Truncated fragments in polymerase chain reaction-based DNA sequencing

Electrophoresis

Volumn 20, Issue 3, 1999, Pages 502-510

  Westberg, Joakim ^a   Holmberg, Anders ^a   Uhlén, Mathias ^a   Pettersson, Bertil ^a  

^a ROYAL INSTITUTE OF TECHNOLOGY   (Sweden)

Author keywords

DNA sequencing; Dye labeled terminators; Polymerase chain reaction; Polymorphism; Run off; Truncated fragments

Indexed keywords

CHAINS; DNA; DNA SEQUENCES; ELECTROPHORESIS; GENE ENCODING; MAGNETIC SEPARATION; POLYMORPHISM;

DNA POLYMERASE; DNA SEQUENCING; DYE-LABELED TERMINATOR; ELECTROPHORESIS GELS; FORMAMIDES; MOLE PERCENTAGES; PCR PRODUCTS; RUN-OFF; SEQUENCING PRIMERS; TRUNCATED FRAGMENT;

POLYMERASE CHAIN REACTION;

AFFINITY LABELING; ARTICLE; DNA SEQUENCE; DNA TEMPLATE; ELECTROPHORESIS; POLYMERASE CHAIN REACTION; SOLID PHASE EXTRACTION;

EID: 0032963217     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1522-2683(19990301)20:3<502::AID-ELPS502>3.0.CO;2-6     Document Type: Article

References (38)

