Serial passage of tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA 2

Journal of Virology

Volumn 70, Issue 8, 1996, Pages 4933-4940

  Hernandez, Carmen ^a   Carette, Jan E ^a   Brown, Derek J F ^b   Bol, John F ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; VIRUS RNA;

ARTICLE; GENE DELETION; GENE ISOLATION; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; RNA VIRUS; VIRUS GENE; VIRUS TRANSMISSION;

EID: 0029986176     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.8.4933-4940.1996     Document Type: Article

References (40)

1. Angenent, G. C., H. J. M. Linthorst, A. F. van Belkum, B. J. C. Cornelissen, and J. F. Bol. 1986. RNA 2 of tobacco rattle virus strain TCM encodes an unexpected gene. Nucleic Acids Res. 14:4673-4682.
2. Angenent, G. C., E. Posthumus, F. T. Brederode, and J. F. Bol. 1989. Genome structure of tobacco rattle virus strain PLB: further evidence on the occurrence of RNA recombination among tobraviruses. Virology 171:271-274.
3. Bouzoubaa, S., U. Niesbach-Klösgen, I. Jupin, H. Guilley, K. Richards, and G. Jonard. 1991. Shortened forms of beet necrotic yellow vein virus RNA-3 and -4: internal deletions and a subgenomic RNA. J. Gen. Virol. 72:259-266.
4. Burgyan, J., F. Grieco, and M. Russo. 1989. A defective interfering RNA molecule in cymbidium ringspot virus infections. J. Gen. Virol. 70:235-239.
5. Carpenter, C. D., J.-W. Oh, C. Zhang, and A. E. Simon. 1995. Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination. J. Mol. Biol. 245:608-621
6. Chen, J., S. A. MacFarlane, and T. M. A. Wilson. 1994. Detection and sequence analysis of a spontaneous deletion mutant of soil-borne wheat mosaic virus RNA 2 associated with increased symptom severity. Virology 202:921-929.
7. Cornelissen, B. J. C., H. J. M. Linthorst, F. T. Brederode, and J. F. Bol. 1986. Analysis of the genome structure of tobacco rattle virus strain PSG. Nucleic Acids Res. 14:2157-2169.
8. Feinberg, A. P., and B. Vogelstein. 1984. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:6-13.
9. Goulden, M. G., G. P. Lomonossoff, K. R. Wood, and J. W. Davies. 1991. A model for the generation of tobacco rattle virus (TRV) anomalous isolates: pea early browning virus RNA-2 acquires TRV sequences from both RNA-1 and RNA-2. J. Gen. Virol. 72:1751-1754.
10. Graves, M. V., and M. J. Roosinck. 1995. Characterization of defective RNAs derived from RNA 3 of the Fny strain of cucumber mosaic cucumovirus. J. Virol. 69:4746-4751.
11. Hamilton, W. D. O., M. Boccara, D. J. Robinson, and D. C. Baulcombe. 1987. The complete nuclcotide sequence of tobacco rattle virus RNA-1. J. Gen. Virol. 58:2563-2575.
12. Harrison, B. D., and D. J. Robinson. 1986. Tobraviruses, p. 339-369. In H. V. Van Regenmortel and H. Fraenkel-Conrat (ed.), The plant viruses, vol. 2. Plenum, New York.
13. Harrison, B. D., and R. D. Woods. 1966. Serotypes and particle dimensions of tobacco rattle viruses from Europe and America. Virology 28:610-620.
14. Hernández, C., A. Mathis, D. J. F. Brown, and J. F. Bol. 1995. Sequence of RNA 2 of a nematode transmissible isolate of tobacco rattle virus. J. Gen. Virol. 76:2847-2851.
15. Hillman, B. I., J. C. Carrington, and T. J. Morris. 1987. A detective interfering RNA that contains a mosaic of a plant virus genome. Cell 51:427-433.
16. Holland, J. J. 1991. Defective viral genomes, p. 151-165. In B. N. Fields and D. M. Knipe (ed.), Virology. Raven Press, New York.
17. Ismail, I. D., and J. J. Milner. 1988. Isolation of detective interfering particles of sonchus yellow net virus from chronically infected plants. J. Gen. Virol. 69:999-1006.
18. Jackson, A. O., B. G. Hunter, and G. D. Gustafson. 1989. Hordeivirus relationships and genome organization. Annu. Rev. Phytopathol. 27:95-121.
