and Moreno-Vivian, C., Isolation of periplasmic nitrate reductase genes from Rhodobacter sphaeroides DSM 158: structural and functional differences among prokaryotic nitrate reductases. Mol. Microbiol., 19, 1307-1318 (1996).
9. Reyes, F., Gavira, M., Castillo, F., and Moreno-Vivian, C., Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster. Biochem. J., 3.31, 897-904 (1998).
10. Sawada, E. and Satoh, T., Periplasmic location of dissimilatory nitrate and nitrite reductases in a denitrifying phototrophic bacterium, Rhodopseudomonas sphaeroides forma sp. denitrificans. Plant Cell Physiol., 21, 205-210 (1980).
11. Satoh, T., Soluble dissimilatory nitrate reductase containing cytochrome c from a photodenitrifier, Rhodobacter sphaeroides f. sp. Denitrificans. Plant Cell Physiol., 22, 443-452 (1981).
12. Sabaty, M., Gagnin, H., and Vermeglio, A., Induction by nitrate of cytoplasmic and periplasmic proteins in the photodenitrifier Rhodobacter sphaeroides forma sp. Denitrificans under anaerobic or aerobic condition. Arch. Microbiol., 162, 335-343 (1994).
13. Byrne, M. D. and Nicholas, D. J. D., A membrane-bound dissimilatory nitrate reductase from Rhodobacter sphaeroides f. sp. Denitrificans. Biochim. Biophys. Acta, 915, 120-124 (1987).
14. Urata, K., Shimada, K., and Satoh, T., Proton translocation associated with denitrification in a photodenitrifier, Rhodopseudomonas sphaeroides forma sp. Denitrificans. Plant Cell Physiol., 24, 501-508 (1983).
15. Satoh, T., Hoshino, Y., and Kitamura, H., Rhodopseudomonas sphaeroides forma sp. Denitrificans, a denitrifying strain as a subspecies of Rhodopseudomonas sphaeroides. Arch. Microbiol., 108, 265-269 (1976).
16. Yoshida, Y., Takai, M., Satoh, T., and Takami, S., Molybdenum requirement for translocation of dimethyl sulfoxide reductase to the periplasmic space in a photodenitrifier, Rhodobacter sphaeroides f. sp. Denitrificans. J. Bacteriol., 173, 3277-3281 (1991).
17. Sambrook, J., Fritch, E. F., and Maniatis, T., Molecular Cloning. A Laboratory Manual, 2nd edition. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, 1989.
18. Yanisch-Perron, C., Vieira, J., and Messing, J., Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mpl8 and pUC19 vectors. Gene, 33, 103-119 (1985).
19. Miller, V. L. and Mekalanos, J. J., A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol., 170, 2575-2583 (1988).
20. Penfold, R. J. and Pemberton, J. M., An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene, 118, 145-146 (1992).
21. Simon, R., Priefer, U. and Puhler, A., A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Bio J Technol., 1, 784-791 (1983).
22. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., In “Current protocols in molecular biology,” John Wiley & Sons, 1994.
23. Yamamoto, I., Wada, N., Ujiiye, T., Tachibana, M., Matsuzaki, M., Kajiwara, H., Watanabe, Y., Hirano, H., Okubo, A., Satoh, T., and Yamazaki, S., Cloning and nucleotide sequence of the gene encoding dimethyl sulfoxide reductase from Rhodobacter sphaeroides f. sp. Denitrificans. Biosci. Biotechnol. Biochem., 59, 1850-1855 (1995).
24. Vieira, J. and Messing, J., Production of single-stranded plasmid DNA. Method Enzymol., 153, 3-11 (1987).
25. Kovach, M. E, Elzer, P. H., Hill, D. S., Robertson, G. T. Farris, M. A. Roop II, R. M., and Peterson, K. M., Four new derivatives of the broad-host-range cloning vector pBBRIMCS, carrying different antibiotic-resistance cassettes. Gene, 166, 175-176 (1995).
26. Sanger, S., Nicklen, S., and Coulson, A. R., DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A., 74, 5463-5467 (1977).
27. Pearson, W. R. and Lipman, D. J., Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85, 2444-2448 (1988).
28. Ujiiye, T., Yamamoto, I., and Satoh, T., The dmsR gene encoding a dimethyl sulfoxide-responsive regulator for expression of dmsCBA (dimethyl sulfoxide respiration genes) in Rhodobacter sphaeroides f. sp. Denitrificans. Biochim. Biophys. Acta, 1353, 84-92 (1997).
29. Prentki, P. and Krisch, H. M., In vitro insertional mutagenesis with a selectable DNA fragment. Gene, 29, 303-313 (1984).
30. Sawada, E., Satoh, T., and Kitamura, H., Purification and properties of a dissimilatory nitrite reductases of a denitrifying photo-trophic bacterium. Plant Cell Physiol., 19, 1339-1351 (1978).
31. Ouahrani, S., Michaux, S., Widada, J. S., Bourg, G., Tournebize, R., Ramuz, M., and Liautard, J. P., Identification and sequence analysis of IS6501, an insertion sequence in Brucella spp.: relationship between genomic structure and the number of IS6501 copies. J. Gen. Microbiol., 139, 3265-3273 (1993).
32. Berks, B. C., A common export pathway for proteins binding complex redox cofactors? Mol. Microbiol., 22, 393-404 (1996).
33. Dreusch, A., Burgisser, D. M., Heizmann, C. W., and Zumft, W. G., Lack of copper insertion into unprocessed cytoplasmic nitrous oxide reductase generated by an R20D substitution in the arginine consensus motif of the signal peptide. Biochim. Biophys. Acta, 1319, 311-318 (1997).
34. Sato, K., Okubo, A., and Yamazaki, S., Characterization of a multi-copper enzyme, nitrous oxide reductase, from Rhodobacter sphaeroides f. sp. Denitrificans. J. Biochem., 124, 51-54 (1998).
35. 20 reduction in a photodenitrifier, Rhodobacter sphaeroides f. sp. Denitrificans. FEBS Lett., 251, 104-108 (1989).
36. Tosques, I. E., Kwiatkowski, A. V., Shi, J., and Shapleigh, J. P., Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J. Bacteriol., 178, 1090-1095 (1996).
37. Bartnikas, T. B., Tosques, I. E., Laratta, W. P., Shi, J., and Shapleigh, J. P., Characterization of the nitric oxide reductaseencoding region in Rhodobacter sphaeroides 2.4.3. J. Bacteriol., 179, 3534-3540 (1997).
38. Kwiatkowski, A. V., Laratta, W. P., Toffanin, A., and Shapleigh, J. P., Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide. J. Bacteriol., 179, 5618-5620 (1997).
39. Schwintner, C., Sabaty, M., Berna, B., Cahors, S., and Richaud, P., Plasmid content and localization of the genes encoding the denitrification enzymes in two strains of Rhodobacter sphaeroides. FEMS Microbiol. Lett., 165, 313-321 (1998).