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1
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0344201146
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TREEMOMENT and PILEUPMOMENT
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TREEMOMENT and PILEUPMOMENT programs are available at: http://www-biology.ucsd.edu/~msaier/methods
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2
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0029813032
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Membrane topology and multimeric structure of a mechanosensitive channel protein of Escherichia coli
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Blount, P., Sukharev, S. I., Moe, P. C., Schroeder, M. J., Guy, H. R. and Kung, C., 1996a, Membrane topology and multimeric structure of a mechanosensitive channel protein of Escherichia coli. EMBO Journal, 15, 4798-4805.
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EMBO Journal
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Blount, P.1
Sukharev, S.I.2
Moe, P.C.3
Schroeder, M.J.4
Guy, H.R.5
Kung, C.6
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3
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0029909197
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Single residue substitutions that change the gating properties of a mechanosensitive channel in Escherichia coli
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Blount, P., Sukharev, S. I., Schroeder, M. J., Nagle, S. K. and Kung, C., 1996b, Single residue substitutions that change the gating properties of a mechanosensitive channel in Escherichia coli. Proceedings of the National Academy of Science USA, 93, 11652-11657.
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Proceedings of the National Academy of Science USA
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, pp. 11652-11657
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Blount, P.1
Sukharev, S.I.2
Schroeder, M.J.3
Nagle, S.K.4
Kung, C.5
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4
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0021760092
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A comprehensive set of sequence analyses for the VAX
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Devereux, J., Haeberli, P. and Smithies, N. O., 1984, A comprehensive set of sequence analyses for the VAX. Nucleic Acids Research, 12, 387-395.
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Nucleic Acids Research
, vol.12
, pp. 387-395
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Devereux, J.1
Haeberli, P.2
Smithies, N.O.3
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5
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0021152462
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Three-dimensional structure of membrane and surface proteins
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Eisenberg, D., 1984, Three-dimensional structure of membrane and surface proteins. Annual Review of Biochemistry, 53, 595-623.
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(1984)
Annual Review of Biochemistry
, vol.53
, pp. 595-623
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Eisenberg, D.1
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6
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0019934717
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The helical hydrophobic moment: A measure of the amphipathicity of a helix
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Eisenberg, D., Weiss, W. M. and Terwilliger, T. C., 1982, The helical hydrophobic moment: a measure of the amphipathicity of a helix. Nature (London), 299, 371-374.
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Nature (London)
, vol.299
, pp. 371-374
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Eisenberg, D.1
Weiss, W.M.2
Terwilliger, T.C.3
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7
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0029281840
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Topological and segmental phylogenetic analyses of the anion exchanger (band 3) family of transporters
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Espanol, M. J. and Saier, M. H., Jr., 1995, Topological and segmental phylogenetic analyses of the anion exchanger (band 3) family of transporters. Molecular Membrane Biology, 12, 193-200.
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(1995)
Molecular Membrane Biology
, vol.12
, pp. 193-200
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Espanol, M.J.1
Saier M.H., Jr.2
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8
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0025025261
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Progressive alignment and phylogenetic tree construction of protein sequences
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Feng, D.-F. and Doolittle, R. F., 1990, Progressive alignment and phylogenetic tree construction of protein sequences. Methods of Enzymology, 183, 375-387.
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(1990)
Methods of Enzymology
, vol.183
, pp. 375-387
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Feng, D.-F.1
Doolittle, R.F.2
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9
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0029810929
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Use of phoA and lacZ fusions to study the membrane topology of ProW, a component of the osmoregulated ProU transport system of Escherichia coli
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Haardt, M. and Bremer, E., 1996, Use of phoA and lacZ fusions to study the membrane topology of ProW, a component of the osmoregulated ProU transport system of Escherichia coli. Journal of Bacteriology, 178, 5370-5381.
