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Volumn 48, Issue 4, 1999, Pages 408-420

Archaeabacterial seryl-tRNA synthetases: Adaptation to extreme environments and evolutionary analysis

Author keywords

Archaeabacteria; Extreme environment adaptation; Phylogeny; Seryl tRNA synthetases; Threonyl tRNA synthetases; tRNA; Universal tree

Indexed keywords

ADAPTATION; AMINO ACID ANALYSIS; AMINO ACID COMPOSITION; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARCHAEBACTERIUM; ARTICLE; CATALYSIS; CELL CYCLE; ENVIRONMENT; ENZYME ACTIVITY; EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY;

EID: 0033058712     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006485     Document Type: Article
Times cited : (11)

References (61)
  • 2
    • 0029127816 scopus 로고
    • Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate
    • Arnez J, Harris D, Mitschler A, Rees B, Frandklyn C, Moras D (1995) Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate. EMBO J 14:4143-4155
    • (1995) EMBO J , vol.14 , pp. 4143-4155
    • Arnez, J.1    Harris, D.2    Mitschler, A.3    Rees, B.4    Frandklyn, C.5    Moras, D.6
  • 3
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • Baldauf SL, Palmer JD, Doolittle WF (1996) The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc Natl Acad Sci USA 93:7749-7754
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 4
    • 0018061617 scopus 로고
    • Recent developments in the molecular biology of extremely halophilic bacteria
    • Bayley S, Morton R (1978) Recent developments in the molecular biology of extremely halophilic bacteria. CRC Crit Rev Microbiol 6:151-205
    • (1978) CRC Crit Rev Microbiol , vol.6 , pp. 151-205
    • Bayley, S.1    Morton, R.2
  • 8
    • 0028941917 scopus 로고
    • Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
    • Brown JR, Doolittle WF (1995) Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc Natl Acad Sci USA 92:2441-2445
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 2441-2445
    • Brown, J.R.1    Doolittle, W.F.2
  • 9
    • 0028308478 scopus 로고
    • Evolutionary relationships of bacterial and archaeal glutamine synthetase genes
    • Brown JR, Masuchi Y, Robb FT, Doolittle WF (1994) Evolutionary relationships of bacterial and archaeal glutamine synthetase genes. J Mol Evol 38:566-576
    • (1994) J Mol Evol , vol.38 , pp. 566-576
    • Brown, J.R.1    Masuchi, Y.2    Robb, F.T.3    Doolittle, W.F.4
  • 10
    • 0030788417 scopus 로고    scopus 로고
    • Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases
    • Brown JR, Robb FT, Weiss R, Doolittle WF (1997) Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases. J Mol Evol 45:9-16
    • (1997) J Mol Evol , vol.45 , pp. 9-16
    • Brown, J.R.1    Robb, F.T.2    Weiss, R.3    Doolittle, W.F.4
  • 12
    • 0026724507 scopus 로고
    • Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: Phylogenetic coherence and structure of the archaeal domain
    • Cammarano P, Palm P, Creti R, Ceccarelli E, Sanangelantoni AM, Tiboni O (1992) Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain. J Mol Evol 34:396-405
    • (1992) J Mol Evol , vol.34 , pp. 396-405
    • Cammarano, P.1    Palm, P.2    Creti, R.3    Ceccarelli, E.4    Sanangelantoni, A.M.5    Tiboni, O.6
  • 13
    • 0026760924 scopus 로고
    • The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms
    • Cousineau B, Cerpa C, Lefebvre J, Cedergren R (1992) The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms. Gene 120:33-41
    • (1992) Gene , vol.120 , pp. 33-41
    • Cousineau, B.1    Cerpa, C.2    Lefebvre, J.3    Cedergren, R.4
  • 14
    • 0028202438 scopus 로고
