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Volumn 16, Issue 2, 1999, Pages 173-179

Flexible programs for the prediction of average amphipathicity of multiply aligned homologous proteins: Application to integral membrane transport proteins

Author keywords

Average amphipathicity; Computer programs; Membrane transport proteins; Multiple alignment; Protein structure

Indexed keywords

ANTIPORTER; CARRIER PROTEIN; PERMEASE;

EID: 0033021324     PISSN: 09687688     EISSN: None     Source Type: Journal    
DOI: 10.1080/096876899294634     Document Type: Article
Times cited : (22)

References (31)
  • 1
    • 0344201146 scopus 로고    scopus 로고
    • TREEMOMENT and PILEUPMOMENT
    • TREEMOMENT and PILEUPMOMENT programs are available at: http://www-biology.ucsd.edu/~msaier/methods
  • 2
    • 0029813032 scopus 로고    scopus 로고
    • Membrane topology and multimeric structure of a mechanosensitive channel protein of Escherichia coli
    • Blount, P., Sukharev, S. I., Moe, P. C., Schroeder, M. J., Guy, H. R. and Kung, C., 1996a, Membrane topology and multimeric structure of a mechanosensitive channel protein of Escherichia coli. EMBO Journal, 15, 4798-4805.
    • (1996) EMBO Journal , vol.15 , pp. 4798-4805
    • Blount, P.1    Sukharev, S.I.2    Moe, P.C.3    Schroeder, M.J.4    Guy, H.R.5    Kung, C.6
  • 5
    • 0021152462 scopus 로고
    • Three-dimensional structure of membrane and surface proteins
    • Eisenberg, D., 1984, Three-dimensional structure of membrane and surface proteins. Annual Review of Biochemistry, 53, 595-623.
    • (1984) Annual Review of Biochemistry , vol.53 , pp. 595-623
    • Eisenberg, D.1
  • 6
    • 0019934717 scopus 로고
    • The helical hydrophobic moment: A measure of the amphipathicity of a helix
    • Eisenberg, D., Weiss, W. M. and Terwilliger, T. C., 1982, The helical hydrophobic moment: a measure of the amphipathicity of a helix. Nature (London), 299, 371-374.
    • (1982) Nature (London) , vol.299 , pp. 371-374
    • Eisenberg, D.1    Weiss, W.M.2    Terwilliger, T.C.3
  • 7
    • 0029281840 scopus 로고
    • Topological and segmental phylogenetic analyses of the anion exchanger (band 3) family of transporters
    • Espanol, M. J. and Saier, M. H., Jr., 1995, Topological and segmental phylogenetic analyses of the anion exchanger (band 3) family of transporters. Molecular Membrane Biology, 12, 193-200.
    • (1995) Molecular Membrane Biology , vol.12 , pp. 193-200
    • Espanol, M.J.1    Saier M.H., Jr.2
  • 8
    • 0025025261 scopus 로고
    • Progressive alignment and phylogenetic tree construction of protein sequences
    • Feng, D.-F. and Doolittle, R. F., 1990, Progressive alignment and phylogenetic tree construction of protein sequences. Methods of Enzymology, 183, 375-387.
    • (1990) Methods of Enzymology , vol.183 , pp. 375-387
    • Feng, D.-F.1    Doolittle, R.F.2
  • 9
    • 0029810929 scopus 로고    scopus 로고
    • Use of phoA and lacZ fusions to study the membrane topology of ProW, a component of the osmoregulated ProU transport system of Escherichia coli
    • Haardt, M. and Bremer, E., 1996, Use of phoA and lacZ fusions to study the membrane topology of ProW, a component of the osmoregulated ProU transport system of Escherichia coli. Journal of Bacteriology, 178, 5370-5381.
    • (1996) Journal of Bacteriology , vol.178 , pp. 5370-5381
    • Haardt, M.1    Bremer, E.2
  • 10
    • 0025914739 scopus 로고
    • The bacterial porin superfamily: Sequence alignment and structure prediction
    • Jeanteur, D., Lakey, J. H. and Pattus, F., 1991, The bacterial porin superfamily: sequence alignment and structure prediction. Molecular Microbiology, 5, 2153-2164.
    • (1991) Molecular Microbiology , vol.5 , pp. 2153-2164
    • Jeanteur, D.1    Lakey, J.H.2    Pattus, F.3
  • 11
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte, J. and Doolittle, R. F., 1982, A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology, 157, 105-132.
    • (1982) Journal of Molecular Biology , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 12
    • 0030688998 scopus 로고    scopus 로고
    • A novel family of channel-forming, autotransporting, bacterial virulence factors
