Genetic variation, population structure and cryptic species within the black mudfish, Neochanna diversus, an endemic galaxiid from New Zealand

Molecular Ecology

Volumn 8, Issue 1, 1999, Pages 47-57

  Gleeson, D M ^a   Howitt, R L J ^a   Ling, N ^b  

^a LANDCARE RESEARCH   (New Zealand)

^b UNIVERSITY OF WAIKATO   (New Zealand)

Author keywords

Conservation; Cryptic species; Galaxiidae; Genetic structuring; Population genetics

Indexed keywords

CONSERVATION; FISH GENETICS; GALAXIAS CLEAVERI; GALAXIAS MACULATUS; GENETIC DIVERSITY; GENETIC VARIANCE; GEOGRAPHIC VARIATION; MITOCHONDRIAL DNA; NEOCHANNA APODA; NEOCHANNA BURROWSIUS; NEW ZEALAND; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION GENETICS; POPULATION STRUCTURE; TANDEM REPEAT;

ANIMALS; BASE SEQUENCE; CONSERVATION OF NATURAL RESOURCES; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; HAPLOTYPES; MOLECULAR SEQUENCE DATA; NEW ZEALAND; PHYLOGENY; SALMONIFORMES; SEQUENCE ANALYSIS, DNA; TANDEM REPEAT SEQUENCES; VARIATION (GENETICS);

GALAXIAS CLEAVERI; GALAXIAS MACULATUS; GALAXIIDAE; NEOCHANNA APODA; NEOCHANNA BURROWSIUS; NEOCHANNA DIVERSUS;

EID: 0032948526     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1999.00528.x     Document Type: Article

References (42)

