메뉴 건너뛰기




Volumn 28, Issue 2, 1999, Pages 137-141

Discrimination of Rhizobium tropici and R. leguminosarum strains by PCR-specific amplification of 16S-23S rDNA spacer region fragments and denaturing gradient gel electrophoresis (DGGE)

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; ELECTROPHORESIS;

EID: 0033032343     PISSN: 02668254     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.1999.00480.x     Document Type: Article
Times cited : (23)

References (28)
  • 1
    • 0028971101 scopus 로고
    • Diversity of rhizobia nodulating Phaseolus vulgaris L. in two Kenyan soils with contrasting pHs
    • Anyango, B., Wilson, K.J., Beynon, J.L. and Giller, K.E. (1995) Diversity of rhizobia nodulating Phaseolus vulgaris L. in two Kenyan soils with contrasting pHs. Applied and Environmental Microbiology 61, 4016-4021.
    • (1995) Applied and Environmental Microbiology , vol.61 , pp. 4016-4021
    • Anyango, B.1    Wilson, K.J.2    Beynon, J.L.3    Giller, K.E.4
  • 2
    • 0030793728 scopus 로고    scopus 로고
    • Increased species diversity and extended habitat range of sulfur-oxidizing Thiomicrospira spp.
    • Brinkhoff, T. and Muyzer, G. (1997) Increased species diversity and extended habitat range of sulfur-oxidizing Thiomicrospira spp. Applied and Environmental Microbiology 63, 3789-3796.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3789-3796
    • Brinkhoff, T.1    Muyzer, G.2
  • 3
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris, M.J., Muyzer, G. and Ward, D.M. (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Applied and Environmental Microbiology 62, 340-346.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 4
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S 23S rDNA spacer region
    • Gürtler, V. and Stanisich, V.A. (1996) New approaches to typing and identification of bacteria using the 16S 23S rDNA spacer region. Microbiology 142, 3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gürtler, V.1    Stanisich, V.A.2
  • 5
    • 0010689923 scopus 로고    scopus 로고
    • The importance of host plants for detecting the population diversity of Rhizobium leguminosarum biovar viciae in soil
    • Handley, B.A., Hedges, A.J. and Beringer, J.E. (1998) The importance of host plants for detecting the population diversity of Rhizobium leguminosarum biovar viciae in soil. Soil Biology and Biochemistry 30, 241-249.
    • (1998) Soil Biology and Biochemistry , vol.30 , pp. 241-249
    • Handley, B.A.1    Hedges, A.J.2    Beringer, J.E.3
  • 6
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer, H., Krsek, M., Baker, P., Smalla, K. and Wellington, E.M.H. (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Applied and Environmental Microbiology 63, 3233-3241.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 7
    • 84987043534 scopus 로고
    • Developmental biology of legume nodulation
    • Hirsh, A.M. (1992) Developmental biology of legume nodulation. New Phytologist 122, 211-237.
    • (1992) New Phytologist , vol.122 , pp. 211-237
    • Hirsh, A.M.1
  • 8
    • 0029566239 scopus 로고
    • tRNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans
    • Honeycutt, R.J., Sobral, B.W.S. and McClelland, M. (1995) tRNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans. Microbiology 141, 3229-3239.
    • (1995) Microbiology , vol.141 , pp. 3229-3239
    • Honeycutt, R.J.1    Sobral, B.W.S.2    McClelland, M.3
  • 9
    • 0027195734 scopus 로고
    • Conformity and diversity among field isolates of Rhizobium leguminosarum bv. viciae, bv. trifolii, and bv. phaseoli revealed by DNA hybridization using chromosome and plasmid probes
    • Laguerre, G., Geniaux, E., Mazurier, S.I., Rodriguez-Casartelli, R. and Amarger, N. (1993a) Conformity and diversity among field isolates of Rhizobium leguminosarum bv. viciae, bv. trifolii, and bv. phaseoli revealed by DNA hybridization using chromosome and plasmid probes. Canadian Journal of Microbiology 39, 412-419.
    • (1993) Canadian Journal of Microbiology , vol.39 , pp. 412-419
    • Laguerre, G.1    Geniaux, E.2    Mazurier, S.I.3    Rodriguez-Casartelli, R.4    Amarger, N.5
  • 10
    • 0027742175 scopus 로고
    • Isolation from soil of symbiotic and nonsymbiotic Rhizobium leguminosarum by DNA hybridization
    • Laguerre, G., Bardin, M. and Amarger, N. (1993b) Isolation from soil of symbiotic and nonsymbiotic Rhizobium leguminosarum by DNA hybridization. Canadian Journal of Microbiology 39, 1142- 1149.
    • (1993) Canadian Journal of Microbiology , vol.39 , pp. 1142-1149
    • Laguerre, G.1    Bardin, M.2    Amarger, N.3
  • 11
    • 0029891660 scopus 로고    scopus 로고
    • Typing of rhizobia by PCR DNA fingerprinting and PCR-Restriction Fragment Length Polymorphism analysis of chromosomal and symbiotic gene regions: Application to Rhizobium leguminosarum and its different biovars