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(1996)
Journal of Bacteriology
, vol.178
, pp. 5370-5381
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Haardt, M.1
Bremer, E.2
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10
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0025914739
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The bacterial porin superfamily: Sequence alignment and structure prediction
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Jeanteur, D., Lakey, J. H. and Pattus, F., 1991, The bacterial porin superfamily: sequence alignment and structure prediction. Molecular Microbiology, 5, 2153-2164.
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(1991)
Molecular Microbiology
, vol.5
, pp. 2153-2164
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Jeanteur, D.1
Lakey, J.H.2
Pattus, F.3
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11
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0020475449
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A simple method for displaying the hydropathic character of a protein
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Kyte, J. and Doolittle, R. F., 1982, A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology, 157, 105-132.
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(1982)
Journal of Molecular Biology
, vol.157
, pp. 105-132
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Kyte, J.1
Doolittle, R.F.2
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12
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0030688998
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A novel family of channel-forming, autotransporting, bacterial virulence factors
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Loveless, B. J. and Saier, M. H., Jr., 1997, A novel family of channel-forming, autotransporting, bacterial virulence factors. Molecular Membrane Biology, 14, 113-123.
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(1997)
Molecular Membrane Biology
, vol.14
, pp. 113-123
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Loveless, B.J.1
Saier M.H., Jr.2
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13
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0031888525
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Major facilitator superfamily
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Pao, S. S., Paulsen, I. T. and Saier, M. H., Jr., 1998, Major facilitator superfamily. Microbiology and Molecular Biology Review, 62, 1-32.
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(1998)
Microbiology and Molecular Biology Review
, vol.62
, pp. 1-32
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Pao, S.S.1
Paulsen, I.T.2
Saier M.H., Jr.3
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14
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0029910115
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Phylogenetic characterization of the MIP family of transmembrane channel proteins
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Park, J. H. and Saier, M. H., Jr., 1996, Phylogenetic characterization of the MIP family of transmembrane channel proteins. Journal of Membrane Biology, 153, 171-180.
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(1996)
Journal of Membrane Biology
, vol.153
, pp. 171-180
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Park, J.H.1
Saier M.H., Jr.2
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15
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0027291428
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Phosphoenolpyruvate:Carbohydrate phosphotransferase systems of bacteria
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Postma, P. W., Lengeler, J. W. and Jacobsen, G. R., 1993, Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. Microbiological Reviews, 57, 543-594.
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(1993)
Microbiological Reviews
, vol.57
, pp. 543-594
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Postma, P.W.1
Lengeler, J.W.2
Jacobsen, G.R.3
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16
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0024346677
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Hydrophobic organization of membrane proteins
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Rees, D. C., DeAntonio, L. and Eisenberg, D., 1989, Hydrophobic organization of membrane proteins. Science, 245, 510-513.
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(1989)
Science
, vol.245
, pp. 510-513
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Rees, D.C.1
DeAntonio, L.2
Eisenberg, D.3
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17
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0029999541
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Proposed topology of the glucitol permeases of Escherichia coli and clostridium acetobutylicum
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Reizer, J., Mitchell, W. J., Minton, N., Brehm, J., Reizer, A. and Saier, M. H., Jr., 1996, Proposed topology of the glucitol permeases of Escherichia coli and Clostridium acetobutylicum. Current Microbiology, 33, 331-333.
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(1996)
Current Microbiology
, vol.33
, pp. 331-333
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Reizer, J.1
Mitchell, W.J.2
Minton, N.3
Brehm, J.4
Reizer, A.5
Saier M.H., Jr.6
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18
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0023920458
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Mitochondrial presequences
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Roise, D. and Schatz, G., 1988, Mitochondrial presequences. Journal of Biological Chemistry, 263, 4509-4511.