1. Allibone RM, Crowl TA, Holmes JM et al. (1996) Isozyme analysis of Galaxias species (Teleostei: Galaxiidae) from the Taieri River, South Island, New Zealand: a species complex revealed. Biological Journal of the Linnean Society, 57, 107-127.
2. Baillie J, Groombridge B (1996) IUCN Red Data List of Threatened Animals. World Conservation Union, IUCN. Gland, Switzerland
3. Ballance PF, Williams PA (1992) The geomorphology of Auckland and Northland. In: (Soons JM, Selby MJ eds) Landforms of New Zealand, 2nd edn, pp. 210-233. Longman Paul, Auckland, New Zealand.
4. Beckenbach AT, Thomas WK, Sohrabi H (1990) Intraspecific sequence variation in the mitochondrial genome of rainbow trout (Onycorhynchus mykiss). Genome, 33, 13-15.
5. Bermington E, Martin AP (1998) Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America. Molecular Ecology, 7, 499-517.
6. Bernatchez L, Wilson CC (1998) Comparative phylogeography of nearctic and palearctic fishes. Molecular Ecology, 7, 431-452.
7. Bernatchez L, Guyomard R, Bonhomme F (1992) DNA sequence variation of the mitochondrial control region among geographically and morphologically remote European brown trout Salmo trutta populations. Molecular Ecology, 1, 161-173.
8. Broughton RE, Dowling TE (1994) Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera. Genetics, 138, 179-190.
9. Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitchondrial DNA sequences of primates: tempo and mode of evolution. Journal of Molecular Evolution, 18, 225-239.
10. Echelle AA, Dowling TE (1992) Mitochondrial DNA variation of the Death Valley pupfishes (Cyprinodon, Cyprinodontidae). Evolution, 46, 193-206.
11. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17, 783-791.
12. Felsenstein J (1985) Confidence limits on phytogenies: an approach using the bootstrap. Evolution, 39, 783-791.
13. Felsenstein J (1995) PHYLIP Version 3.5. University of Washington, Seattle, WA.
14. Fumigalli L, Taberlet P, Favre L, Hauser J (1996) Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews. Molecular Biology and Evolution, 13, 31-46.
15. Green JD, Lowe DJ (1985) Stratigraphy and development of c17 000 year old Lake Maratoto, North Island, New Zealand, with some inferences about postglacial climatic change. New Zealand Journal of Geology and Geophysics, 28, 657-699.
16. Hicks BJ, Barrier RFC (1996) Habitat requirements of black mudfish (Neochanna diversus) in the Waikato region, North Island, New Zealand. New Zealand Journal of Marine and Freshwater Research, 30, 135-151.
17. Hicks D (1983) Landscape evolution in consolidated coastal dunesands. Zeitschrift Fur Geomorphologie, Supplement, 45, 245-250.
18. Jukes TH, Cantor CR (1969) Evolution of protein molecules In: (Munro HN ed.) Mammalian Protein Metabolism, pp. 21-132. Academic Press, New York, NY.
19. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
20. Kocher TD, Thomas WK, Meyer A et al. (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the USA, 86, 6196-6200.
21. Lynch M, Crease TJ (1990) The analysis of population survey data on DNA sequence variation. Molecular Biology and Evolution, 7, 377-394.
22. McDowall RM (1990) New Zealand Freshwater Fishes: A Natural History and Guide. Heinemann-Reed, Auckland, New Zealand.
23. McDowall RM (1997) Affinities, generic classification and biogeography of the Australian and New Zealand mudfishes (Salmoniformes: Galaxiidae). Records of the Australian Museum, 49, 121-137.
24. Millar CD, Lambert DM, Bellamy AR, Stapleton PM, Young EC (1992) Sex-specific restriction fragments and sex ratios revealed by DNA fingerprinting in the brown skua. Journal of Heredity, 83, 350-355.
25. Moritz C (1994) Applications of mitochondrial DNA analysis on conservation: a critical review. Molecular Ecology, 3, 401-411.
26. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
27. New Zealand Meteorological Service (1983) Summaries of climatological observations to 1980. New Zealand Meteorological Service Miscellaneous Publication, 177, 172, pp.
28. Ovenden JR, White RW (1990) Mitochondrial and allozyme genetics of incipient speciation in a landlocked population of Galaxias truttaceus (Pisces: Galaxiidae). Genetics, 124, 701-716.
29. Pillans B, Pullar WA, Selby MJ, Soons JM (1992) The age and development of the New Zealand landscape. In: (Soons JM, Selby MJ eds) Landforms of New Zealand, 2nd edn, pp. 31-62. Longman Paul, Auckland, New Zealand.
30. Quattro JM, Vrijenhoek RC (1989) Fitness differences among remnant populations of the Sonoran topminnow, Poeciliopsis occidentalis. Science, 245, 976-978.
31. Quattro JM, Avise JC, Vrijenhoek RC (1991) Molecular evidence for multiplying origins of hybridogenetic fish clones (Poeciliidae: Poeciliopsis). Genetics, 127, 391-398.
32. Rand DM (1993) Endotherms, ectotherms, and mitochondrial genome-size variation. Journal of Molecular Evolution, 37, 281-295.
33. Rowe D (1998) Management trials to restore dwarf inanga show mosquitofish a threat to native fish. Water and Atmosphere, 6, 10-12.
34. Rozas J, Rozas R (1997) DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Computational Applications to Biosciences, 13, 307-311.
35. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
36. Stevens GR (1980) New Zealand Adrift. Reed, Wellington, New Zealand.
37. Swofford DL (1993) PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1. Illinois Natural History Survey, Champaign, IL.
38. Thompson JD, Higgins DG, Gibson JJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4693-1680.
39. Turner TF (1997) Mitochondrial control region sequences and phylogenetic systematics of darters (Teleostei: Percidae). Copeia, 1997, 319-338.
40. Waters JM, White WG (1997) Molecular phylogeny of the Tasmanian and New Zealand mudfishes (Salmoniformes: Galaxiidae). Australian Journal of Zoology, 45, 39-48.
41. Wilkinson GS, Mayer F, Kerth G, Petri B (1997) Evolution of repeated sequence arrays in evening bat D-loop mtDNA. Genetics, 128, 607-617.
42. Zardoya R (1995) The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. Journal of Molecular Evolution, 41, 942-951.