    • Laguerre, G., Mavingui, P., Allard, M.-R. et al. (1996) Typing of rhizobia by PCR DNA fingerprinting and PCR-Restriction Fragment Length Polymorphism analysis of chromosomal and symbiotic gene regions : application to Rhizobium leguminosarum and its different biovars. Applied and Environmental Microbiology 62, 2029-2036.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 2029-2036
    • Laguerre, G.1    Mavingui, P.2    Allard, M.-R.3
  • 12
    • 0002546295 scopus 로고
    • Recent developments in Rhizobium taxonomy
    • Martínez-Romero, E. (1994) Recent developments in Rhizobium taxonomy. Plant and Soil 161, 11-20.
    • (1994) Plant and Soil , vol.161 , pp. 11-20
    • Martínez-Romero, E.1
  • 13
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
    • ed. Akkermans, A.D.L., van Elsas, J.D. and de Bruijn, F.J. Dordrecht: Kluwer Academic Publishers
    • Massol-Deya, A.A., Odelson, D.A., Hickey, R.F. and Tiedje, J.M. (1995) Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). In Molecular Microbial Ecology Manual ed. Akkermans, A.D.L., van Elsas, J.D. and de Bruijn, F.J. Dordrecht: Kluwer Academic Publishers.
    • (1995) Molecular Microbial Ecology Manual
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 14
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., De Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 15
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer, G., Teske, A., Wirsen, C.O. and Jannasch, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Archives of Microbiology 164, 165-172.
    • (1995) Archives of Microbiology , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 16
    • 0022422655 scopus 로고
    • Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
    • Myers, R.M., Fischer, S.G., Lerman, L.S. and Maniatis, T. (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Research 13, 3131-3145.
    • (1985) Nucleic Acids Research , vol.13 , pp. 3131-3145
    • Myers, R.M.1    Fischer, S.G.2    Lerman, L.S.3    Maniatis, T.4
  • 17
    • 0028826010 scopus 로고
    • Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov
    • Nour, S.M., Cleyet-Marel, J.-C., Normand, P. and Fernandez, M.P. (1995) Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov. International Journal of Systematic Bacteriology 45, 640-648.
    • (1995) International Journal of Systematic Bacteriology , vol.45 , pp. 640-648
    • Nour, S.M.1    Cleyet-Marel, J.-C.2    Normand, P.3    Fernandez, M.P.4
  • 19
  • 20
    • 0024553747 scopus 로고
    • Rapid extraction of bacterial genomic DNA with guanidium thiocyanate
    • Pitcher, D.G., Saunders, N.A. and Owen, R.J. (1989) Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Letters in Applied Microbiology 8, 151-156.
    • (1989) Letters in Applied Microbiology , vol.8 , pp. 151-156
    • Pitcher, D.G.1    Saunders, N.A.2    Owen, R.J.3
  • 21
    • 0028150081 scopus 로고
    • Characterization of a Rhizobium etli chromosomal gene required for nodule development on Phaseolus vulgaris L.
    • Pooyan, S., George, M.L.C. and Borthakur, D. (1994) Characterization of a Rhizobium etli chromosomal gene required for nodule development on Phaseolus vulgaris L. World Journal of Microbiology and Biotechnology 10, 583-589.
    • (1994) World Journal of Microbiology and Biotechnology , vol.10 , pp. 583-589
    • Pooyan, S.1    George, M.L.C.2    Borthakur, D.3
  • 24
    • 0027331416 scopus 로고
    • Application of subtraction hybridization for the development of a Rhizobium leguminosarum biovar phaseoli and Rhizobium tropici group-specific DNA probe
    • Streit, W., Bjourson, A.J., Cooper, J.E. and Werner, D. (1993) Application of subtraction hybridization for the development of a Rhizobium leguminosarum biovar phaseoli and Rhizobium tropici group-specific DNA probe. FEMS Microbiology and Ecology 13, 59-68.
    • (1993) FEMS Microbiology and Ecology , vol.13 , pp. 59-68
    • Streit, W.1    Bjourson, A.J.2    Cooper, J.E.3    Werner, D.4
  • 25
  • 26
    • 0029851898 scopus 로고    scopus 로고
    • Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures
    • Teske, A., Sigalevich, P., Cohen, Y. and Muyzer, G. (1996) Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures. Applied and Environmental Microbiology 62, 4210-4215.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 4210-4215
    • Teske, A.1    Sigalevich, P.2    Cohen, Y.3    Muyzer, G.4
  • 27
    • 0030698675 scopus 로고    scopus 로고
    • Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs
    • Vallaeys, T., Topp, E., Muyzer, G. et al. (1997) Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs. FEMS Microbiology and Ecology: 24, 279-285.
    • (1997) FEMS Microbiology and Ecology , vol.24 , pp. 279-285
    • Vallaeys, T.1    Topp, E.2    Muyzer, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.