-
2
-
-
0029889221
-
Local alignment statistics
-
Altschul, S.F., and Gish, W. 1996. Local alignment statistics. Methods Enzymol. 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., et al. 1997. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
-
5
-
-
0031903739
-
Sequence alignment in molecular biology
-
Apostolico, A., and Giancarlo, R. 1998. Sequence alignment in molecular biology. J. Comput. Biol. 5, 173-196.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 173-196
-
-
Apostolico, A.1
Giancarlo, R.2
-
6
-
-
85069239649
-
Stochastic scrabble: A law of large numbers for sequence matching with scores
-
Arratia, R.A., Morris, P., and Waterman, M.S. 1988. Stochastic scrabble: a law of large numbers for sequence matching with scores. J. Theor. Biol. 108, 333-337.
-
(1988)
J. Theor. Biol.
, vol.108
, pp. 333-337
-
-
Arratia, R.A.1
Morris, P.2
Waterman, M.S.3
-
7
-
-
0001619220
-
A phase transition for the score in matching random sequences allowing deletions
-
Arratia, R.R., and Waterman, M.S. 1994. A phase transition for the score in matching random sequences allowing deletions. Ann. Appl. Probabil. 4, 200-225.
-
(1994)
Ann. Appl. Probabil.
, vol.4
, pp. 200-225
-
-
Arratia, R.R.1
Waterman, M.S.2
-
9
-
-
0027483434
-
Empirical and structural models for insertions and deletions in the divergent evolution of proteins
-
Benner, S.A., Cohen, M.A., and Gonnet, G.H. 1993. Empirical and structural models for insertions and deletions in the divergent evolution of proteins. J. Mol. Biol. 229, 1065-1082.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 1065-1082
-
-
Benner, S.A.1
Cohen, M.A.2
Gonnet, G.H.3
-
10
-
-
0023984741
-
The significance of protein sequence similarities
-
Collins, J., Coulson, A., and Lyall, A. 1988. The significance of protein sequence similarities. Comput. Appl. Biosci. 4, 67-71.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 67-71
-
-
Collins, J.1
Coulson, A.2
Lyall, A.3
-
11
-
-
0020649886
-
Establishing homologies in protein sequences
-
Dayhoff, M.O., Barker, W.C., and Hunt, L.T. 1983. Establishing homologies in protein sequences. Methods Enzymol. 91, 524.
-
(1983)
Methods Enzymol.
, vol.91
, pp. 524
-
-
Dayhoff, M.O.1
Barker, W.C.2
Hunt, L.T.3
-
12
-
-
0000387250
-
Strong limit theorems of empirical distributions for large segmental exceedences of partial sums of Markov variables
-
Dembo, A., and Karlin, S. 1991. Strong limit theorems of empirical distributions for large segmental exceedences of partial sums of Markov variables. Ann. Probabil. 19, 1756-1767.
-
(1991)
Ann. Probabil.
, vol.19
, pp. 1756-1767
-
-
Dembo, A.1
Karlin, S.2
-
13
-
-
0000526802
-
Limit distribution of maximal non-aligned two-sequence segmental score
-
Dembo, A., Karlin, S., and Zeitouni, O. 1994. Limit distribution of maximal non-aligned two-sequence segmental score. Ann. Prob. 22, 2022-2039.
-
(1994)
Ann. Prob.
, vol.22
, pp. 2022-2039
-
-
Dembo, A.1
Karlin, S.2
Zeitouni, O.3
-
14
-
-
0031608753
-
A statistical theory of sequence alignment with gaps
-
Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D., and Sensen, S., eds., AAAI Press, Menlo Park, CA
-
Drasdo, D., Hwa, T., and Lassig, M. 1998. A statistical theory of sequence alignment with gaps, 52-58. In Glasgow, J., Littlejohn, T., Major, F., Lathrop, R., Sankoff, D., and Sensen, S., eds., Sixth International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
(1998)
Sixth International Conference on Intelligent Systems for Molecular Biology
, pp. 52-58
-
-
Drasdo, D.1
Hwa, T.2
Lassig, M.3
-
15
-
-
0003516147
-
-
Cambridge University Press, Cambridge, U.K.
-
Durbin, R., Eddy, S., Krogh, A., and Mitchison, G. 1998. Biological Sequence Analysis. Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, U.K.
-
(1998)
Biological Sequence Analysis. Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
17
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh, O. 1982. An improved algorithm for matching biological sequences. J. Mol. Biol. 162, 705-708.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
18
-
-
0028943946
-
The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment
-
Gu, X., and Li, W.-H. 1995. The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment. J. Mol. Evol. 40, 464-473.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 464-473
-
-
Gu, X.1
Li, W.-H.2
-
19
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S., and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. U.S.A. 89, 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
20
-
-
0001506434
-
Extreme values in the gi/g/1 queue
-
Iglehart, D.L. 1972. Extreme values in the gi/g/1 queue. Ann. Math. Stat. 43, 627-635.
-
(1972)
Ann. Math. Stat.
, vol.43
, pp. 627-635
-
-
Iglehart, D.L.1
-
21
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin, S., and Altschul, S.F. 1990. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. U.S.A. 87, 2264-2268.
