Taxonomic study of bacteria isolated from natural mineral waters: Proposal of Pseudomonas jessenii sp. nov. and Pseudomonas mandelii sp. nov.

Systematic and Applied Microbiology

Volumn 22, Issue 1, 1999, Pages 45-58

  Verhille, S ^a   Baida, N ^a   Dabboussi, F ^a   Izard, D ^a   Leclerc, H ^a  

^a UNIV LILLE   (France)

Author keywords

16S rDNA; DNA DNA hybridization; Pseudomonas jessenii; Pseudomonas mandelii; Taxonomy; Water

Indexed keywords

ARYL ACYLAMIDASE; BACTERIAL DNA; BACTERIAL ENZYME; DNA; MINERAL WATER; RIBOSOME DNA;

ARTICLE; BACTERIAL GROWTH; CELL STRUCTURE; CONTROLLED STUDY; DENITRIFICATION; DNA DNA HYBRIDIZATION; DNA SEQUENCE; ELECTRON MICROSCOPY; ENZYME ACTIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS; SEQUENCE HOMOLOGY; TAXONOMY;

ACIDAMINOCOCCACEAE; BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS JESSENII; PSEUDOMONAS MANDELII;

EID: 0033021011     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0723-2020(99)80027-7     Document Type: Article

References (40)

