Juxtaposed microsatellite systems as diagnostic markers for admixture: Theoretical aspects

Molecular Biology and Evolution

Volumn 16, Issue 7, 1999, Pages 898-908

  Estoup, Arnaud ^a,b   Cornuet, Jean Marie ^b   Rousset, François ^c   Guyomard, René ^a  

^a CEMAGREF   (France)

^b Lab Modelisation et de Biol Evol U de Rech de Lutte Biol Inst N   (France)

^c CNRS   (France)

Author keywords

Diagnostic marker; Genetic admixture; Homoplasy; Hybridization; Linked markers; Microsatellites

Indexed keywords

MICROSATELLITE DNA;

ALLELISM; ARTICLE; DNA FLANKING REGION; GENE LOCUS; GENE MUTATION; GENE SEQUENCE; GENE STRUCTURE;

EID: 0033004829     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026179     Document Type: Article

References (46)

1. ABERNETHY, K. 1994. The establishment of a hybrid zone between red and sika deer (genus Cervus). Mol. Ecol. 3:551-562.
2. AMOS, W. 1999. A comparative approach to the study of microsatellite evolution In D. B. GOLDSTEIN and C. SCHLÖTTERER, eds. Microsatellites: evolution and applications. Oxford University Press, Oxford (in press).
3. AVISE, J. C. 1996. Introduction: the scope of conservation genetics. Pp. 1-9 in J. C. AVISE and J. L. HAMRICK, eds. Conservation genetics: case histories from Nature. Chapman and Hall, New York.
4. BERTORELLE, G., and L. EXCOFFIER. 1998. Inferring admixture proportions from molecular data. Mol. Biol. Evol. 15:1298-1311.
5. BOWCOCK, A. M., A. RUIZ-LINARES, J. TOMFOHRDE, E. MINCH, J. R. KIDD, and L. L. CAVALLI-SFORZA. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.
6. n microsatellites with degenerate sequencing primers. Nucleic Acids Res. 20:141.
7. n polymorphisms in the human dystrophin gene and their implications in carrier detection and prenatal diagnosis in Duchenne and Becker muscular dystrophies. Genomics 21:567-570.
8. DERMITZAKIS, E., A. G. CLARK, C. BATARGIAS, A. MARGOULAS, and E. ZOUROS. 1998. Negative covariance suggests mutation bias in a two-locus microsatellite system in the fish Sparus aurata. Genetics 150:1567-1575.
9. DIB, C., S. FAURÉ, C. FIZAMES et al. (14 co-authors). 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380:152-154.
10. DIETRICH, W. F., J. C. MILLER, R. G. STEEN et al. (14 co-authors). 1994. A genetic map of the mousse with 4,006 simple sequence length polymorphism. Nat. Genet. 7:220-255.
11. DIRIENZO, A., A. C. PETERSON, J. C. GARZA, A. M. VALDES, M. SLATKIN, and N. B. FREIMER. 1994. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91:3166-3170.
12. ESTOUP, A., and B. ANGERS. 1998. Microsatellites and minisatellites for molecular ecology. Pp. 55-86 in G. CARVALHO, ed. Advances in molecular ecology. IOS Press.
13. ESTOUP, A., and J.-M. CORNUET. 1999. Microsatellite evolution: inferences from population data. Pp. 50-65 in D. B. GOLDSTEIN and C. SCHLÖTTERER, eds. Microsatellites: evolution and applications. Oxford University Press, Oxford.
14. ESTOUP, A., L. GARNERY, M. SOLIGNAC, and J.-M. CORNUET. 1995. Microsatellite variation in honey bee (Apis mellifera L.) populations: hierarchical genetic structure and test of the infinite allele and stepwise mutation models. Genetics 140: 679-695.
15. ESTOUP, A., F. ROUSSET, Y. MICHALAKIS, J.-M. CORNUET, M. ADRIAMANGA, and R. GUYOMARD. 1998. Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Mol. Ecol. 7:339-353.
16. n and (CT)n microsatellites in two insect species: Apis mellifera and Bombus terrestris. Nucleic Acids Res. 21:1427-1431.
17. FELDMAN, M. W., A. BERGMAN, D. D. POLLOCK, and D. B. GOLDSTEIN. 1997. Microsatellite genetic distances with range constraints: analytic description and problems of estimation. Genetics 145:207-216.
18. GARZA, J. C., M. SLATKIN, and N. B. FREIMER. 1995. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol. Biol. Evol. 12:594-603.
19. GIUFFRA, E., R. GUYOMARD, and G. FORNERIS. 1996. Phylogenetic relationships and introgression pattern between incipient parapatric species of Italian brown trout (Salmo trutta L. complex). Mol. Ecol. 5:207-220.
20. GOLDSTEIN, D. B., A. R. LINARES, M. W. FELDMAN, and L. L. CAVALLI-SFORZA. 1995. Genetic absolute dating based on microsatellites and the origin of modern humans. Proc. Natl. Acad. Sci. USA 92:6123-6727.
