Studies of bovine enterovirus structure by ultraviolet resonance Raman spectroscopy

Journal of Virological Methods

Volumn 77, Issue 2, 1999, Pages 117-123

  Kaminaka, Shoji ^a   Imamura, Yoshihiro ^a   Shingu, Masahisa ^a   Kitagawa, Teizo ^b   Toyoda, Tetsuya ^a  

^a KURUME UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b INSTITUTE FOR MOLECULAR SCIENCE   (Japan)

Author keywords

Bovine enterovirus; Raman spectroscopy; Ultraviolet resonance; Uncoating

Indexed keywords

ARTICLE; ENTEROVIRUS; HEAT; NONHUMAN; PRIORITY JOURNAL; RAMAN SPECTROMETRY; VIRUS MORPHOLOGY;

ANIMALS; CAPSID; CATTLE; CELL LINE; ENTEROVIRUS; LASERS; LIGHTING; RNA, VIRAL; SPECTRUM ANALYSIS, RAMAN; ULTRAVIOLET RAYS;

BOVINAE; BOVINE ENTEROVIRUS; MIRIDAE;

EID: 0032974862     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(98)00153-0     Document Type: Article

References (41)

1. Acharya R., Fry E., Stuart D., Fox G., Rowlands D., Brown F. The three-dimensional structure of foot-and-mouth disease virus at 2.9 Å resolution. Nature (Lond.). 337:1989;709-716.
2. Aubrey K.L., Casjens S.R., Thomas G.J. Jr. Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy. Biochemistry. 31:1992;11835-11842.
3. Bamford J.K.H., Bamford D.H., Li T., Thomas G.J. Jr. Structural studies of the enveloped dsRNA bacteriophage φ of pseudomonas syringae by Raman spectroscopy. II. Nucleocapsid structure and thermostability of the virion, nucleocapsid and polymerase complex. J. Mol. Biol. 230:1993;473-482.
4. Benevides J.M., Thomas G.J. Jr. Dependence of purine 8C-H exchange on nucleic acid conformation and base-pairing geometry. A dynamic probe of DNA and RNA secondary structures. Biopolymers. 24:1985;667-682t.
5. Breindl M. The structure of heated poliovirus particles. J. Gen. Virol. 11:1971;147-156.
6. Carey P.R. Biological Applications of Raman and Resonance Raman Spectroscopies. 1982;Academic Press, New York.
7. Chow M., Newman J.F.E., Filman D., Hogle J.M., Rowlands D.J., Brown F. Myristylation of picornavirus capsid protein VP4 and its structural significance. Nature (Lond.). 327:1987;482-486.
8. Earle J.A.P., Skuce R.A., Fleming C.S., Hoey E.M., Martin S.J. The complete nucleotide sequence of a bovine enterovirus. J. Gen. Virol. 69:1988;253-263.
9. Filman D.J., Syed R., Chow M., Macadam A.J., Minor P.D., Hogle J.M. Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus. EMBO J. 8:1989;1567-1579.
10. Fodor S.P.A., Spiro T.G. Ultraviolet resonance Raman spectroscopy of DNA with 200-266 nm laser excitation. J. Am. Chem. Soc. 108:1986;3198-3205.
11. Fodor S.P.A., Rava R.P., Hays T.R., Spiro T.G. Ultraviolet resonance Raman spectroscopy of the nucleotides with 246, 240, 218, and 200 nm pulsed laser excitation. J. Am. Chem. Soc. 107:1985;1520-1529.
12. -1 in the Raman spectra of tryptophan and related compounds. Spectrochim. Acta Part A. 42:1986;307-312.
13. Harrison S.C., Olson A.J., Schutt C.E., Winkler F.K., Bricogne G. Tomato bushy stunt virus at 2.9 Å resolution. Nature (Lond.). 276:1978;368-373.
14. Helentjaris T., Ehrenfeld E. Inhibition of host cell protein synthesis by UV-inactivated poliovirus. J. Virol. 21:1977;259-267.
15. Hoey E.M., Martin S.J. A possible precursor containing RNA of a bovine enterovirus: the provirion 11. J. Gen. Virol. 24:1974;515-524.
16. Hogle J.M., Chow M., Filman D.J. Three-dimensional structure of poliovirus at 2.9 Å resolution. Science. 229:1985;1358-1365.
17. Hughes J.H., Mitchell M., Hamparian V.V. Rhinoviruses: kinetics of ultraviolet inactivation and effects of UV and heat on immunogenicity. Arch. Viol. 61:1979;313-319.
18. Kaminaka S., Kitagawa T. A novel ides for practical UV resonance Raman measurement with a double monochromator and its application to protein studies. Appl. Spectrosc. 46:1992;1804-1808.
19. Kaminaka S., Kitagawa T. A novel spinning cell system for UV resonance Raman measurement of Trp powder and small volume of mutant carbonmonoxy hemoglobin in back scattering geometry. Appl. Spectrosc. 49:1995;685-687.
