Utilization of gene mapping information in livestock animals

Theriogenology

Volumn 51, Issue 1, 1999, Pages 135-147

  Kappes, S M ^a  

^a U S MEAT ANIMAL RESEARCH CENTER   (United States)

Author keywords

Cattle; Gene mapping; Nuclear transfer; Pigs; Sheep

Indexed keywords

AGRICULTURE; ANIMAL; ANIMAL DISEASE; CATTLE; CHROMOSOME BANDING PATTERN; CHROMOSOME MAP; CONFERENCE PAPER; DNA POLYMORPHISM; DOMESTIC ANIMAL; FEMALE; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENE TRANSFER; GENETIC LINKAGE; GENETIC SELECTION; GENETICS; GENOME; MALE; NONHUMAN; QUANTITATIVE TRAIT; SHEEP; SWINE;

ANIMALS; ANIMALS, DOMESTIC; CATTLE; CHROMOSOME BANDING; CHROMOSOME MAPPING; FEMALE; GENOME; MALE; SHEEP; SWINE;

ANIMALIA; BOS TAURUS; OVIS ARIES; SUS SCROFA;

EID: 0032954497     PISSN: 0093691X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0093-691X(98)00237-4     Document Type: Conference Paper

References (61)

1. Andersson L, Haley CS, Ellegren H, Knott SA, Johansson M, Andersson K, Andersson-Eklund L, Edfors-Lilja I, Fredholm M, Hansson I, Håkansson J, Lundstrom. Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 1994;263:1771-1774.
2. Antoch MP, Song E-J, Chang A-M, Vitaterna MH, Zhao Y., Wilsbacher LD, Sangoram AM, King DP, Pinto LH, Takahashi JS. Functional identification of the mouse circadian clock gene by transgenic BAC rescue. Cell 1997;89:655-667.
3. Archibald AL, Couperwhite S, Haley CS, Beattie, C W, Alexander LJ. RFLP and linkage analysis of the porcine casein loci - CASAS1, CASAS2, CASB and CASK. Anim Genet 1994;25:349-351.
4. Ashwell MS, Rexroad CE Jr, Miller RH, VanRaden PM. Mapping economic traits loci for somatic cell score in Holstein cattle using microsatellite markers and selective genotyping. Anim Genet 1996;27:235-242.
5. Barendse W, Armitage SM, Kossarek LM, Shalom A, Kirkpatrick BW, Ryan AM, Clayton D, LI L, Neibergs HL, Zhang N, Grosse WM, Weiss J, Creighton P, McCarthy F, Ron M, Teale AJ, Fries R, McGraw RA, Moore SS, Georges M, Soller M, Womack JE, Hetzel DJS. A genetic linkage map of the bovine genome. Nat Genet 1994;6:227-235.
6. Barendse W, Vaiman D, Kemp SJ, Sugimoto Y, Armitage SM, Williams JL, Sun HS, Eggen A, Agaba M, Aleyasin SA, Band M, Bishop MD, Buitkamp J, Byrne K, Collins F, Cooper L, Coppetiers W, Denys B, Drinkwater RD, Easterday K, Elduque C, Ennis S, Erhardt G, Ferretti L, Flavin N, Gao Q, Georges M, Gurung R, Harzilius B, Hawkins G, Hetzel J, Hirano T, Hulme D, Jorgensen C, Kessler M, Kirpatrick BW, Konfortov B, Kostia S, Kuhn C, Lenstra JA, Leveziel H, Lewin HA, Leyhe B, LIl L, Martin Burriel I, McGraw RA, Miller JR, Moody DE, Moore SS, Nakane S, Nijman IJ, Olsaker I, Pomp D, Rando A, Ron M, Shalom A, Teale AJ, Thieven U, Urquhart BGD, Vage DI, Van de Weghe A, Varvio S, Velmala R, Vilkki J, Weikard R, Woodside C, Womack JE, Zanotti M, Zaragoza P. A medium-density genetic linkage map of the bovine genome. Mamm Genome 1997;8:21-28.
7. Beever JE, Shay TL, Albretson J, Maciulis A, Bunch TD, Holyoak GR, Cockett NE. Identification of the causative mutation in ovine hereditary chondrodysplasia. Proc PAGVI, San Diego CA 1998;32 abstr.
8. Bernacchi D, Tanksley SD. An interspecific backcross of Lycopersicon esculentum x L. Hirsutum: Linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 1997;147:861-877.