1. AMANN, R., LUDWIG, W., SCHULZE, R., SPRING, S., MOORE, E., SCHLEIFER, K. H.: rRNA-targeted oligonucleotide probes for identification of guenine and former pseudomonads. System. Appl. Microbiol. 19, 501-509 (1996).
2. ANZAI, Y., KUDO, Y., OYAIZU, H.: The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. Int. J. Syst. Bacteriol. 47, 249-251 (1997).
3. BALDANI, J. I., BALDANI, V. L. D., OLIVARES, F. L., KIRCHHOF, G., HARTMANN, A., POT, B., HOSTE, B., FALSEN, E., KERSTERS, K., GILLIS, M., DOBEREINER, J.: Emended description of Herbaspirillum, inclusion of [Pseudomonas] rubisubalbicans, a mild plant pathogen as Herbaspirillum rubrisubalbicans comb. nov., and classification of a group of clinical isolates (EF group I ) as Herbaspirillum species 3. Int. Syst. Bacteriol. 46, 802-810 (1996).
4. BEJI, A., IZARD, D., GAVINI, F., LECLERC, H., LESEINE-DELSTANCHE, M., KREMBEL, J.: A rapid chemical procedure for isolation and purification of chromosomal DNA from Gram-negative bacilli. Anal. Biochem. 162, 18-23 (1987).
5. BOWMAN, J. P., SLY, L. I., HAYWARD, A. C., SPIEGEL, Y., STACKEBRANDT, E.: Telluria mixta (Pseudomonas mixta BOWMAN, SLY and HAYWARD 1988) gen. nov., comb. nov., and Telluria chitinolytica sp. nov., soil-dwelling organisms which actively degrade polysaccharides. Int. J. Syst. Bacteriol. 43, 120-124 (1993)
6. BOIVIN-JAHNS, V., BIANCHI, A., RUIMY, R., DAUMAS, S., CHRISTEN, R.: Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment. Appl. Environ. Microbiol. 61, 3400-3406 (1995).
7. BRENNER, D. J., STEIGERWALT, A. G., FANNING, G. R.: Differentiation of Enterobacter aerogenes from Klebsiellae by deoxyribonucleic acid reassociation. Int. Syst. Bacteriol. 22, 193-200 (1972).
8. COROLER, L., ELOMARI, M., HOSTE, R., GILLIS, M., IZARD, D., LECLERC, H.: Pseudomonas rhodesiae sp. nov., a new species isolated from natural mineral waters. System. Appl. Microbiol. 19, 600-607 (1996).
9. CROSA, J. H., BRENNER, D. J., FALKOW, S.: Use of a single-strand specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homo- and heteroduplexes. J. Bacteriol. 115, 904-911 (1973).
10. DE LEY, J.: Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J. Bacteriol. 101, 737-754 (1970).
11. DE VOS, P., DE LEY, J.: Intra- and intergeneric similarities of Pseudomonas and Xanthomonas ribosomal rihonucleic acid citrons. Int. J. Syst. Bacteriol. 33, 487-509 (1983).
12. DE VOS, P., KERSTERS, K., FALSEN, E., POT, B., GILLIS, M., SEGERS, P., DE LEY, J.: Comamonas DAVIS and PARK 1962 gen. nov., nom. rev. emend, and Comamonas terrigena HUGH 1962 sp. nov., nom. rev. Int. J. Syst. Bacteriol. 35, 443-453 (1985).
13. EDWARDS, U., ROGALI, T., BIÖCKER, H., EMDE, M., BÖTTGER, E.: Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acid Res. 17, 7843-7853 (1989).
14. ELOMARI, M., COROLER, L., HOSTE, B., GILLIS, M., IZARD, D., LECLERC, H.: DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov. Int. J. Syst. Bacteriol. 46, 1138-1144 (1996).
15. ELOMARI, M., COROLER, L., VERHILLE, S., IZARD, D., LECLERC, H.: Pseudomonas monteilii sp. nov., isolated from clinical specimens. Int. J. Syst. Bacteriol. 47, 846-852 (1997).
16. FOX, G. E., WISOTZKEY, J. D., JURTSHUK, P.: How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170 (1992).
17. GOULD, W. D., HAGEDORN, C., BARDINELLI, T. R., ZABLOTOW, R. H.: New selective media for enumeration and recovery of fluorescent pseudomonads from various habitats. Appl. Environm. Microbiol. 49 , 28-32 (1985).
18. GRIMONT, P. A. D., POPOFF, M. Y., GRIMONT, F., COYNAULT, C., LEMELIN, M.: Reproducibility and correlation study of three deoxyribonucleic acid hybridization procedures. Curr. Microbiol. 4, 325-330 (1980).
19. HOLMES, B., STEIGERWALT, A. G., WEAVER, R. E., BRENNER, D. J.: Chryseomonas Iuteola comb. nov. and Flavimonas oryzihabitans gen. nov., comb. nov., Pseudomonas-like species from human clinical specimens and formerly known, respectively, as groups Ve-1 and Ve-2. Int. J. Syst. Bacteriol. 37, 245-250 (1987).
20. HOENIGER, J. F. M.: Development of flagella by Proteus mirabilis. J. Gen. Microbiol. 40, 29-33 (1965).
21. JESSEN, O.: Pseudomonas aeruginosa and other green fluorescent pseudomonads. A taxonomic study, pp. 1-244. Munksgaard, Copenhagen (1965).