    • Evolution of translational elongation factor (EF) sequences: Reliability of global phylogenies inferred from EF-1α(Tu) and EF-2(G) proteins
    • Creti R, Ceccarelli E, Bochetta M, Sanangelantoni AM, Tiboni O, Palm P (1994) Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-1α(Tu) and EF-2(G) proteins. Proc Natl Acad Sci USA 91:3255-3259
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 3255-3259
    • Creti, R.1    Ceccarelli, E.2    Bochetta, M.3    Sanangelantoni, A.M.4    Tiboni, O.5    Palm, P.6
  • 15
    • 0029781454 scopus 로고    scopus 로고
    • tRNA-dependent asparagine formation
    • Curnow AC, Ibba M, Söll D (1996) tRNA-dependent asparagine formation. Nature 382:589-590
    • (1996) Nature , vol.382 , pp. 589-590
    • Curnow, A.C.1    Ibba, M.2    Söll, D.3
  • 16
    • 0029099218 scopus 로고
    • Eleven down and nine to go
    • Cusack S (1995) Eleven down and nine to go. Nature Struct Biol 2:824-831
    • (1995) Nature Struct Biol , vol.2 , pp. 824-831
    • Cusack, S.1
  • 17
    • 0025043116 scopus 로고
    • A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å
    • Cusack S, Berthet-Colominas C, Härtlein M, Nassar N, Leberman R (1990) A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å. Nature 347:249-255
    • (1990) Nature , vol.347 , pp. 249-255
    • Cusack, S.1    Berthet-Colominas, C.2    Härtlein, M.3    Nassar, N.4    Leberman, R.5
  • 18
    • 0025874160 scopus 로고
    • Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases
    • Cusack S, Härtlein M, Leberman R (1991) Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases. Nucleic Acids Res 19:3489-3498
    • (1991) Nucleic Acids Res , vol.19 , pp. 3489-3498
    • Cusack, S.1    Härtlein, M.2    Leberman, R.3
  • 19
    • 0028962795 scopus 로고
    • Of Archaea and Eo: What's in a name?
    • Doolittle RF (1995) Of Archaea and Eo: what's in a name? Proc Natl Acad Sci USA 92:2421-2423
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 2421-2423
    • Doolittle, R.F.1
  • 20
    • 0028958071 scopus 로고
    • Structural features that stabilize halophilic malate dehydrogenase from an Archaebacterium
    • Dym O, Mevarech M, Sussman JL (1995) Structural features that stabilize halophilic malate dehydrogenase from an Archaebacterium. Science 267:1344-1346
    • (1995) Science , vol.267 , pp. 1344-1346
    • Dym, O.1    Mevarech, M.2    Sussman, J.L.3
  • 21
    • 0025158208 scopus 로고
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequences motifs
    • Eriani G, Delarue M, Poch O, Gangloff J, Moras D (1990) Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequences motifs. Nature 347:203-206
    • (1990) Nature , vol.347 , pp. 203-206
    • Eriani, G.1    Delarue, M.2    Poch, O.3    Gangloff, J.4    Moras, D.5
  • 23
    • 0026210241 scopus 로고
    • Analysis and modulation of protein stability
    • Fontana A (1991) Analysis and modulation of protein stability. Curr Opin Biotechnol 2:551-560
    • (1991) Curr Opin Biotechnol , vol.2 , pp. 551-560
    • Fontana, A.1
  • 24
    • 0026560871 scopus 로고
    • The DNA polymerase from the archaebacterium Pyrococcus furiosus does not testify for a specific relationship between archaebacteria and eukaryotes
    • Forterre P (1992) The DNA polymerase from the archaebacterium Pyrococcus furiosus does not testify for a specific relationship between archaebacteria and eukaryotes. Nucleic Acids Res 20:1811
    • (1992) Nucleic Acids Res , vol.20 , pp. 1811
    • Forterre, P.1
  • 25
    • 0029171489 scopus 로고
    • Looking for the most "primitive" organism(s) on Earth today: The state of the art
    • Forterre P (1995a) Looking for the most "primitive" organism(s) on Earth today: the state of the art. Planet Space Sci 43:167-177