9. Bishop, MD, Kappes SM, Keele JW, Stone RT, Hawkins GA, Solinas-Toldo S, Fries R, Grosz MD, Yoo J, Beattie CW. A genetic linkage map for cattle. Genetics 1994;136:619-639.
10. Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 1980;32:314-331.
11. Casas E, Keele JW, Shackelford SD, Koohmaraie M, Sonstegard TS, Smith TPL, Kappes SM, Stone RT. Association of the muscle hypertrophy locus with carcass traits in beef cattle. J Anim Sci 1998;76:468-473.
12. Charlier C, Coppieters W, Farnir F, Grobet L, Leroy PL, Michaux C, Mni M, Schwers A, Vanmanshoven P, Hanset R, Georges M. The mh gene causing double-muscling in cattle maps to bovine chromosome 2. Mamm Genome 1995;6:788-792.
13. Charlier C, Denys B, Belanche JI, Coppieters W, Grobet L, Mni M, Womack J, Hanset R, Georges M. Microsatellite mapping of the bovine roan locus: A major determinant of White Heifer Disease. Mamm Genome 1996;7:138-142.
14. Charlier C, Farnir F, Berzi P, Vanmanshoven P, Brouwers B, Vromans H, Georges M. Identity-by-descent mapping of recessive traits in livestock: Application to map the bovine Syndactyly locus to chromosome 15. Genome Res 1996;6:580-589.
15. Chowdhary BP, Frönicke L, Gustavsson I, Scherthan H. Comparative analysis of the cattle and human genomes: Detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mamm Genome 1996;7:297-302.
16. Cibelli JB, Stice SL, Golueke PJ, Kane JJ, Jerry J, Blackwell C, Ponce de Leon FA, Robl JM. Cloned transgenic calves produced from nonquiescent fetal fibroblasts. Science 1998;280:1256-1258.
17. Cockett NE, Jackson SP, Shay TL, Nielsen D, Moore SS, Steele MR, Barendse W, Green RD, Georges M. Chromosomal localization of the callipyge gene in sheep (Ovis aries) using bovine DNA markers. Proc Natl Acad Sci 1994;91:3019-3023.
18. Collins FS, Guyer MS, Chakravarti A. Variations on a theme: Cataloging human DNA sequence variation. Science 1997;278:1580-1581.
19. Crawford AM, Dodds KG, Ede AJ Pierson CA, Montgomery GW, Garmonsway HG, Beattie AE, Davies K, Maddox JF, Kappes SM, Stone RT, Nguyen TC, Penty JM, Lord EA, Broom JE, Buitkamp J, Schwaiger W, Epplen JT, Matthew P, Matthews ME, Hulme DJ, Beh KJ, McGraw RA, Beattie CW. An autosomal genetic linkage map of the sheep genome. Genetics 1995;140:703-724.
20. Crouse JD, Cundiff LV, Koch RM, Koohmaraie M, Seideman SC. Comparisons of Bos indicus and Bos taurus inheritance for carcass beef characteristics and meat palatability. J Anim Sci 1989;67:2661-2668.
21. Davis GH, McEwan JC, Fennessy PF, Dodds KG, Farquhar PA. Evidence of the presence of a major gene influencing ovulation rate on the X chromosome of sheep. Biol Reprod 1991;44:620-624.
22. de Gortari MJ, Freking BA, Kappes SM, Leymaster KA, Crawford AM, Stone RT, Beattie CW. Extensive genomic conservation of cattle microsatellite heterozygosity in sheep. Anim Genet 1997;28:274-290.
23. de Gortari MJ, Freking BA, Cuthbertson RP, Kappes SM, Keele JW, Stone RT, Leymaster KA, Dodds KG, Crawford AM, Beattie CW. A second-generation linkage map of the sheep genome. Mamm Genome 1998;9:204-209.
24. Ellegren H, Chowdhary BP, Johansson M, Marklund L, Fredholm M, Gustavsson I, Andersson L. A primary linkage map of the porcine genome reveals a low rate of genetic recombination. Genetics 1994;137:1089-1100.