20. Kitagawa T. Investigation of higher order structures of proteins by ultraviolet resonance Raman spectroscopy. Prog. Biophys. Mol. Biol. 58:1992;1-18.
21. Koch F., Koch G. Conformational forms of the poliovirus capsid. The Molecular Biology of Poliovirus. 1985;94-113 Springer, New York.
22. Li T., Bamford D.H., Bamford J.K.H., Thomas G.J. Jr. Structural studies of the enveloped dsRNA bacteriophage φ of pseudomonas syringae by Raman spectroscopy. I. The virion and its membrane envelope. J. Mol. Biol. 230:1993;461-472.
23. Li T., Chen Z., Johnson J.E., Thomas G.J. Jr. Conformations, interactions, and thermostabilities of RNA and proteins in bean pod mottle virus: investigation of solution and crystal structures by laser Raman spectroscopy. Biochemistry. 31:1992;6673-6682.
24. Li T., Chen Z., Johnson J.E., Thomas G.J. Jr. Structural studies of bean pod mottle virus, capsid, and RNA in crystal and solution states by laser Raman spectroscopy. Biochemistry. 29:1990;5018-5026.
25. Miura T., Takeuchi H., Harada I. Characterization of individual tryptophan side chains in proteins using Raman spectroscopy and hydrogen-deuterium exchange kinetics. Biochemistry. 27:1988;88-94.
26. Miura T., Takeuchi H., Harada I. Tryptphan Raman bands sensitive to hydrogen bonding and side-chain conformation. J. Raman Spectrosc. 20:1989;667-671.
27. Miura T., Takeuchi H., Harada I. Molecular cloning of a novel ras-like protein from chicken. FEBS Lett. 307:1992;181-184.
28. +-G)10, a single-stranded helix without stacked or paired bases. Biochemistry. 34:1995;14300-14303.
29. 2 subunit interface upon the R-T transition. J. Mol. Struct. 379:1996;65-75.
30. Nishimura Y., Tsuboi M. Conformation-sensitive Raman lines of mononucleotides and their use in a structure analysis of polynucleotides: guanine and cytosine nucleotides. J. Mol. Struct. 146:1986;123-153.
31. Prasad B.V.V., Prevelige P.E., Marietta E., Chen R.O., Thomas D., King J., Chiu W. Three-dimensional transformation of capsids associated with genome packaging in a bacterial virus. J. Mol. Biol. 231:1993;65-74.
32. Prevelige P.E. Jr., Thomas D., Aubrey K.L., Towse S.A., Thomas G.J. Jr. Subunit conformational changes accompanying bacteriophage P22 capsid maturation. Biochemistry. 32:1993;537-543.
33. Rodgers K.R., Su C., Subramaniam S., Spiro T.G. Hemoglobin R→T structural dynamics from simultaneous monitoring of tyrosine and tryptophan time-resolved UV resonance Raman signals. J. Am. Chem. Soc. 114:1992;3697-3709.
34. Rossmann M.G., Arnold E., Erickson J.W., Frankenberger E.A., Griffith J.P., Hecht H.-J., Johnson J.E., Kamer G., Luo M., Mosser A.G., Rueckert R.R., Sherry B., Vriend G. Structure of a human common cold virus and functional relationship to other picornaviruses. Nature (Lond.). 317:1985;145-153.
35. Todd D., Martin S.J. Studies of the replication of a bovine enterovirus RNA. J. Gen. Virol. 43:1979;75-89.
36. Toyama A., Takino Y., Takeuchi H., Harada I. Ultraviolet resonance Raman spectra of ribosyl C(1′)-deuterated purine nucleotides: evidence of vibrational coupling between purine and ribose rings. J. Am. Chem. Soc. 115:1993;11092-11098.
37. Tuma R., Prevelige P.E., Thomas G.J. Structural transitions in the scaffolding and coat proteins of P22 virus during assembly and disassembly. Biochemistry. 35:1996;4619-4627.
38. Tuma R., Thomas G.J. Mechanisms of virus assembly probed by Raman spectroscopy: the icosahedral bacteriophage P22. Biophys. Chem. 68:1997;17-31.
39. Urakawa T., Shingu M. Studies on the classification of bovine enteroviruses. Microbiol. Immunol. 31:1987;771-778.
40. Wen Z.Q., Thomas G.J. UV resonance Raman spectroscopy of DNA and protein constituents of viruses: assignments and cross sections for excitations at 257, 244, 238, and 229 nm. Biopolymers. 45:1998;247-256.
41. Wen Z.Q., Overman S.A., Thomas G.J. Structure and interactions of the single-stranded DNA genome of filamentous virus fd: investigation by ultraviolet resonance Raman spectroscopy. Biochemistry. 36:1997;7810-7820.