    • (1995) Planet Space Sci , vol.43 , pp. 167-177
    • Forterre, P.1
  • 26
    • 0028989816 scopus 로고
    • Thermoreduction, a hypothesis for the origin of prokaryotes
    • Forterre P (1995b) Thermoreduction, a hypothesis for the origin of prokaryotes. CR Acad Sci Paris 318:415-422
    • (1995) CR Acad Sci Paris , vol.318 , pp. 415-422
    • Forterre, P.1
  • 27
    • 0029899126 scopus 로고    scopus 로고
    • A hot topic: The origin of hyperthermophiles
    • Forterre P (1996) A hot topic: the origin of hyperthermophiles. Cell 85:789-792
    • (1996) Cell , vol.85 , pp. 789-792
    • Forterre, P.1
  • 30
    • 0030010138 scopus 로고    scopus 로고
    • Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin
    • Frolow F, Harel M, Sussman J, Mevarech M, Shoham M (1996) Insights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin. Nature Struct Biol 3:452-458
    • (1996) Nature Struct Biol , vol.3 , pp. 452-458
    • Frolow, F.1    Harel, M.2    Sussman, J.3    Mevarech, M.4    Shoham, M.5
  • 31
    • 0027491528 scopus 로고
    • Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 Å resolution
    • Fujinaga M, Berthet-Colominas C, Yaremchuck AD, Tukalo MA, Cusack S (1993) Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 Å resolution. J Mol Biol 234:222-233
    • (1993) J Mol Biol , vol.234 , pp. 222-233
    • Fujinaga, M.1    Berthet-Colominas, C.2    Yaremchuck, A.D.3    Tukalo, M.A.4    Cusack, S.5
  • 33
    • 0027420885 scopus 로고
    • Evolution of HSP70 gene and its implications regarding relationships between archaeabacteria, eubacteria, and eukaryotes
    • Gupta RS, Golding GB (1993) Evolution of HSP70 gene and its implications regarding relationships between archaeabacteria, eubacteria, and eukaryotes. J Mol Evol 37:573-582
    • (1993) J Mol Evol , vol.37 , pp. 573-582
    • Gupta, R.S.1    Golding, G.B.2
  • 34
    • 0031022823 scopus 로고    scopus 로고
    • Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes
    • Gupta RS, Bustard K, Falah M, Singh D (1997) Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes. J Bacteriol 179:345-357
    • (1997) J Bacteriol , vol.179 , pp. 345-357
    • Gupta, R.S.1    Bustard, K.2    Falah, M.3    Singh, D.4
  • 35
    • 0028943076 scopus 로고
    • Structure, function and evolution of seryl-tRNA synthetases: Implications for the evolution of aminoacyl-tRNA synthetases and the genetic code
    • Härtlein M, Cusack S (1995) Structure, function and evolution of seryl-tRNA synthetases: implications for the evolution of aminoacyl-tRNA synthetases and the genetic code. J Mol Evol 40:519-530
    • (1995) J Mol Evol , vol.40 , pp. 519-530
    • Härtlein, M.1    Cusack, S.2
  • 36
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • Higgins DG, Sharp PM (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 37
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogcnetic trees of duplicated genes
    • Iwabe N, Kuma K-I, Hasegawa M, Osawa S, Miyata T (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogcnetic trees of duplicated genes. Proc Natl Acad Sci USA 86:9355-9359
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.-I.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 38
    • 0026320508 scopus 로고
    • Protein stability and molecular adaptation to extreme conditions
    • Jaenicke R (1991) Protein stability and molecular adaptation to extreme conditions. Eur J Biochem 202:715-728
    • (1991) Eur J Biochem , vol.202 , pp. 715-728
    • Jaenicke, R.1
  • 39
    • 4243433173 scopus 로고    scopus 로고
    • Enzymes hyperthermophiles impliquées dans les voies de biosynthèse: Cas de l'adénylosuccinate synthétase et des ornithine et aspartate carbamoyltransférases
