Carboxy-terminal processing of the large subunit of [Fe] hydrogenase from Desulfovibrio desulfuricans ATCC 7757

Journal of Bacteriology

Volumn 181, Issue 9, 1999, Pages 2947-2952

  Hatchikian, E Claude ^a   Macro, Valérie ^a   Forget, Nicole ^a   Nicolet, Yvain ^b   Fontecilla Camps, Juan C ^b  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b CEA GRENOBLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; HYDROGENASE; IRON;

AMINO ACID SEQUENCE; ARTICLE; DESULFOVIBRIO; ENZYME PURIFICATION; ENZYME SUBUNIT; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO VULGARIS; DESULFOVIBRIO VULGARIS SUBSP. VULGARIS STR. HILDENBOROUGH; NEGIBACTERIA; PROKARYOTA;

EID: 0032924338     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.9.2947-2952.1999     Document Type: Article

References (40)

1. Adams, M. W. W. 1990. The structure and mechanism of iron-hydrogenases. Biochim. Biophys. Acta 1020:115-145.
2. Albracht, S. P. J. 1994. Nickel hydrogenases: in search for the active site. Biochim. Biophys. Acta 1188:167-204.
3. Berks, B. C. 1996. A common export pathway for proteins binding complex redox cofactors? Mol. Microbiol. 22:393-404.
4. Bogsch, E. G., F. Sargent, N. R. Stanley, B. C. Berks, C. Robinson, and T. Palmer. 1998. An essential component of a novel bacterial protein export system with homologues in plastids and mitochondria. J. Biol. Chem. 273: 18003-18006.
5. Casalot, L., E. C. Hatchikian, N. Forget, P. de Philip, Z. Dermoun, J.-P. Bélaich, and M. Rousset. 1998. Molecular study and partial characterization of iron-only hydrogenase in Desulfovibrio fructosovorans. Anaerobe 4:45-55.
6. Devereux, R., S.-H. He, C. L. Doyle, S. Orkland, D. A. Stahl, J. LeGall, and W. B. Whitman. 1990. Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J. Bacteriol. 172:3609-3619.
7. Diner, B. A., D. F. Ries, B. N. Cohen, and J. G. Metz. 1988. COOH-terminal processing of polypeptide D1 of the photosystem II reaction center of Scenedesmus obliquus is necessary for the assembly of the oxygen-evolving complex. J. Biol. Chem. 263:8972-8980.
8. Fauque, G., H. D. Peck, Jr., J. J. G. Moura, B. H. Huynh, Y. Berlier, D. V. DerVartanian, M. Teixeira, A. E. Przybyla, P. A. Lespinat, I. Moura, and J. LeGall. 1988. The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio. FEMS Microbiol. Rev. 54:299-344.
9. Gollin, D. J., L. E. Mortenson, and R. L. Robson. 1992. Carboxyl-terminal processing may be essential for production of active NiFe hydrogenase in Azotobacter vinelandaii. FEBS Lett 309:371-375.
10. Gorwa, M.-F., C. Croux, and P. Soucaille. 1996. Molecular characterization and transcriptional analysis of the putative hydrogenase gene of Clostridium acetobutylicum ATCC 824. J. Bacteriol. 178:2668-2675.
11. Grande, H. J., W. R. Dunham, B. Averill, C. Van Dijk, and R. H. Sands. 1983. Electron paramagnetic resonance and other properties of hydrogenases isolated from Desulfovibrio vulgaris (strain Hildenborough) and Megasphaera elsdenii. Eur. J. Biochem. 136:201-207.
12. Hagen, W. R., A. Van Berkel-Arts, K. M. Kruse-Wolters, G. Voordouw, and C. Veeger. 1986. The iron-sulfur composition of the active site of hydrogenase from Desulfovibrio vulgaris (Hildenborough) deduced from its subunit structure and total iron-sulfur content. FEBS Lett. 203:59-63.
13. Hatchikian, E. C., N. Forget, V. M. Fernandez, R. Williams, and R. Cammack. 1992. Further characterization of the [Fe] hydrogenase from Desulfovibrio desulfitricans ATCC 7757. Eur. J. Biochem. 209:357-365.
14. Higuchi, Y., T. Yagi, and N. Yasuoka. 1997. Unusual ligand structure in Ni-Fe active center and a additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis. Structure 5:1671-1680.
15. 3 from Desulfovibrio africanus: nucleotide sequences, EPR spectroscopy and biological activity. Biochim. Biophys. Acta 1342:149-163.
16. Meyer, J., and J. Gagnon. 1991. Primary structure of hydrogenase I from Clostridium pasteurianum. Biochemistry 30:9697-9704.
17. Nagasawa, H., Y. Sakagami, A. Suzuki, H. Suzuki, H. Hara, and Y. Hirota. 1989. Determination of the cleavage site involved in C-terminal processing of penicillin-binding protein 3 of Escherichia coli. J. Bacteriol. 171:5890-5893.
18. Nicolet, Y., C. Piras, P. Legrand, E. C. Hatchikian, and J. C. Fontecilla-Camps. 1999. Desulfovibrio desulfuricans iron hydrogenase: the structure shows unusual coordination to an active site Fe binuclear center. Structure 7:13-23.