21. GOLDSTEIN, D. B., and D. D. POLLOCK. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. J. Hered. 88:335-342.
22. GOOSTREY, A., D. N. CARSS, L. R. NOBLE, and S. B. PIERTNEY. 1998. Population introgression and differentiation in the great cormorant Phalacrocorax carbo in Europe. Mol. Ecol. 7:329-338.
23. GOTTELLI, D., C. SILLERO-ZUBIRI, G. D. APPLEBAUM, M. S. ROY, D. J. GIRMAN, J. GARCIA-MORENO, E. A. OSTRANDER, and R. K. WAYNE. 1994. Molecular genetics of the most endangered canid: the Ethiopian wolf Canis simensis. Mol. Ecol. 3:301-312.
24. GYLLENSTEN, U., R. F. LEARY, F. W. ALLENDORF, and A. C. WILSON. 1985. Introgression between two cutthroat subspecies with substantial karyotypic, nuclear and mitochondrial genomic divergence. Genetics 111:905-915.
25. HANTULA, J., M. DUSABENYAGASANI, and R. C. HAMELIN. 1996. Random amplified microsatellites (RAMS): a novel method for characterizing genetic variation within fungi. Eur. J. For. Pathol. 26:159-166.
26. HARE, M. P., and J. C. AVISE. 1996. Molecular genetic analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica). Evolution 50:2305-2315.
27. HARRISON, R. G. 1993. Hybrid zones and evolutionary process. Oxford University Press, Oxford.
28. KARL, A. S., and J. C. AVISE. 1992. Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs. Science 256:100-102.
29. KIMURA, M., and T. OHTA. 1978. Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc. Natl. Acad. Sci. USA 75:2868-2872.
30. LEVINSON, G., and G. A. GUTMAN. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
31. LOBO, J. A., M. A. DEL LAMA, and M. A. MESTRINER. 1989. Population differentiation and racial admixture in the Africanized honey bee (Apis mellifera L.). Evolution 43:794-802.
32. MACHUGH, D. E., M. D. SHRIVER, R. T. LOFTUS, P CUNNINGHAM, and D. G. BRADLEY. 1997. Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and Zebu cattle (Bos taurus and Bos indicus). Genetics 146:1071-1086.
33. MIRSKY, A. E., and H. RISS. 1951. The deoxyribonucleic acid content of animal cells and its evolutionary significance. J. Genet. Physiol. 34:451-462.
34. NAUTA, M. J., and F. J. WEISSING. 1996. Constraints on allele size at microsatellite loci: implications for genetic differentiation. Genetics 143:1021-1032.
35. PENA, S. D. J., K. T. DE SPUZA, M. DE ANDRADE, and R. CHAKRABORTY. 1994. Allelic associations of two polymorphic microsatellites in intro 40 of the human von Willebrand factor gene. Proc. Natl. Acad. Sci. USA 91:723-727.
36. POLLOCK, D. D., A. BERGMAN, M. W. FELDMAN, and D. B. GOLDSTEIN. 1998. Microsatellite behavior with range constraints: parameter estimation and improved distances for use in phylogenetic reconstruction. Theor. Popul. Biol. 53: 265-271.
37. POTEAUX, C., F. BONHOMME, and P. BERREBI. 1998. Differences between nuclear and mitochondrial introgressions of brown trout populations from a restocked main river and its unstocked tributary. Biol. J. Linn. Soc. 63:379-392.
38. PRIMMER, C. R., N. SAINO, A. P. MOLLER, and H. ELLEGREN. 1998. Unraveling the processes of microsatellite evolution through analysis of germline mutations in barn swallows, Hirundo rustica. Mol. Biol. Evol. 15:1047-1054.
39. RINDERER, T. E., J. A. STELZER, B. P. OLDROYD, S. M. BUCO, and W. L. RUBINK. 1991. Hybridization between European and Africanized honey bees in the Neotropical Yucatan Peninsula. Science 253:309-311.
40. ROY, M. S., E. GEFFEN, D. SMITH, E. A. OSTRANDER, and R. K. WAYNE. 1994. Pattern of differentiation and hybridization in North American wolflike canid, revealed by analysis of microsatellite loci. Mol. Biol. Evol. 11:553-570.
41. SCHLÖTTERER, C., and D. TAUTZ. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
42. SIMONSEN, K. L., G. A. CHURCHILL, and C. F. AQUADRO. 1995. Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141:413-429.
43. SOKAL, R. R., and F. J. ROHLF. 1995. Biometry. 3rd edition. Freeman, New York.
44. SPRENT, P. 1989. Applied nonparametric statistical methods. Chapman and Hall, London.
45. n microsatellites in a yellow-jacket wasp, Vespula rufa L. (Hymenoptera: Vespidae). Insect Mol. Biol. 4:141-148.
46. WEBER, J. L., and C. WONG. 1993. Mutation of human short tandem repeats. Hum. Mol. Genet. 2:1123-1128.