22. KERSTERS, K., LUDWID, W., VANCANNEYT, M., DE VOS, P., GILLIS, M., SCHLEIFER, K. H.: Recent changes in the classification of the pseudomonads: an overview. System. Appl. Microbiol. 19, 465-477 (1996).
23. MANDEL, M.: Deoxyribonucleic acid base composition in the genus Pseudomonas. J. Gen. Microbiol. 43, 273-292 (1966).
24. T to Zavarzinia gen. nov., as Zavarzinia compransoris, comb., nov., and emended descriptions of the new genera. Syst. Appl. Microbiol. 16, 390-395 (1993).
25. MOORE, E. R. B., MAU, M., ARNSCHEIDT, A., BÖTTGER, E. C., HUTSON, R. A., COLLINS, M. D., VAN DE PEER, Y., DE WATCHER, R., TIMMIS, K. N.: The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships. System. Appl. Microbiol. 19, 478-492 (1996).
26. PALLERONI, N. J., KUNISAWA, R., CONTOPOULOU, R., DOUDOROFF, M.: Nucleic acid homologies in the genus Pseudomonas. Int. J. Syst. Bacteriol. 23, 333-339 (1973).
27. A1, pp. 141-199. In Bergey's manual of systematic bacteriology, vol. 1. (N. R. KRIEG and J. G. HOLT, ed.). Baltimore, Williams and Wilkins 1984.
28. PALLERONI, N. J., BRABDURY, J. F.: Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (HUGH 1980) SWINGS et al., 1983. Int. J. Syst. Bacteriol. 43, 606-609 (1993).
29. SAITOU, N., NEI, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
30. SERGERS, P., VANCANNEYT, M., POT, B., TORCK, U., HOSTE, B., DEWETTINCK, D., FALSEN, E., KERSTERS, K., DE VOS, P.: Classification of Pseudomonas diminuta LEIFSON and HUGH 1954 and Pseudomonas vesicularis BUSING, DÖLL, and FREYTAG, 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. Int. J. Syst. Bacteriol. 44, 499-510 (1994).
31. STACKEBRANDT, E., GOEBEL, B. M.: Taxonomic note a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849 (1994).
32. URAKAMI, T., ARAKI, H., OYANAGI, H., SUZUKI, K. I., KOMAGATA, K.: Transfer of Pseudomonas aminovorans (DEN DOOREN DE JONG 1926) to Aminobacter gen. nov. as Aminobacter aminovorans comb. nov. and description of Aminobacter aganoensis sp. nov. and Aminobacter niigataensis sp. nov. Int. J. Syst. Bacteriol. 42, 84-92 (1992).
33. VANDAMME P., POT, B., GILLIS, M., DE VOS, P., KERSTERS, K., SWINGS, J.: Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 60, 407-438 (1996).
34. VERHILLE, S., ELOMARI, M., COROLER, I., IZARD, D., LECLERC, H.: Phenotypically based taxonomy of fluorescent Pseudomonas strains isolated from four natural mineral waters. Syst. Appl. Microbiol. 20, 137-149 (1997).
35. WAYNE, L. G., BRENNER, D. J., COLWELL, R. R., GRIMONT, P. A. D., KANDLER, O., KRICHEVSKY, M. L., MOORE, L. H., MOORE, W. H. C., MURRAY, R. G. E., STACKEBRANDT, E., STARR, M. P., TRÜPER, H. G.: Report of the Ad Hoc Committee on the reconciliation of approaches to bacterial systematics. Int. J. Syste. Bacteriol. 37, 463-464 (1987).
36. WILLEMS, A., BUSSE, J., GOOR, M., POT, B., FALSEN, E., JANTZEN, E., HOSTE, B., GILLIS, M., KERSTERS, K., AULING, G., DE LEY, J.: Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov., (formerly Pseudomonas flava), Hydrogenophaga palleronii, (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol. 39, 319-333 (1989).
37. WILLEMS, A., FALSEN, E., POT, B., JANTZEN, E., HOSTE, B., VANDAMME, P., GILLLIS, M., KERSTERS, K., DE LEY, J.: Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. FALSEN (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. Int. J. Syst. Bacteriol. 40, 384-398 (1990).
38. YABUUCHI, E., YANO, I., OYAIZU, H., HASHIMOTO, Y., EZAKI, T., YAMAMOTO, H.: Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol. Immunol. 34, 99-119 (1990).
39. YABUUCHI, E., KOSAKI, Y., YANO, I., HOTTA, H., HASHIMOTO, Y., EZAKI, T., ARAKAWA, M.: Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (PALLERONI and HOLMES 1981) comb. nov. Microbiol. Immunol. 36, 1251-1275 (1992).
40. YABUUCHI, E., KOSAKO, Y., OYAIZU, H., YANO, I., HOTTA, H., NISHIUCHI, Y: Transfer of two Burkholderia and Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (RALSTON, PALLERONI and DOUDOROFF 1973), comb. nov., Ralstonia solanacearum (SMITH 1896) comb. nov. and Ralstonia eutropha (DAVIS 1969) comb. nov. Microbiol. Immunol. 39, 897-904 (1995).