19. Knorr, D. A., R. H. Mullin, P. Q. Hearne, and T. J. Morris. 1991. De novo generation of defective interfering RNAs of tomato bushy stunt virus by high multiplicity passage. Virology 181:193-202.
20. Lai, M. M. C. 1992. RNA recombination in animal and plant viruses. Microbiol. Rev. 56:61-79.
21. Law, M. D., and T. J. Morris. 1994. De novo generation and accumulation of tomato bushy stunt virus defective interfering RNAs without serial host passage. Virology 198:377-380.
22. Li, X. H., L. A. Heaton, T. J. Morris, and A. E. Simon. 1989. Turnip crinkle virus defective interfering RNAs intensify viral symptoms and are generated de novo. Proc. Natl. Acad. Sci. USA 86:9173-9177.
23. Li, X. H., and A. E. Simon. 1991. In vivo accumulation of a turnip crinkle virus defective interfering RNA is affected by alterations in size and sequence. J. Virol. 65:4582-4590.
24. Lister, R. M., and C. E. Bracker. 1969. Defectiveness and dependence in three related strains of TRV. Virology 37:262-275.
25. MacFarlane, S. A., D. J. F. Brown, and J. F. Bol. 1995. The transmission by nematodes of tobraviruses is not determined exclusively by the virus coat protein. Eur. J. Plant Pathol. 101:535-539.
26. Malhis, A., and H. J. M. Linthorst. 1992. The tobraviruses, p. 1442-1446. In R. G. Webster and A. Granoft (ed.), Encyclopedia of virology. Academic Press, Ltd., London.
27. Mawassi, M., A. V. Karasev, E. Mietkiewska, R. Gafny, R. F. Lee, W. O. Dawson, and M. Bar-Joseph. 1995. Defective RNA molecules associated with citrus tristeza virus. Virology 208:383-387.
28. Pilipenko, E. V., A. P. Gmyl, and V. I. Agol. 1995. A model for rearrangements in RNA genomes. Nucleic Acids Res. 23:1870-1875.
29. Ploeg, A. T., D. J. F. Brown, and D. J. Robinson. 1989 Transmission of tobraviruses by trichodorid nematodes. EPPO Bull. 19:605-610.
30. Ploeg, A. T., D. J. F. Brown, and D. J. Robinson. 1992. The association between species of Trichodorus and Paratrichodorus vector nematodes and serotypes of tobacco rattle virus. Ann. Appl. Biol. 121:619-630.
31. Ploeg, A. T., D. J. Robinson, and D. J. F. Brown. 1993. RNA 2 of tobacco rattle virus encodes the determinants of transmissibility by trichodorid nematodes. J. Gen. Virol. 74:1463-1466.
32. Pogany, J., J. Romero, Q. Huang, J.-Y. Sgro, H. Shang, and J. J. Bujarski. 1995. De novo generation of defective interfering-like RNAs in broad bean mottle bromovirus. Virology 212:574-586.
33. Robinson, D. J., W. D. O. Hamilton, B. D. Harrison, and D. C. Baulcome. 1987. Two anomalous tobravirus isolates: evidence for RNA recombination in nature. J. Gen. Virol. 68:2551-2561.
34. Romero, J., Q. Huang, J. Pogany, and J. J. Bujarski. 1993. Characterization of defective interfering RNA components that increase symptom severity of broad bean mottle virus infections. Virology 194:576-584.
35. Towbin, H. T., T. Staehelin, and J. Gordon. 1979. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA 76:4350-4354.
36. Verwoerd, T. C., B. M. M. Dekker, and A. Hoekema. 1989. A small-scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Res. 17:2362.
37. Westneat, D. F., W. A. Noon, H. K. Reeve, and C. F. Aquadro. 1988. Improved hybridization conditions for DNA "fingerprints" probed with M13. Nucleic Acids Res. 16:4161.
38. White, K. A., J. B. Bancroft, and G. A. Mackie. 1991. Defective RNAs of clover yellow mosaic virus encode nonstructural/coat protein fusion products. Virology 183:479-486.
39. White, K. A., J. B. Bancroft, and G. A. Mackie. 1992. Coding capacity determines in vivo accumulation of a defective RNA of clover yellow mosaic virus. J. Virol. 66:3069-3076.
40. White, K. A., and T. J. Morris. 1994. Nonhomologous RNA recombination in tombusviruses: generation and evolution of defective interfering RNAs by stepwise deletions. J. Virol. 68:14-24.