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Volumn 14, Issue 3, 1998, Pages 279-284

Statistics of large-scale sequence searching

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; CONFERENCE PAPER; DATA BASE; PRIORITY JOURNAL; SCORING SYSTEM; SEQUENCE ANALYSIS; STATISTICS;

EID: 0031829618     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.3.279     Document Type: Conference Paper
Times cited : (16)

References (22)
  • 1
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • Altschul, S.F. and Gish, W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
    • (1996) Methods Enzymol. , vol.266 , pp. 460-480
    • Altschul, S.F.1    Gish, W.2
  • 3
    • 0000051438 scopus 로고
    • An extreme value theory for sequence matching
    • Arratia, R., Gordon, L. and Waterman, M.S. (1986) An extreme value theory for sequence matching. Ann. Stat., 14, 971-993.
    • (1986) Ann. Stat. , vol.14 , pp. 971-993
    • Arratia, R.1    Gordon, L.2    Waterman, M.S.3
  • 4
    • 0000964654 scopus 로고
    • Stochastic scrabble: Large deviations for sequences with scores
    • Arratia, R., Morris, P. and Waterman, M.S. (1988) Stochastic scrabble: Large deviations for sequences with scores. J. Appl. Prob., 25, 106-119.
    • (1988) J. Appl. Prob. , vol.25 , pp. 106-119
    • Arratia, R.1    Morris, P.2    Waterman, M.S.3
  • 5
    • 0029916911 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank, and its new supplement trembl
    • Bairoch, A. and Apweiler, R. (1996) The SWISS-PROT protein sequence data bank, and its new supplement trembl. Nucleic Acids Res., 24, 21-25.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 21-25
    • Bairoch, A.1    Apweiler, R.2
  • 6
    • 0023984741 scopus 로고
    • The significance of protein sequence similarities
    • Collins J., Coulson, A. and Lyall, A. (1988) The significance of protein sequence similarities. Comput. Applic. Biosci., 4, 67-71.
    • (1988) Comput. Applic. Biosci. , vol.4 , pp. 67-71
    • Collins, J.1    Coulson, A.2    Lyall, A.3
  • 7
  • 8
    • 0000387249 scopus 로고
    • Strong limit theorems of empirical functionals for large exceedances of partial sums of i.i.d. variables
    • Dembo, A. and Karlin, S. (1991a) Strong limit theorems of empirical functionals for large exceedances of partial sums of i.i.d. variables. Ann. Prob., 19, 1737-1755.
    • (1991) Ann. Prob. , vol.19 , pp. 1737-1755
    • Dembo, A.1    Karlin, S.2
  • 9
    • 0000387250 scopus 로고
    • Strong limit theorems of empirical distributions for large segmental exceedances of partial sums of Markov variables
    • Dembo, A. and Karlin, S. (1991b) Strong limit theorems of empirical distributions for large segmental exceedances of partial sums of Markov variables. Ann. Prob., 19, 1756-1767.
    • (1991) Ann. Prob. , vol.19 , pp. 1756-1767
    • Dembo, A.1    Karlin, S.2
  • 10
    • 0000526802 scopus 로고
    • Limit distribution of maximal non-aligned two-sequence segmental score
    • Dembo, A., Karlin, S. and Zeitouni, O. (1994) Limit distribution of maximal non-aligned two-sequence segmental score. Ann. Prob , 22, 2022-2039.
    • (1994) Ann. Prob , vol.22 , pp. 2022-2039
    • Dembo, A.1    Karlin, S.2    Zeitouni, O.3
  • 11
  • 12
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S. and Henikoff, J.C. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.C.2
  • 13
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and Altschul, S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 14
    • 0001318108 scopus 로고
    • Statistical composition of high-scoring segments from molecular sequences
    • Karlin, S., Dembo, A. and Kawabata, T. (1990) Statistical composition of high-scoring segments from molecular sequences. Ann. Stat., 18, 571-581.
    • (1990) Ann. Stat. , vol.18 , pp. 571-581
    • Karlin, S.1    Dembo, A.2    Kawabata, T.3
  • 15
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D.J. and Pearson, W.R. (1985) Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 16
    • 0023723196 scopus 로고
    • Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences
    • McCaldon, P. and Argos, P. (1988) Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences. Proteins: Struct. Funct. Genet., 4, 99-104.
    • (1988) Proteins: Struct. Funct. Genet. , vol.4 , pp. 99-104
    • McCaldon, P.1    Argos, P.2
  • 17
    • 0002064379 scopus 로고
    • Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local similarity scores
    • Mott, R. (1992) Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local similarity scores. Bull. Math. Biol., 54, 59-75.
    • (1992) Bull. Math. Biol. , vol.54 , pp. 59-75
    • Mott, R.1
  • 18
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 19
    • 0019887799 scopus 로고
    • The identification of common molecular subsequences
    • Smith, T.F. and Waterman, M.S. (1981) The identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 21
    • 84972546031 scopus 로고
    • Sequence comparison significance and Poisson approximation
    • Waterman, M.S. and Vingron, M. (1994a) Sequence comparison significance and Poisson approximation. Stat. Sci., 9, 367.
    • (1994) Stat. Sci. , vol.9 , pp. 367
    • Waterman, M.S.1    Vingron, M.2
  • 22
    • 0028234758 scopus 로고
    • Rapid and accurate estimates of statistical significance for sequence database searches
    • Waterman, M.S. and Vingron, M. (1994b) Rapid and accurate estimates of statistical significance for sequence database searches. Proc. Natl Acad. Sci. USA, 91, 4625-4628.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4625-4628
    • Waterman, M.S.1    Vingron, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.