    • Loveless, B. J. and Saier, M. H., Jr., 1997, A novel family of channel-forming, autotransporting, bacterial virulence factors. Molecular Membrane Biology, 14, 113-123.
    • (1997) Molecular Membrane Biology , vol.14 , pp. 113-123
    • Loveless, B.J.1    Saier M.H., Jr.2
  • 14
    • 0029910115 scopus 로고    scopus 로고
    • Phylogenetic characterization of the MIP family of transmembrane channel proteins
    • Park, J. H. and Saier, M. H., Jr., 1996, Phylogenetic characterization of the MIP family of transmembrane channel proteins. Journal of Membrane Biology, 153, 171-180.
    • (1996) Journal of Membrane Biology , vol.153 , pp. 171-180
    • Park, J.H.1    Saier M.H., Jr.2
  • 15
    • 0027291428 scopus 로고
    • Phosphoenolpyruvate:Carbohydrate phosphotransferase systems of bacteria
    • Postma, P. W., Lengeler, J. W. and Jacobsen, G. R., 1993, Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. Microbiological Reviews, 57, 543-594.
    • (1993) Microbiological Reviews , vol.57 , pp. 543-594
    • Postma, P.W.1    Lengeler, J.W.2    Jacobsen, G.R.3
  • 16
    • 0024346677 scopus 로고
    • Hydrophobic organization of membrane proteins
    • Rees, D. C., DeAntonio, L. and Eisenberg, D., 1989, Hydrophobic organization of membrane proteins. Science, 245, 510-513.
    • (1989) Science , vol.245 , pp. 510-513
    • Rees, D.C.1    DeAntonio, L.2    Eisenberg, D.3
  • 17
    • 0029999541 scopus 로고    scopus 로고
    • Proposed topology of the glucitol permeases of Escherichia coli and clostridium acetobutylicum
    • Reizer, J., Mitchell, W. J., Minton, N., Brehm, J., Reizer, A. and Saier, M. H., Jr., 1996, Proposed topology of the glucitol permeases of Escherichia coli and Clostridium acetobutylicum. Current Microbiology, 33, 331-333.
    • (1996) Current Microbiology , vol.33 , pp. 331-333
    • Reizer, J.1    Mitchell, W.J.2    Minton, N.3    Brehm, J.4    Reizer, A.5    Saier M.H., Jr.6
  • 19
    • 0024003726 scopus 로고
    • Statistical and functional analyses of viral and cellular proteins with N-terminal amphipathic α-helices with large hydrophobic moments: Importance to macro-molecular recognition and organelle targeting
    • Saier, M. H., Jr. and McCaldon, P., 1988, Statistical and functional analyses of viral and cellular proteins with N-terminal amphipathic α-helices with large hydrophobic moments: importance to macro-molecular recognition and organelle targeting. Journal of Bacteriology, 170, 2296-2300.
    • (1988) Journal of Bacteriology , vol.170 , pp. 2296-2300
    • Saier M.H., Jr.1    McCaldon, P.2
  • 20
    • 0026546539 scopus 로고
    • Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:Sugar phosphotransferase system
    • Saier, M. H., Jr. and Reizer, J., 1992, Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:sugar phosphotransferase system. Journal of Bacteriology, 174, 1433-1438.
    • (1992) Journal of Bacteriology , vol.174 , pp. 1433-1438
    • Saier M.H., Jr.1    Reizer, J.2
  • 21
    • 0024430493 scopus 로고
    • Insertion of proteins into bacterial membranes: Mechanism, characteristics, and comparisons with the eukaryotic process
    • Saier, M. H., Jr., Werner, P. K. and Müller, M., 1989, Insertion of proteins into bacterial membranes: mechanism, characteristics, and comparisons with the eukaryotic process. Microbiological Reviews, 53, 333-366.
    • (1989) Microbiological Reviews , vol.53 , pp. 333-366
    • Saier M.H., Jr.1    Werner, P.K.2    Müller, M.3
  • 23
    • 0024241440 scopus 로고
    • Bacterial proteins with N-terminal leader sequences resembling mitochondrial targeting sequences of eukaryotes
    • Saier, M. H., Jr., Yamada, M., Suda, K., Erni, B., Rak, B., Lengeler, J., Stewart, G. C., Waygood, E. B. and Rapoport, G., 1988a, Bacterial proteins with N-terminal leader sequences resembling mitochondrial targeting sequences of eukaryotes. Biochimie, 70, 1743-1748.
    • (1988) Biochimie , vol.70 , pp. 1743-1748
    • Saier M.H., Jr.1    Yamada, M.2    Suda, K.3    Erni, B.4    Rak, B.5    Lengeler, J.6    Stewart, G.C.7    Waygood, E.B.8    Rapoport, G.9
  • 24
    • 0023277329 scopus 로고
    • 17th Sir Hans Krebs lecture. Signals guiding proteins to specific intramitochondrial locations