1. Hultman, T., Ståhl, S., Hornes, E., Uhlén, M., Nucleic Acids Res. 1989, 17, 4937-4946.
2. Hedrum, A., Ponten, F., Ren, Z., Lundeberg, J., Ponten, J., Uhlén, M., BioTechniques 1994, 17, 118-129.
3. Leitner, T., Halapi, E., Scarlatti, G., Rossi, P., Albert, J., Fenyö, E.-M., Uhlén, M., BioTechniques 1993, 15, 120-127.
4. Pettersson, B., Johansson, K.-E., Uhlén, M., Appl. Environ. Microbiol. 1994, 60, 2456-2461.
5. Pettersson, B., Leitner, T., Ronaghi, M., Bölske, G., Uhlén, M., Johansson, K.-E., J. Bacteriol. 1996, 178, 4131-4142.
6. Pettersson, B., Uhlén, M., Johansson, K.-E., Int. J. Syst. Bacteriol. 1996, 46, 1093-1098.
7. Pettersson, B., Bölske, G., Thiaucourt, F., Uhlén, M., Johansson, K.-E., J. Bacteriol. 1998, 180, 2350-2358.
8. Wahlberg, J., Albert, J., Lundeberg, J., Cox, S., Wahren, B., Uhlén, M., FASEB J. 1992, 6, 2843-2847.
9. Li, H., Cui, X., Amheim, N., Proc. Natl. Acad. Sci. USA 1990, 87, 4580-4584.
10. Ranu, R. S., Anal. Biochem. 1994, 217, 158-161.
11. Nuovo, G. J., Gallery, F., Horn, R., MacConnell, P., Bloch, W., PCR Methods Appl. 1993, 2, 305-312.
12. Bassam, B. J., Caetano-Anolles, G., BioTechniques 1993, 14, 30-34.
13. An, S. F., Fleming, K. A., J. Clin. Pathol. 1991, 44, 924-927.
14. Obata, F., Tsunoda, M. Ito, K., Ito, I., Kaneko, T., Pawelec, G., Kashiwagi, N., Hum. Immunol. 1993, 36, 163-167.
15. Mullis, K. B., Faloona, F. A., Methods Enzymol. 1987, 155, 335-350.
16. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., FitzHugh, W., Fields, C., Gocayne, J. D., Scott, J., Shirley, R., Liu, L.-I., Glodek, A., Kelley, J. M., Weidman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Goeghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O., Venter, J. C., Science 1995, 269, 496-512.
17. Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., Fritchman, J. L., Weidman, J. F., Small, K. V., Sandusky, M., Fuhrmann, J., Nguyen, D., Utterback, T. R., Saudek, D. M., Phillips, C. A., Merrick, J. M., Tomb, J.-F., Dougherty, B. A., Bott, K. F., Hu, P.-C., Lucier, T. S., Peterson, S. N., Smith, H. O., Hutchison III, C. A., Venter, J. C., Science 1995, 270, 397-403.
18. Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J.-F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A., Scott, J. L., Geoghagen, N. S. M., Venter, J. C., Science 1996, 273, 1058-1073.
19. Blattner, F. R., Plunkett III, G., Bloch, C. A. Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., Shao, Y., Science 1997, 277, 1453-1474.
20. Prober, J. M., Trainor, G. L., Dam, R. J., Hobbs, F. W., Robertson, C. W., Zagursky, R. J., Cocuzza, A. J., Jensen, M. A., Baumeister, K., Science 1987, 238, 336-341.
21. Hultman, T., Ståhl, S., Moks, T., Uhlén, M., Nucleos. Nucleot. 1988, 7, 629-638.
22. Hultman, T., Bergh, S., Moks, T., Uhlén, M., BioTechniques 1991, 10, 84-93.
23. Westberg, J., Nordin Fredrikson, G., Truedsson, L., Sjöholm, A. G., Uhlén, M., Genomics 1995, 29, 1-8.
24. Ansorge, W., Sproat, B. S., Stegemann, J., Schwager, C., J. Biochem. Biophys. Methods 1986, 13, 315-323.
25. Smith, L. M., Sanders, J. Z., Kaiser, R. J., Hughes, P., Dodd, C., Connell, C. R., Heiner, C., Kent, S. B., Hood, L. E., Nature 1986, 321, 674-679.
26. Voss, H., Schwager, C., Wirkner, U., Zimmermann, J., Erfle, H., Hewitt, N. A., Rupp, T., Stegermann, J., Ansorge, W., Methods Mol. Cell. Biol. 1992, 3, 30-34.
27. Voss, H., Wiemann, S., Wirkner, U., Schwager, C., Zimmermann, J., Stegemann, J., Erfle, H., Hewitt, N. A., Rupp, T., Ansorge, W., Methods Mol. Cell. Biol. 1992, 3, 153-155.
28. Zimmermann, J., Voss, H., Erfle, H., Rupp, T., Dietrich, T., Hewitt, N. A., Schwager, C., Stegemann, J., Ansorge, W., Methods Mol. Cell. Biol. 1992, 3, 146-148.
29. Reckmann, B., Grosse, F., Urbanke, C., Frank, R., Blöcker, H., Krauss, G., Eur. J. Biochem. 1985, 152, 633-643.
30. Murray, V., Nucleic Acids Res. 1989, 17, 88-89.
31. Mullis, K. B., PCR Methods Appl. 1991, 1, 1-4.
32. Khurshid, F., Beck, S., Anal. Biochem. 1993, 208, 138-143.
33. Berg, C., Hedrum, A., Holmberg, A., Pontén, F., Uhlén, M., Lundeberg, J., Clin. Chem. 1995, 41, 1461-1466.
34. Wiemann, S., Stegemann, J., Grothues, D., Bosch, A., Estivill, X., Schwager, C., Zimmermann, J., Voss, H., Ansorge, W., Anal. Biochem. 1995, 224, 117-121.
35. Gray, M. W., Sankoff, D., Cedergren, R. J., Nucleic Acids Res. 1984, 12, 5837-5852.
36. Brosius, J., Palmer, M. L., Kennedy, P. J., Noller, H. F., Proc. Natl. Acad. Sci. USA 1978, 75, 4801-4805.
37. Tong, X., Smith, L. M., Anal. Chem. 1992, 64, 2672-2677.
38. Lagerkvist, A., Stewart, J., Lagerström-Fermér, M., Landegren, U., Proc. Natl. Acad. Sci. USA 1994, 91, 2245-2249.