Hepatitis delta virus ribozymes fold to generate a solvent-inaccessible core with essential nucleotides near the cleavage site phosphate

Biochemistry

Volumn 35, Issue 35, 1996, Pages 11403-11413

  Rosenstein, Sarah P ^a   Been, Michael D ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIVALENT CATION; MAGNESIUM; MONOVALENT CATION; NUCLEOTIDE; RIBOZYME; SOLVENT; VIRUS RNA;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME DEGRADATION; HEPATITIS DELTA VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN FOLDING;

AZIDES; BASE SEQUENCE; BINDING SITES; CROSS-LINKING REAGENTS; EDETIC ACID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FERROUS COMPOUNDS; HEPATITIS DELTA VIRUS; HYDROXYL RADICAL; MAGNESIUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHOTOLYSIS; RNA, CATALYTIC; RNA, VIRAL; ULTRAVIOLET RAYS;

DELTA VIRUS; HEPATITIS DELTA VIRUS;

EID: 0029781027     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9609984     Document Type: Article

References (50)

1. Been, M. D. (1994) Trends Biochem. Sci. 19, 251-256.
2. Been, M. D., & Perrotta, A. T. (1991) Science 252, 434-437.
3. Been, M. D., & Perrotta, A. T. (1995) RNA 1, 1061-1070.
4. Been, M. D., Perrotta, A. T., & Rosenstein, S. P. (1992) Biochemistry 31, 11843-11852.
5. Belinsky, M. G., Britton, E., & Dinter-Gottlieb, G. (1993) FASEB J. 7, 130-136.
6. Branch, A. D., & Robertson, H. D. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 10163-10167.
7. Bravo, C., Lescure, F., Laugâa, P., Fourrey, J.-L., & Favre, A. (1996) Nucleic Acids Res. 24, 1351-1360.
8. Burgin, A. B., & Pace, N. R. (1990) EMBO J. 9, 4111-4118.
9. Burkhoff, A. M., & Tullius, T. D. (1987) Cell 48, 935-943.
10. Celander, D. W., & Cech, T. R. (1990) Biochemistry 29, 1355-1361.
11. Chowrira, B. M., Berzal-Herranz, A., & Burke, J. M. (1993) Biochemistry 32, 1088-1095.
12. Christian, E. L., & Yarus, M. (1993) Biochemistry 32, 4475-4480.
13. Dahm, S. C., & Uhlenbeck, O. C. (1991) Biochemistry 30, 9464-9469.
14. Davanloo, P., Rosenberg, A. H., Dunn, J. J., & Studier, F. W. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 2035-2039.
15. Grosshans, C. A., & Cech, T. R. (1989) Biochemistry 28, 6888-6894.
16. Hertzberg, R. P., & Dervan, P. B. (1984) Biochemistry 23, 3934-3945.
17. Heuer, T. S., Chandry, P. S., Beifort, M., Celander, D. W., & Cech, T. R. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 11105-11109.
18. Jack, A., Ladner, J. E., Rhodes, D., Brown, R. S., & Klug, A. (1977) J. Mol. Biol. 111, 315-328.
19. Jeng, K.-S., Daniel, A., & Lai, M. M. C. (1996) J. Virol. 70, 2403-2410.
20. Kumar, P. K. R., Suh, Y.-A., Miyashiro, H., Nishikawa, F., Kawakami, J., Taira, K., & Nishikawa, S. (1992) Nucleic Acids Res. 20, 3919-3924.
21. Kumar, P. K. R., Suh, Y.-A., Taira, K., & Nishikawa, S. (1993) FASEB J. 7, 124-129.
22. Kumar, P. K. R., Taira, K., & Nishikawa, S. (1994) Biochemistry 33, 583-592.
23. Kuo, M. Y.-P., Sharmeen, L., Dinter-Gottleib, G., & Taylor, J. (1988) J. Virol. 62, 4439-4444.
24. Latham, J. A., & Cech, T. R. (1989) Science 245, 276-282.
25. MacNaughton, T. B., Wang, Y.-J., & Lai, M. M. C. (1993) J. Virol. 67, 2228-2234.
26. Maniatis, T., Fritsch, E. F., & Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
27. Nolan, J. M., Burke, D. H., & Pace, N. R. (1993) Science 261, 762-765.
28. Perreault, J.-P., & Altman, S. (1993) J. Mol. Biol. 230, 750-756.
29. Perrotta, A. T., & Been, M. D. (1990) Nucleic Acids Res. 18, 6821-6827.
30. Perrotta, A. T., & Been, M. D. (1991) Nature 350, 434-436.
31. Perrotta, A. T., & Been, M. D. (1992) Biochemistry 31, 16-21.
32. Perrotta, A. T., & Been, M. D. (1993) Nucleic Acids Res. 21, 3959-3965.
33. Perrotta, A. T., & Been, M. D. (1996) Nucleic Acids Res. 24, 1314-1321.
34. Piccirilli, J. A., Vyle, J. S., Caruthers, M. H., & Cech, T. R. (1993) Nature 361, 85-88.
35. Puttaraju, M., Perrotta, A., & Been, M. (1993) Nucleic Acids Res. 21, 4253-4258.
36. Pyle, A. M. (1993) Science 261, 709-714.
37. Rosenstein, S. P., & Been, M. D. (1990) Biochemistry 29, 8011-8016.
38. Rosenstein, S. P., & Been, M. D. (1991) Nucleic Acids Res. 19, 5409-5416.
39. Sharmeen, L., Kuo, M. Y.-P., Dinter-Gottlieb, G., & Taylor, J. (1988) J. Virol. 62, 2674-2679.
40. Smith, D., & Pace, N. R. (1993) Biochemistry 32, 5273-5281.
41. Steitz, T. A., & Steitz, J. A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6498-6502.
42. Tanner, N. K., & Cech, T. R. (1987) Biochemistry 26, 3330-3340.
43. Tanner, N. K., Schaff, S., Thill, G., Petit-Koskas, E., Crain-Denoyelle, A.-M., & Westhof, E. (1994) Curr. Biol. 4, 488-497.
44. Thill, G., Vasseur, M., & Tanner, N. K. (1993) Biochemistry 32, 4254-4262.
45. Tullius, T. D. (1987) Trends Biochem. Sci. 12, 297-300.
46. Wang, J.-F., Downs, W. D., & Cech, T. R. (1993) Science 260, 504-508.
47. Wu, H.-N., & Huang, Z.-S. (1992) Nucleic Acids Res. 20, 5937-5941.
48. Wu, H.-N., Lin, Y.-J., Lin, F.-P., Makino, S., Chang, M.-F., & Lai, M. M. C. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 1831-1835.
49. Wu, H.-N., Wang, Y.-J., Hung, C.-F., Lee, H.-J., & Lai, M. M. C. (1992) J. Mol. Biol. 223, 233-245.
50. Wu, H.-N., Lee, J.-Y., Huang, H.-W., Huang, Y.-s., & Hsueh, T.-G. (1993) Nucleic Acids Res. 21, 4193-4199.