    • Schatz, G., 1987, 17th Sir Hans Krebs Lecture. Signals guiding proteins to specific intramitochondrial locations. European Journal of Biochemistry, 165, 1-6.
    • (1987) European Journal of Biochemistry , vol.165 , pp. 1-6
    • Schatz, G.1
  • 25
    • 0030220261 scopus 로고    scopus 로고
    • Porins: General to specific, native to engineered passive pores
    • Schulz, G. E., 1996, Porins: general to specific, native to engineered passive pores. Current Opinion in Structural Biology, 6, 485-490.
    • (1996) Current Opinion in Structural Biology , vol.6 , pp. 485-490
    • Schulz, G.E.1
  • 26
    • 0024503511 scopus 로고
    • Membrane incorporation and induction of secondary structure of synthetic peptides corresponding to the N-terminal signal sequences of the glucitol and mannitol permeases of Escherichia coli
    • Tamm, L. K., Tomich, J. M. and Saier, M. H., Jr., 1989, Membrane incorporation and induction of secondary structure of synthetic peptides corresponding to the N-terminal signal sequences of the glucitol and mannitol permeases of Escherichia coli. Journal of Biological Chemistry, 264, 2587-2592.
    • (1989) Journal of Biological Chemistry , vol.264 , pp. 2587-2592
    • Tamm, L.K.1    Tomich, J.M.2    Saier M.H., Jr.3
  • 27
    • 0031834557 scopus 로고    scopus 로고
    • A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052
    • Tangney, M., Brehm, J. K., Minton N. P., Mitchell, W. J., 1998, A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052. Applied and Enviromental Microbiology, 64, 1612-1619.
    • (1998) Applied and Enviromental Microbiology , vol.64 , pp. 1612-1619
    • Tangney, M.1    Brehm, J.K.2    Minton, N.P.3    Mitchell, W.J.4
  • 28
    • 0029944190 scopus 로고    scopus 로고
    • A simple flexible program for the computational analysis of amino acyl residue distribution in proteins: Application to the distribution of aromatic versus aliphatic hydrophobic amino acids in transmembrane χ-helical spanners of integral membrane transport proteins
    • Tsang, S. and Saier, M. H., Jr., 1996, A simple flexible program for the computational analysis of amino acyl residue distribution in proteins: application to the distribution of aromatic versus aliphatic hydrophobic amino acids in transmembrane χ-helical spanners of integral membrane transport proteins. Journal of Computational Biology, 3, 185-190.
    • (1996) Journal of Computational Biology , vol.3 , pp. 185-190
    • Tsang, S.1    Saier M.H., Jr.2
  • 29
    • 0023664370 scopus 로고
    • Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon
    • Yamada, M. and Saier, M. H., Jr., 1987, Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon. Journal of Biological Chemistry, 262, 5455-5463.
    • (1987) Journal of Biological Chemistry , vol.262 , pp. 5455-5463
    • Yamada, M.1    Saier M.H., Jr.2
  • 30
    • 0026056338 scopus 로고
    • Insertion of the mannitol permease into the membrane of Escherichia coli. Possible involvement of an N-terminal amphiphilic sequence
    • Yamada, Y., Chang, Y.-Y., Daniels, G. A., Wu, L.-F., Tomich, J. M , Yamada, M. and Saier, M. H., Jr., 1991, Insertion of the mannitol permease into the membrane of Escherichia coli. Possible involvement of an N-terminal amphiphilic sequence. Journal of Biological Chemistry, 266, 17863-17871.
    • (1991) Journal of Biological Chemistry , vol.266 , pp. 17863-17871
    • Yamada, Y.1    Chang, Y.-Y.2    Daniels, G.A.3    Wu, L.-F.4    Tomich, J.M.5    Yamada, M.6    Saier M.H., Jr.7
  • 31
    • 0026670486 scopus 로고
    • Metal-tetracycline/ H+ antiporter of Escherichia coli encoded by a transposon, Tn10. The role of a conserved sequence motif, GXXXXRXGRR, in a putative cytoplasmic loop between helices 2 and 3
    • Yamaguchi, A., Someya, Y. and Sawai, T., 1992, Metal-tetracycline/ H+ antiporter of Escherichia coli encoded by a transposon, Tn10. The role of a conserved sequence motif, GXXXXRXGRR, in a putative cytoplasmic loop between helices 2 and 3. Journal of Biological Chemistry, 267, 19155-19162.
    • (1992) Journal of Biological Chemistry , vol.267 , pp. 19155-19162
    • Yamaguchi, A.1    Someya, Y.2    Sawai, T.3


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