A sequence with homology to human HPFH-linked enhancer elements and to a family of G-protein linked membrane receptor genes is located downstream of the chicken β-globin locus

Gene

Volumn 234, Issue 2, 1999, Pages 345-352

  Staines, Daniel M ^a   Thomas, Jean O ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Hemoglobin; Hereditary persistence of fetal hemoglobin; Olfactory receptor; R7G

Indexed keywords

BETA GLOBIN; GUANINE NUCLEOTIDE BINDING PROTEIN; HEMOGLOBIN; HEMOGLOBIN F; MEMBRANE RECEPTOR;

ARTICLE; CHICKEN; CONTROLLED STUDY; ENHANCER REGION; GENE LOCATION; GENE LOCUS; GENETIC ANALYSIS; GENETIC DISORDER; HUMAN; HYDROPHOBICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHICKENS; CHROMOSOME MAPPING; DNA; ENHANCER ELEMENTS (GENETICS); FETAL HEMOGLOBIN; GLOBINS; GTP-BINDING PROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; RECEPTORS, CELL SURFACE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

AVES; GALLUS GALLUS;

EID: 0033038252     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00186-9     Document Type: Article

References (36)

1. Altschul S.F., Gish W., Miller W., Myer E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Argos P., McCaldon P. Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences. Proteins. 4:1988;99-122.
3. Bankier A.T., Weston K.M., Barrell B.G. Random cloning and sequencing by the M13/dideoxynucleotide chain termination method. Methods Enzymol. 155:1987;51-93.
4. Barton M.C., Hoekstra M.F., Emerson B.M. Site-directed, recombination-mediated mutagenesis of a complex gene locus. Nucleic Acids Res. 18:1990;7349-7355.
5. Barton M.C., Madani N., Emerson B.M. The erythroid protein cGATA-1 functions with a stage-specific factor to activate transcription of chromatin-assembled β-globin genes. Genes Dev. 7:1993;1796-1809.
6. Benton M.J. Phylogeny of the major tetrapod groups - morphological data and divergence dates. J. Mol. Evol. 30:1990;409-424.
7. Bird A.P. CpG-rich islands and the function of DNA methylation. Nature. 321:1986;209-213.
8. Buettner J.A., Glusman G., Ben-Arie N., Ramos P., Lancet D., Evans G.A. Organisation and evolution of olfactory receptor genes on human chromosome 11. Genomics. 53:1998;56-68.
9. Chung J.H., Bell A.C., Felsenfeld G. Characterization of the chicken β-globin insulator. Proc. Natl. Acad. Sci. USA. 94:1997;575-580.
10. Chung J.H., Whiteley M., Felsenfeld G. A 5′ element of the chicken β-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila. Cell. 74:1993;505-514.
11. Czelusniak J., Goodman M., Hewett-Emmett D., Weiss M.L., Venta P.J., Tashian R.E. Phylogenetic origins and adaptive evolution of avian and mammalian hemoglobin genes. Nature. 298:1982;297-300.
12. Evans T., Felsenfeld G., Reitman M. Control of globin gene transcription. Annu. Rev. Cell Biol. 6:1990;95-124.
13. Feingold E.A., Forget B.G. The breakpoint of a large deletion causing hereditary persistence of fetal hemoglobin occurs within an erythroid DNA domain remote from the β-globin gene cluster. Blood. 74:1989;2178-2186.
14. Garnier J., Osguthorpe D.J., Robson B. Analysis of accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 120:1978;97-120.
15. Groudine M., Peretz M., Weintraub H. Transcriptional regulation of Hb switching in chicken embryos. Mol. Cell. Biol. 1:1981;281-288.
16. Hebbes T.R., Clayton A.L., Thorne A.W., Crane-Robinson C. Core histone acetylation co-maps with generalized DNase I sensitivity in the chicken β-globin chromosomal domain. EMBO J. 13:1994;1823-1830.
17. Kosteas T., Pavlou O., Palena A., Moschonas N., Anagnou N.P. Complete sequencing and functional analysis of the HPFH-6 enhancer - detection of multiple motifs for transcription factors and identification of an open reading frame. Blood. 88:1996;588.
18. Kudrycki K., Stein-Izsak C., Behn C., Grillo M., Akeson R., Margolis F.L. Olf-1-binding site, characterisation of an olfactory neuron-specific promoter motif. Mol. Cell. Biol. 13:1993;3002-3014.
19. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132.
20. Lancet D., Ben-Arie N. Olfactory receptors. Curr. Biol. 3:1993;668-674.
21. Leibovici M., Lapointe F., Aletta P., Ayer-LeLièvre C. Avian olfactory receptors: differentiation of olfactory neurons under normal and experimental conditions. Dev. Biol. 175:1996;118-131.
22. Lo K., Smale S.T. Generality of a functional initiator consensus sequence. Gene. 182:1996;13-22.
23. Mason M.M., Lee E., Westphal H., Reitman M. Expression of the chicken β-globin gene cluster in mice, correct developmental expression and distributed control. Mol. Cell. Biol. 15:1995;407-414.
24. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
25. Raming K., Krieger J., Strotmann J., Boekhoff I., Kubick S., Baumstark C., Breer H. Cloning and expression of odorant receptors. Nature. 361:1993;353-356.
26. Reitman M., Felsenfeld G. Developmental regulation of topoisomerase II sites and DNase I-hypersensitive sites in the chicken β-globin locus. Mol. Cell. Biol. 10:1990;2774-2786.
27. Reitman M., Grasso J.A., Blumenthal R., Lewit P. Primary sequence, evolution and repetitive elements of the Gallus gallus (chicken) β-globin cluster. Genomics. 18:1993;616-626.
28. Shapira E., Yarus S., Fainsod A. Genomic organization and expression during embryogenesis of the chicken CR-1 repeat. Genomics. 10:1991;931-939.
29. Silva R., Burch J.B.E. Evidence that chicken CR-1 elements represent a novel family of retroposons. Mol. Cell. Biol. 9:1989;3563-3566.
30. Staden R. Finding protein coding regions in genomic sequences. Methods Enzymol. 183:1990;163-180.
31. Stalder J., Larsen A., Engel J.D., Dolan M., Groudine M., Weintraub H. Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I. Cell. 20:1980;451-460.
32. Stamatoyannopoulos G.N., Nienhuis A.W. Hemoglobin switching. Stamatoyannopoulos G.N., Nienhuis A.W., Majerus P.W., Varmus H. The Molecular Basis of Blood Diseases. 1994;107-156 W.B. Saunders, Philadelphia.
33. Strosberg A.D. Structure-function relationship of proteins belonging to the family of receptors coupled to GTP-binding proteins. Eur. J. Biochem. 196:1991;1-10.
34. Stumph W.E., Hodgson C.P., Tsai M.-J., O'Malley B.W. Genomic structure and possible retroviral origin of the chicken CR1 repetitive DNA sequence family. Proc. Natl. Acad. Sci. USA. 81:1984;6667-6671.
35. Verreault A., Thomas J.O. Chromatin structure of the β-globin chromosomal domain in adult chicken erythrocytes. Cold Spring Harbor Symp. Quant. Biol. 58:1993;15-24.
36. Villeponteau B., Landes G.M., Pankratz M.J., Martinson H.G. The chicken β-globin gene region, delineation of transcription units and developmental regulation of interspersed DNA repeats. J. Biol. Chem. 257:1982;11015-11023.