Genetic analysis of large-sized RNA 2 species of a TCM-like tobacco rattle virus source from spinach

Archives of Virology

Volumn 144, Issue 3, 1999, Pages 503-511

  Schmidt, K ^a   Koenig, R ^a  

^a Inst für Biochem Pflanzenvir   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; COAT PROTEIN; GENETIC ANALYSIS; ONION; SPINACH; TOBACCO RATTLE VIRUS; TULIP; VIRUS ISOLATION;

5' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; BASE SEQUENCE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANT LEAVES; PLANT VIRUSES; RNA VIRUSES; RNA, VIRAL; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPINACIA OLERACEA;

ALLIUM CEPA; NICOTIANA TABACUM; SPINACIA OLERACEA; TOBACCO RATTLE VIRUS; TOBRAVIRUS; TULIPA;

EID: 0032954930     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050521     Document Type: Article

References (22)

1. 1. Angenent GC, Linthorst HJM, van Belkum AF, Cornelissen BJC, Bol JF (1986) RNA 2 of tobacco rattle virus strain TCM encodes an unexpected gene. Nucleic Acids Res 14: 4 673-4 682
2. 2. Angenent GC, Posthumus E, Brederode FT, Bol JF (1989) Genome structure of tobacco rattle virus strain PLB: further evidence on the occurrence of RNA recombination among tobraviruses. Virology 171: 271-274
3. 3. Bergh ST, Koziel MG, Shu-Ching Huang, Thomas RA, Gilley DP, Siegel A (1985) The nucleotide sequence of tobacco rattle virus RNA-2 (CAM strain). Nucleic Acids Res 13: 8 507-8 518
4. 4. Cornelissen BJC, Linthorst HJM, Brederode FT, Bol JF (1986) Analysis of the genome structure of tobacco rattle virus strain PSG. Nucleic Acids Res 14: 2 157-2 169
5. 5. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analyses for the VAX. Nucleic Acids Res 12: 387-395
6. 6. Goulden MG, Lomonossoff GP, Davies JW, Wood KR (1990) The complete nucleotide sequence of PEBV RNA2 reveals the presence of a novel open reading frame and provides insights into the structure of tobraviral subgenomic promoters. Nucleic Acids Res 18: 4 507-4 512
7. 7. Goulden MG, Lomonossoff GP, Wood KR, Davies JW (1991) A model for the generation of tobacco rattle virus (TRV) anomalous isolates: pea early browning virus RNA-2 acquires TRV sequences from both RNA-1 and RNA-2. J Gen Virol 72: 1 751-1 754
8. 8. Harrison BD, Robinson DJ (1986) Chapter 17. Tobraviruses. In: van Regenmortel MHV, Fraenkel-Conrat H (eds). The plant viruses vol 2. Plenum Press, New York London, pp 339-369
9. 9. Hamilton WDO, Boccara M, Robinson DJ, Baulcombe DC (1987) The complete nucleotide sequence of tobacco rattle virus RNA-1. J Gen Virol 68: 2 563-2 575
10. 10. Hernández C, Carette JE, Brown DJF, Bol JF (1996) Serial passage of tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA 2. J Virol 70: 4 933-4 940
11. 11. Hernández C, Mathis A, Brown DJF, Bol JF (1995) Sequence of RNA 2 of a nematode-transmissible isolate of tobacco rattle virus. J Gen Virol 76: 2 847-2 851
12. 12. Hernández C, Visser PB, Brown DJF, Bol JF (1997) Transmission of tobacco rattle virus isolate PpK20 by its nematode vector requires one of the two non-structural genes in the viral RNA 2. J Gen Virol 78: 465-467
13. 13. Koenig R (1997) Magnetic bead technology aids sequence determinations for the 3′ - and 5′-ends of viral RNAs. BioTechniques 23: 102-104
14. 14. Koenig R, Pleij CWA, Beier C, Commandeur U (1998) Genome properties of beet virus Q, a new furo-like virus from sugarbeet, determined from unpurified virus. J Gen Virol 79: 2 027-2 036
15. 15. Legorburu FJ, Robinson DJ, Torrance L (1996) Features on the surface of the tobacco rattle tobravirus particle that are antigenic and sensitive to proteolytic digestion. J Gen Virol 77: 855-859
16. 16. MacFarlane SA (1996) Rapid cloning of uncharacterised tobacco rattle virus isolates using long template (LT) PCR. J Virol Methods 56: 91-98
17. 17. MacFarlane SA, Brown DJF (1995) Sequence comparison of RNA 2 of nematode-transmissible and nematode-non-transmissible isolates of pea early-browning virus suggests that the gene encoding the 29kDa protein may be involved in nematode transmission. J Gen Virol 76: 1 299-1 304
18. 18. MacFarlane SA, Wallis CV, Brown DJF (1996) Multiple virus genes in the nematode transmission of pea early browning virus. Virology 219: 417-422
19. 19. Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (1995) Virus Taxonomy. Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York, pp 445-449 (Arch Virol [Suppl] 10)
20. 20. Schmitt C, Mueller AM, Mooney A, Brown D, MacFarlane S (1998) Immunological detection and mutational analysis of the RNA2-encoded nematode transmission proteins of pea early browning virus. J Gen Virol 79: 1 281-1 288
21. 21. Uhde K, Koenig R, Lesemann D-E (1998) An onion isolate of tobacco rattle virus: reactivity with an antiserum to Hypochoeris mosaic virus, a putative furovirus, and molecular analysis of its RNA 2. Arch Virol 143: 1 041-1 053
22. 22. van Regenmortel MHV, Bishop DHL, Fauquet CM, Mayo MA, Maniloff J, Calisher CH (1997) Guidelines to the demarcation of virus species. Arch Virol 142: 1 505-1 518