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(1988)
Journal of Biological Chemistry
, vol.263
, pp. 4509-4511
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Roise, D.1
Schatz, G.2
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19
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0024003726
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Statistical and functional analyses of viral and cellular proteins with N-terminal amphipathic α-helices with large hydrophobic moments: Importance to macro-molecular recognition and organelle targeting
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Saier, M. H., Jr. and McCaldon, P., 1988, Statistical and functional analyses of viral and cellular proteins with N-terminal amphipathic α-helices with large hydrophobic moments: importance to macro-molecular recognition and organelle targeting. Journal of Bacteriology, 170, 2296-2300.
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(1988)
Journal of Bacteriology
, vol.170
, pp. 2296-2300
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Saier M.H., Jr.1
McCaldon, P.2
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20
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0026546539
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Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:Sugar phosphotransferase system
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Saier, M. H., Jr. and Reizer, J., 1992, Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:sugar phosphotransferase system. Journal of Bacteriology, 174, 1433-1438.
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(1992)
Journal of Bacteriology
, vol.174
, pp. 1433-1438
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Saier M.H., Jr.1
Reizer, J.2
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21
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0024430493
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Insertion of proteins into bacterial membranes: Mechanism, characteristics, and comparisons with the eukaryotic process
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Saier, M. H., Jr., Werner, P. K. and Müller, M., 1989, Insertion of proteins into bacterial membranes: mechanism, characteristics, and comparisons with the eukaryotic process. Microbiological Reviews, 53, 333-366.
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(1989)
Microbiological Reviews
, vol.53
, pp. 333-366
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Saier M.H., Jr.1
Werner, P.K.2
Müller, M.3
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22
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0023870508
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Sugar permeases of the bacterial phosphoenolpyruvate-dependent phosphotransferase system: Sequence comparisons
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Saier, M. H., Jr., Yamada, M., Erni, B., Suda, K., Lengeler, J., Ebner, R., Argos, P., Rak, B., Schnetz, K., Lee, C. A., Stewart, G. C., Breidt, F., Jr., Waygood, E. B., Peri, K. G. and Doolittle, R. F., 1988b, Sugar permeases of the bacterial phosphoenolpyruvate-dependent phosphotransferase system: sequence comparisons. FASEB Journal, 2, 199-208.
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(1988)
FASEB Journal
, vol.2
, pp. 199-208
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Saier M.H., Jr.1
Yamada, M.2
Erni, B.3
Suda, K.4
Lengeler, J.5
Ebner, R.6
Argos, P.7
Rak, B.8
Schnetz, K.9
Lee, C.A.10
Stewart, G.C.11
Breidt F., Jr.12
Waygood, E.B.13
Peri, K.G.14
Doolittle, R.F.15
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23
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0024241440
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Bacterial proteins with N-terminal leader sequences resembling mitochondrial targeting sequences of eukaryotes
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Saier, M. H., Jr., Yamada, M., Suda, K., Erni, B., Rak, B., Lengeler, J., Stewart, G. C., Waygood, E. B. and Rapoport, G., 1988a, Bacterial proteins with N-terminal leader sequences resembling mitochondrial targeting sequences of eukaryotes. Biochimie, 70, 1743-1748.
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(1988)
Biochimie
, vol.70
, pp. 1743-1748
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Saier M.H., Jr.1
Yamada, M.2
Suda, K.3
Erni, B.4
Rak, B.5
Lengeler, J.6
Stewart, G.C.7
Waygood, E.B.8
Rapoport, G.9
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24
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0023277329
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17th Sir Hans Krebs lecture. Signals guiding proteins to specific intramitochondrial locations
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Schatz, G., 1987, 17th Sir Hans Krebs Lecture. Signals guiding proteins to specific intramitochondrial locations. European Journal of Biochemistry, 165, 1-6.
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(1987)
European Journal of Biochemistry
, vol.165
, pp. 1-6
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Schatz, G.1
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25
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0030220261
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Porins: General to specific, native to engineered passive pores
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Schulz, G. E., 1996, Porins: general to specific, native to engineered passive pores. Current Opinion in Structural Biology, 6, 485-490.