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
22
-
-
0027175241
-
Applications and statistics for multiple high-scoring segments in molecular sequences
-
Karlin, S., and Altschul, S.F. 1993. Applications and statistics for multiple high-scoring segments in molecular sequences. Proc. Natl. Acad. Sci. U.S.A. 90, 5873-5877.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 5873-5877
-
-
Karlin, S.1
Altschul, S.F.2
-
23
-
-
0000586227
-
Limit distributions of maximal segmental score amoung Makrov-dependent partial sums
-
Karlin, S., and Dembo, A. 1992. Limit distributions of maximal segmental score amoung Makrov-dependent partial sums. Adv. Appl. Probabil. 24, 113-140.
-
(1992)
Adv. Appl. Probabil.
, vol.24
, pp. 113-140
-
-
Karlin, S.1
Dembo, A.2
-
24
-
-
0028716060
-
Sequence comparisons via algorithmic mutual information
-
Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., AAAI Press, Menlo Park, CA
-
Milosavljevic, A. 1994. Sequence comparisons via algorithmic mutual information, 303-309. In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., Second International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
(1994)
Second International Conference on Intelligent Systems for Molecular Biology
, pp. 303-309
-
-
Milosavljevic, A.1
-
25
-
-
0002064379
-
Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores
-
Mott, R.F. 1992. Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores. Bull. Math. Biol. 54, 59-75.
-
(1992)
Bull. Math. Biol.
, vol.54
, pp. 59-75
-
-
Mott, R.F.1
-
26
-
-
0030870076
-
Est_genome: A program to align spliced DNA sequences to unspliced genomic DNA
-
Mott, R.F. 1997. Est_genome: a program to align spliced DNA sequences to unspliced genomic DNA. Comput. Appl. Biosci. 13, 477-478.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 477-478
-
-
Mott, R.F.1
-
27
-
-
0032770364
-
Local sequence alignments with monotonic gap penalties
-
Submitted
-
Mott, R.F. 1999. Local sequence alignments with monotonic gap penalties. Bioinformatics. (Submitted.)
-
(1999)
Bioinformatics
-
-
Mott, R.F.1
-
28
-
-
21844500006
-
A Poisson approximation for sequence comparisons with insertions and deletions
-
Neuhauser, C. 1994. A Poisson approximation for sequence comparisons with insertions and deletions. Ann. Stat. 33, 1603-1629.
-
(1994)
Ann. Stat.
, vol.33
, pp. 1603-1629
-
-
Neuhauser, C.1
-
29
-
-
0032512799
-
Empirical statistical estimates for sequence similarity searches
-
Pearson, W.R. 1998. Empirical statistical estimates for sequence similarity searches. J. Mol. Biol. 276, 71-84.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 71-84
-
-
Pearson, W.R.1
-
30
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. U.S.A. 852, 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.852
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
31
-
-
0026008859
-
Distribution of glutamine and asparagine residues and their near neighbors in peptides and proteins
-
Robinson, A., and Robinson, L. 1991. Distribution of glutamine and asparagine residues and their near neighbors in peptides and proteins. Proc. Natl. Acad. Sci. U.S.A. 88, 8880-8884.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 8880-8884
-
-
Robinson, A.1
Robinson, L.2
-
32
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F., and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
33
-
-
0031829618
-
Statistics of large-scale sequence searching
-
Spang, R., and Vingron, M. 1998. Statistics of large-scale sequence searching. Bioinformatics 14, 279-284.
-
(1998)
Bioinformatics
, vol.14
, pp. 279-284
-
-
Spang, R.1
Vingron, M.2
-
35
-
-
0006711632
-
Phase transitions in sequence matches and nucleic acid structure
-
Waterman, M.S., Gordon, L., and Arratia, R. 1987. Phase transitions in sequence matches and nucleic acid structure. Proc. Natl. Acad. Sci. U.S.A. 84, 1239-1243.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 1239-1243
-
-
Waterman, M.S.1
Gordon, L.2
Arratia, R.3
-
36
-
-
0028234758
-
Rapid and accurate estimates of statistical significance for sequence database searches
-
Waterman, M.S., and Vingron, M. 1994a. Rapid and accurate estimates of statistical significance for sequence database searches. Proc. Natl. Acad. Sci. U.S.A. 91, 4625-4628.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 4625-4628
-
-
Waterman, M.S.1
Vingron, M.2
-
37
-
-
84972546031
-
Sequence comparison significance and Poisson approximation
-
Waterman, M.S., and Vingron, M. 1994b. Sequence comparison significance and Poisson approximation. Stat. Sci. 9, 367-381.
-
(1994)
Stat. Sci.
, vol.9
, pp. 367-381
-
-
Waterman, M.S.1
Vingron, M.2
-
38
-
-
0031874740
-
Bayesian adaptive sequence alignment algorithms
-
Zhu, J., Liu, J.S., and Lawrence, C.E. 1998. Bayesian adaptive sequence alignment algorithms. Bioinformatics 14, 25-39.
-
(1998)
Bioinformatics
, vol.14
, pp. 25-39
-
-
Zhu, J.1
Liu, J.S.2
Lawrence, C.E.3
|