25. Fronicke L, Chowdhary BP, Scherthan H, Gustavsson I. A comparative map of the porcine and human genomes demonstrates ZOO-FISH and gene mapping-based chromosomal homologies. Mamm Genome 1996;7:285-290.
26. Fujii J, Otsu K, Zorzato F, De Leon S, Khanna VK, Weiler JE, O'Brien PJ, MacLennan DH. Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia. Science 1991;253:448-451.
27. Georges M, Dietz AB, Mishra A, Nielsen D, Sargeant LS, Sorensen A, Steele MR, Zhao X, Leipold H, Womack JE, Lathrop M. Microsatellite mapping of the gene causing Weaver disease in cattle will allow the study of an associated quantitative trait locus. Proc Natl Acad Sci 1993;90:1058-1062.
28. Georges M, Drinkwater R, King T, Mishra A, Moore SS, Nielsen D, Sargeant LS, Sorensen A, Steele MR, Zhao X, Womack JE, Hetzel J. Microsatellite mapping of a gene affecting horn development in Bos taurus. Nat Genet 1993;4:206-210.
29. Georges M, Nielsen D, Mackinnon M, Mishra A, Okimoto R, Pasquino AT, Sargeant LS, Sorensen A, Steele MR, Zhao X, Womack JE, Hoeschele I. Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 1995;139:907-920.
30. Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, Pinton P, Frelat G, Gellin J. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 1996;36:252-262.
31. Green RD, Cundiff LV, Dickerson GE. Life-cycle biological efficiency of Bos indicus x Bos taurus and Bos taurus crossbred cow-calf production to weaning. J Anim Sci 1991;69:3544-3563.
32. Green RD, Cundiff LV, Dickerson GE, Jenkins TG. Output/input differences among nonpregnant, lactating Bos indicus-Bos taurus and Bos taurus-Bos taurus F1 cross cows. J Anim Sci 1991;69:3156-3166.
33. Gregory KE, Echternkamp SE, Dickerson GE, Cundiff LV, Koch RM, Van Vleck LD. Twinning in cattle: I. Foundation animals and genetic and environmental effects on twinning rate. J Anim Sci 1990;68:1867-1876.
34. Grobet L, Royo Martin LJ, Poncelet D, Pirottin D, BRouwers B, Riquet J, Schoeberlein A., Dunner S., Ménissier F, Massabanda J, Fries R, Hanset R, Georges M. A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nature Genet 1997;17:71-74.
35. Grobet L, Poncelet D, Royo, LJ, BRouowers B, Pirottin D, Michaux C, Menissier F, Zanotti M, Dunner S, Georges M. Molecular definition of an allelic series of mutations disrupting the myostatin function and causing double-muscling in cattle. Mamm Genome 1998;9:210-213.
36. Hayes H. Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 1995;71:168-174.
37. Johansson Moller M, Chaudhary R, Hellmén E, Høyheim B, Chowdhary B, Andersson L. Pigs with the dominant white coat color phenotype carry a duplication of the KIT gene encoding the mast/stem cell growth factor receptor. Mamm Genome 1996;7:822-830.
38. Kambadur R, Sharma M, Smith TPL, Bass JJ. Mutations in myostatin (GDF8) in double-muscled Belgian Blue and Piedmontese cattle. Genome Res 1997;7:910-915.
39. Kappes SM, Keele JW, Stone RT, McGraw RA, Sonstegard TS, Smith TPL, Lopez-Corrales NL, Beattie CW. A second generation linkage map of the bovine genome. Genome Research 1997;7:235-249.
40. Klungland H, Vage DI, Gomex-Raya L, Adalsteinsson S, Lien S. The role of melanocyte-stimulating hormone (MSH) receptor in bovine coat color determination. Mamm Genome 1995;6:636-639.