19. Nivière, V., A. Bernadac, N. Forget, V. M. Fernandez, and E. C. Hatchikian. 1990. Localization of hydrogenase in Desulfovibrio gigas cells. Arch. Microbiol. 155:579-586.
20. Nivière, V., S.-L. Wong, and G. Voordouw. 1992. Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a β-lactamase fusion protein. J. Gen. Microbiol. 138:2173-2183.
21. Odom, J. M., and H. D. Peck, Jr. 1984. Hydrogenase, electron transfer proteins, and energy coupling in the sulfate-reducing bacteria Desulfovibrio. Annu. Rev. Microbiol. 38:551-592.
22. Patil, D. S., J. J. G. Moura, S. H. He, M. Teixeira, B. C. Prickril, D. V. DerVartanian, H. D. Peck Jr., J. LeGall, and B.-H. Huynh. 1988. EPR-detectable redox centers of the periplasmic hydrogenase from Desulfovibrio vulgaris. J. Biol. Chem. 263:18732-18738.
23. Pierik, A. J., W. R. Hagen, J. S. Redeker, R. B. G. Wolbert, M. Boresma, M. F. J. M. Verhagen, H. J. Grande, C. Veeger, P. H. A. Mutsaers, R. H. Sands, and W. R. Dunham. 1992. Redox properties of the iron-sulfur clusters in activated Fe-hydrogenase from Desulfovibrio vulgaris (Hildenborough). Eur. J. Biochem. 209:63-72.
24. Przybyla, A. E., J. Robbins, N. Menon, and H. D. Peck, Jr. 1992. Structure-function relationships among the nickel-containing hydrogenases. FEMS Microbiol. Rev. 88:109-136.
25. Rodrigue, A., D. H. Boxer, M. A. Mandrand-Berthelot, and L.-F. Wu. 1996. Requirement for nickel of the transmembrane translocation of NiFe-hydrogenase 2 in Escherichia coli. FEBS Lett. 392:81-86.
26. Roise, D., S. J. Horvath, J. M. Tomich, J. H. Richards, and G. Schatz. 1986. A chemically synthesized pre-sequence of an imported mitochondrial protein can form an amphiphilic helix and perturb natural and artificial phospholipid bilayers. EMBO J. 5:1327-1334.
27. Rossman, R., M. Sauter, F. Lottspeich, and A. Böck. 1994. Maturation of the large subunit (HycE) of hydrogenase 3 of Escherichia coli requires nickel incorporation followed by C-terminal processing at Arg537. Eur. J. Biochem. 220:377-384.
28. Santini, C.-L., B. Ize, A. Chanal, M. Müller, G. Giordano, and L.-F. Wu. 1998. A novel Sec-independent periplasmic protein translocation pathway in Escherichia coli. EMBO J. 17:101-112.
29. Saunders, G. F., L. L. Campbell, and J. R. Postgate. 1964. Base composition of deoxyribonucleic acid of sulfate-reducing bacteria deduced from buoyant density measurement in cesium chloride. J. Bacteriol. 87:1073-1078.
30. Schatz, G., and B. Dobberstein. 1996. Common principles of protein translocation across membranes. Science 271:1519-1526.
31. Subramani, S. 1996. Convergence of model systems for peroxisome biogenesis. Curr. Opin. Cell Biol. 8:513-518.
32. Van der Westen, H., S. G. Mayhew, and C. Veeger. 1978. Separation of hydrogenase from intact cells of Desulfovibrio vulgaris. FEBS Lett. 86:122-126.
33. Van Dongen, W., W. R. Hagen, W. Van den Berg, and C. Veeger. 1988. Evidence for an unusual mechanism of membrane translocation of the periplasmic hydrogenase of Desulfovibrio vulgaris (Hildenborough), as derived from expression in Escherichia coli. FEMS Microbiol. Lett. 50:5-9.
34. Volbeda, A., C. Piras, M.-H. Charon, E. C. Hatchikian, M. Frey, and J. C. Fontecilla-Camps. 1995. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature 373:580-587.
35. Volbeda, A., E. Garcin, C. Piras, A. I. de Lacey, V. M. Fernandez, E. C. Hatchikian, M. Frey, and J. C. Fontecilla Camps. 1996. Structure of the [NiFe] hydrogenase active site: evidence for biological uncommon Fe ligands. J. Am. Chem. Soc. 118:12989-12996.
36. von Heijne, G. 1986. Mitochondrial targeting sequences may form amphiphilic helices. EMBO J. 5:1335-1342.
37. Voordouw, G., and S. Brenner. 1985. Nucleotide sequence of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough). Eur. J. Biochem. 148:515-520.
38. Voordouw, G., J. D. Strang, and F. R. Wilson. 1989. Organization of the genes encoding [Fe] hydrogenase in Desulfovibrio vulgaris subsp. oxamicus Monticello. J. Bacteriol. 171:3881-3889.
39. Voordouw, G. 1990. Hydrogenase genes in Desulfovibrio, p. 37-51. In J. P. Bélaich, M. Bruschi and J. L. Garcia (ed.), Microbiology and biochemistry of strict anaerobes involved in interspecies hydrogen transfer. Plenum Press, New York, N.Y.
40. Voordouw, G. 1992. Evolution of hydrogenase genes. Adv. Inorg. Chem. 38:397-422.