    • Février 1996
    • Labedan B, Boyoub A, Boyen A (1996) Enzymes hyperthermophiles impliquées dans les voies de biosynthèse: cas de l'adénylosuccinate synthétase et des ornithine et aspartate carbamoyltransférases. Communication au premier colloque francophone sur la biologie moléculaire des thermophiles, 5-7 Février 1996
    • (1996) Communication au Premier Colloque Francophone sur la Biologie Moléculaire des Thermophiles , pp. 5-7
    • Labedan, B.1    Boyoub, A.2    Boyen, A.3
  • 40
    • 0000308411 scopus 로고
    • In defense of bacterial phylogeny
    • Lake JA (1986) In defense of bacterial phylogeny. Nature 321:657-658
    • (1986) Nature , vol.321 , pp. 657-658
    • Lake, J.A.1
  • 41
    • 0024285855 scopus 로고
    • Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
    • Lake JA (1988) Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature 331:184-186
    • (1988) Nature , vol.331 , pp. 184-186
    • Lake, J.A.1
  • 42
    • 0025961761 scopus 로고
    • Tracing origins with molecular sequences: Metazoan and eukaryotic beginnings
    • Lake JA (1991) Tracing origins with molecular sequences: metazoan and eukaryotic beginnings. Trends Biochem Sci 16:46-50
    • (1991) Trends Biochem Sci , vol.16 , pp. 46-50
    • Lake, J.A.1
  • 43
    • 0039861672 scopus 로고
    • Eocytes: A new ribosomes structure indicates a kingdom with a close relationship to eukaryotes
    • Lake JA, Henderson E, Oakes M, Clark MW (1984) Eocytes: a new ribosomes structure indicates a kingdom with a close relationship to eukaryotes. Proc Natl Acad Sci USA 81:3786-3790
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 3786-3790
    • Lake, J.A.1    Henderson, E.2    Oakes, M.3    Clark, M.W.4
  • 45
    • 0027992228 scopus 로고
    • Evolution of the Glx-tRNA synthetase family: The glutaminyl enzyme as a case of horizontal gene transfer
    • Lamour V, Quevillon S, Diriong S, N'Guyen VC, Lipinski M, Mirande M (1994) Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer. Proc Natl Acad Sci USA 91:8670-8674
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8670-8674
    • Lamour, V.1    Quevillon, S.2    Diriong, S.3    N'Guyen, V.C.4    Lipinski, M.5    Mirande, M.6
  • 46
    • 0029091055 scopus 로고
    • Crystal structure of glycyl-tRNA synthetase from Thermus thermophilus
    • Logan D, Mazauric M-H, Kern D, Moras D (1995) Crystal structure of glycyl-tRNA synthetase from Thermus thermophilus. EMBO J 14: 4156-4167
    • (1995) EMBO J , vol.14 , pp. 4156-4167
    • Logan, D.1    Mazauric, M.-H.2    Kern, D.3    Moras, D.4
  • 47
    • 0024974452 scopus 로고    scopus 로고
    • Engineering protein thermal stability: Sequence statistics point to residue substitutions in α-helices
    • Menéndez-Arias L, Argos P (1989) Engineering protein thermal stability: sequence statistics point to residue substitutions in α-helices. J Mol Biol 206:397-406, Microbial Ecol 2:139-161
    • (1989) J Mol Biol , vol.206 , pp. 397-406
    • Menéndez-Arias, L.1    Argos, P.2
  • 48
    • 0024974452 scopus 로고    scopus 로고
    • Menéndez-Arias L, Argos P (1989) Engineering protein thermal stability: sequence statistics point to residue substitutions in α-helices. J Mol Biol 206:397-406, Microbial Ecol 2:139-161
    • Microbial Ecol , vol.2 , pp. 139-161
  • 49
    • 0027231935 scopus 로고
    • Sequence, overproduction and crystallization of aspartyl-tRNA synthetase from Thermus thermophilus: Implications for the structure of prokaryotic aspartyl-tRNA synthetases