41. Lander ES, Botstein D. Mapping complex genetic traits in humans: New methods using a complete RFLP linkage map. Cold Spring Harb Symp Quant Biol 1986;51:49-62.
42. Ma RZ, van Eijk MJT, Beever JE, GUérin G, Mummery CL, Lewin HA. Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Mamm Genome 1998;9:545-549.
43. McPherron AC, Lawler AM, Lee S-J. Regulation of skeletal muscle mass in mice by a new TGF-β superfamily member. Nature 1997;387:83-90.
44. Montgomery GW, Lord EA, Penty JM, Dodds KG, Broad TE, Cambridge L, Sunden SLF, Stone RT, Crawford AM. The Booroola fecundity (FecB) gene maps to sheep chromosome 6. Genomics 1994;22:148-153.
45. Olson TA, Euclides Filho K, Cundiff LV, Koger M, Buss WT Jr, Gregory KE. Effects of breed group by location interaction on crossbred cattle in Nebraska and Florida. J Anim Sci 1991;69:104-114.
46. Paterson AH. Molecular dissection of quantitative traits: Progress and prospects. Genome Res 1995;5:321-333.
47. Rohrer GA, Alexander LJ, Keele JW, Smith TPL, Beattie CW. A microsatellite linkage map of the porcine genome. Genetics 1994;136:231-245.
48. Rohrer GA, Alexander LJ, Hu Z, Smith TPL, Keele, JW, Beattie CW. A comprehensive map of the porcine genome. Genome Res 1996;6:371-391.
49. Rucker EB, Piedrahita JA. Cre-mediated recombination at the murine whey acidic protein (mWAP) locus. Mol Reprod Dev 1997;48:324-331.
50. Russell DW, Hirata RK. Human gene targeting by viral vectors. Nat Genet 1998;18:325-330.
51. Schiedner G, Morral N, Parks RJ, Wu Y, Koopmans SC, Langston C, Graham FL, Beaudet AL, Kochanek S. Genomic DNA transfer with a high-capacity adenovirus vector results in improved in vivo gene expression and decreased toxicity. Nat Genet 1998;18:180-183.
52. Smith TPL, Lopez-Corrales NL, Kappes SM, Sonstegard TS. Myostatin maps to the interval containing the bovine mh locus. Mamm Genome 1997;8:742-744.
53. SOlinas-Toldo S, Lengauer C, Fries R. Comparative genome map of human and cattle. Genomics 1995;27:489-496.
54. Sonstegard TS, Kappes SM, Keele JW, Smith TPL. Refinement of bovine chromosome 2 linkage map near the mh locus reveals rearrangements between the bovine and human genomes. Proc PAGVI San Diego, CA 1998;155 abst.
55. Tanksley SD, McCouch SR. Seed banks and molecular maps: Unlocking genetic potential from the wild. Science 1997;277:1063-1066.
56. Tosser-Klopp G., Benne F, Bonnet A, Mulsant P, Gasser F, Hatey F. A first catalog of genes involved in pig ovarian follicular differentiation. Mamm Genome 1997;8:250-254.
57. Venter JC, Adams MD, Sutton GG, Kerlavage AR, Smith HO, Hunkapiller M. Shotgun sequencing of the human genome. Science 1998;280:1540-1542.
58. Wakayama T, Perry ACF, Zuccotti M, Johnson KR, Yanagimachi R. Full-term development of mice from enucleated oocytes injected with cumulus cell nuclei. Nature 1998;394:369.
59. Weber JL, May PE. Abundant class of human DNA polymorphism which can be typed using the polymorpic chain reaction. Am J Human Genet 1989;44:388-396.
60. Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH. Viable offspring derived from fetal and adult mammalian cells. Nature 1997;385:810-813.
61. Yan Y-L, Talbot WS, Egan ES, Postlethwait JH. Mutant rescue by BAC clone injection in Zebrafish. Genomics 1998;50:287-289.