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(1996)
Current Opinion in Structural Biology
, vol.6
, pp. 485-490
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Schulz, G.E.1
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26
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0024503511
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Membrane incorporation and induction of secondary structure of synthetic peptides corresponding to the N-terminal signal sequences of the glucitol and mannitol permeases of Escherichia coli
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Tamm, L. K., Tomich, J. M. and Saier, M. H., Jr., 1989, Membrane incorporation and induction of secondary structure of synthetic peptides corresponding to the N-terminal signal sequences of the glucitol and mannitol permeases of Escherichia coli. Journal of Biological Chemistry, 264, 2587-2592.
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(1989)
Journal of Biological Chemistry
, vol.264
, pp. 2587-2592
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Tamm, L.K.1
Tomich, J.M.2
Saier M.H., Jr.3
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27
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0031834557
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A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052
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Tangney, M., Brehm, J. K., Minton N. P., Mitchell, W. J., 1998, A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052. Applied and Enviromental Microbiology, 64, 1612-1619.
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(1998)
Applied and Enviromental Microbiology
, vol.64
, pp. 1612-1619
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Tangney, M.1
Brehm, J.K.2
Minton, N.P.3
Mitchell, W.J.4
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28
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0029944190
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A simple flexible program for the computational analysis of amino acyl residue distribution in proteins: Application to the distribution of aromatic versus aliphatic hydrophobic amino acids in transmembrane χ-helical spanners of integral membrane transport proteins
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Tsang, S. and Saier, M. H., Jr., 1996, A simple flexible program for the computational analysis of amino acyl residue distribution in proteins: application to the distribution of aromatic versus aliphatic hydrophobic amino acids in transmembrane χ-helical spanners of integral membrane transport proteins. Journal of Computational Biology, 3, 185-190.
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(1996)
Journal of Computational Biology
, vol.3
, pp. 185-190
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Tsang, S.1
Saier M.H., Jr.2
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29
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0023664370
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Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon
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Yamada, M. and Saier, M. H., Jr., 1987, Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon. Journal of Biological Chemistry, 262, 5455-5463.
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(1987)
Journal of Biological Chemistry
, vol.262
, pp. 5455-5463
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Yamada, M.1
Saier M.H., Jr.2
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30
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0026056338
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Insertion of the mannitol permease into the membrane of Escherichia coli. Possible involvement of an N-terminal amphiphilic sequence
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Yamada, Y., Chang, Y.-Y., Daniels, G. A., Wu, L.-F., Tomich, J. M , Yamada, M. and Saier, M. H., Jr., 1991, Insertion of the mannitol permease into the membrane of Escherichia coli. Possible involvement of an N-terminal amphiphilic sequence. Journal of Biological Chemistry, 266, 17863-17871.
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(1991)
Journal of Biological Chemistry
, vol.266
, pp. 17863-17871
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Yamada, Y.1
Chang, Y.-Y.2
Daniels, G.A.3
Wu, L.-F.4
Tomich, J.M.5
Yamada, M.6
Saier M.H., Jr.7
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31
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0026670486
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Metal-tetracycline/ H+ antiporter of Escherichia coli encoded by a transposon, Tn10. The role of a conserved sequence motif, GXXXXRXGRR, in a putative cytoplasmic loop between helices 2 and 3
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Yamaguchi, A., Someya, Y. and Sawai, T., 1992, Metal-tetracycline/ H+ antiporter of Escherichia coli encoded by a transposon, Tn10. The role of a conserved sequence motif, GXXXXRXGRR, in a putative cytoplasmic loop between helices 2 and 3. Journal of Biological Chemistry, 267, 19155-19162.
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(1992)
Journal of Biological Chemistry
, vol.267
, pp. 19155-19162
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Yamaguchi, A.1
Someya, Y.2
Sawai, T.3
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