    • Poterszman A, Plateau P, Moras D, Blanquet S, Mazauric M-H, Kreutzer R, Kern D (1993) Sequence, overproduction and crystallization of aspartyl-tRNA synthetase from Thermus thermophilus: implications for the structure of prokaryotic aspartyl-tRNA synthetases. FEBS Lett 325:183-186
    • (1993) FEBS Lett , vol.325 , pp. 183-186
    • Poterszman, A.1    Plateau, P.2    Moras, D.3    Blanquet, S.4    Mazauric, M.-H.5    Kreutzer, R.6    Kern, D.7
  • 52
    • 0013584191 scopus 로고
    • Some tests for outliers
    • Quesenberry C, David H (1961) Some tests for outliers. Biometrika 48:379-390
    • (1961) Biometrika , vol.48 , pp. 379-390
    • Quesenberry, C.1    David, H.2
  • 53
    • 0020036685 scopus 로고
    • Unusual physical organization of the Halobacterium genome
    • Sapienza C, Doolittle WF (1982) Unusual physical organization of the Halobacterium genome. Nature 295:384-389
    • (1982) Nature , vol.295 , pp. 384-389
    • Sapienza, C.1    Doolittle, W.F.2
  • 54
    • 0031578224 scopus 로고    scopus 로고
    • The stabilizing residues and the functional domains in the hyperthermophilic V-ATPase of Desulfurococcus
    • Shibui H, Hamamoto T, Yohda M, Kagawa Y (1997) The stabilizing residues and the functional domains in the hyperthermophilic V-ATPase of Desulfurococcus. Biochem Biophys Res Commun 234: 341-345
    • (1997) Biochem Biophys Res Commun , vol.234 , pp. 341-345
    • Shibui, H.1    Hamamoto, T.2    Yohda, M.3    Kagawa, Y.4
  • 55
    • 0026490002 scopus 로고
    • Evolution by acquisition: The case for horizontal gene transfers
    • Smith MW, Feng D-F, Doolittle RF (1992) Evolution by acquisition: the case for horizontal gene transfers. Trends Biochem Sci 17:489-493
    • (1992) Trends Biochem Sci , vol.17 , pp. 489-493
    • Smith, M.W.1    Feng, D.-F.2    Doolittle, R.F.3
  • 56
    • 0031030713 scopus 로고    scopus 로고
    • Seryl-tRNA synthetase from the extreme halophile Haloarcula marismortui: Isolation, characterization, sequencing of the gene and expression in Escherichia coli
    • Taupin CM-J, Härtlein M, Leberman R (1997) Seryl-tRNA synthetase from the extreme halophile Haloarcula marismortui: isolation, characterization, sequencing of the gene and expression in Escherichia coli. Eur J Biochem 243:141-150
    • (1997) Eur J Biochem , vol.243 , pp. 141-150
    • Taupin, C.M.-J.1    Härtlein, M.2    Leberman, R.3
  • 57
    • 0028816664 scopus 로고
    • An epitope of elongation factor Tu is widely distributed within the bacterial and archaeal domains
    • Weber S, Lottspeich F, Köhl J (1995) An epitope of elongation factor Tu is widely distributed within the bacterial and archaeal domains. J Bacteriol 177:11-19
    • (1995) J Bacteriol , vol.177 , pp. 11-19
    • Weber, S.1    Lottspeich, F.2    Köhl, J.3
  • 58
    • 0015354787 scopus 로고
    • Further codon assignments in an extremely halophilic bacterium using a cell-free protein-synthesizing system and a ribosomal binding assay
    • White B, Bayley S (1972) Further codon assignments in an extremely halophilic bacterium using a cell-free protein-synthesizing system and a ribosomal binding assay. Can J Biochem 50:600-609
    • (1972) Can J Biochem , vol.50 , pp. 600-609
    • White, B.1    Bayley, S.2
  • 59
    • 0001909426 scopus 로고
    • Archaeabacteria
    • Woese CR (1981) Archaeabacteria. Sci Am 244:94-106
    • (1981) Sci Am , vol.244 , pp. 94-106
    • Woese, C.R.1
  • 60
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese CR (1987) Bacterial evolution. Microbiol Rev 51:221-271
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 61
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576-4579
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


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