Molecular characterization of pdc2 and mapping of three pdc genes from rice

Theoretical and Applied Genetics

Volumn 98, Issue 5, 1999, Pages 815-824

  Huq, E ^a,c   Harrington, S ^b   Hossain, M A ^a,d   Wen, F ^a,e   McCouch, S R ^b   Hodges, T K ^a  

^a PURDUE UNIVERSITY   (United States)

^b Department of Obstetrics Gynecology   (United States)

^c PLANT GENE EXPRESSION CENTER   (United States)

^d UNIVERSITY OF DHAKA   (Bangladesh)

^e SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Flooding tolerance; Molecular mapping; Orthologous loci; Pyruvate decarboxylase (pdc); Rice

Indexed keywords

AMINO ACID SEQUENCE; ANAEROBIC FERMENTATION; ANOXIA; CHROMOSOMAL LOCALIZATION; GENE EXPRESSION; GENE LOCATION; INTRON; MOLECULAR CLONING; MOLECULAR WEIGHT; OPEN READING FRAME; PYRUVATE DECARBOXYLASE 2; RICE;

EID: 0032901673     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051138     Document Type: Article

References (43)

1. Bucher M, Brandle R, Kuhlemeier C (1994) Ethanolic fermentation in transgenic tobacco expressing Zymomonas mobilis pyruvate decarboxylase. EMBO J 13:2755-2763
2. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251-1274
3. Conway T, Osman YA, Konnan JI, Hoffman EM, Ingram LO (1987) Promoter and nucleotide sequences of the Zymomonas mobilis pyruvate decarboxylase. J Bacterial 169:949-954
4. Crawford RMM, Braendle R (1996) Oxygen deprivation stress in a changing environment. J Exp Bot 47:145-159
5. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395
6. Dolferus R, Jacobs M, Peacock WJ, Dennis ES (1994) Differential interactions of promoter elements in stress responses of the Arabidopsis adh gene. Plant Physiol 105:1075-1087
7. Ferl RJ, Laughner BH (1989) In vivo detection of regulatory factor binding sites of Arabidopsis thaliana adh. Plant Mol Biol 12: 357-366
8. Hanley BA, Schuler MA (1988) Plant intron sequences: evidence for distinct groups of introns. Nucleic Acids Res 16:7159-7176
9. Haque QA, Hillerislambers D, Tepora NM, Delacruz QD (1989) Inheritance of submergence tolerance in rice. Euphytica 41: 247-251
10. Hossain MA, Huq E, Hodges TK (1994 a) Sequence of a cDNA from Oryza sativa (L.) encoding the pyruvate decarboxylase 1 gene. Plant Physiol 106:799-800
11. Hossain MA, McGee JD, Grover A, Dennis ES, Peacock WJ, Hodges TK (1994 b) Nucleotide sequence of a rice genomic pyruvate decarboxylase gene that lacks introns: a pseudo gene? Plant Physiol 106:1697-1698
12. Hossain MA, Huq E, Grover A, Dennis ES, Peacock WJ, Hodges TK (1996) Characterization of pyruvate decarboxylase genes from rice. Plant Mol Biol 31:761-770
13. Huq E, Hossain MA, Hodges TK (1995) Cloning and sequencing of a cDNA encoding the pyruvate decarboxylase 2 gene (Accession No. U27350) from rice. Plant Physiol 109:722
14. Huq, E, Hirayama, L, Hossain, MA, Hodges, TK (1997) Characterization of a cDNA encoding the polyubiquitin gene in rice (Accession No. U37687). Plant Physiol 113:305
15. Johnson JR, Cobb BG, Drew MC (1994) Hypoxic induction of anoxia tolerance in roots of adhl null Zea mays L. Plant Physiol 105:61-67
16. Joshi CP (1987) An inspection of the domain between the putative TATA box and the translation start site in 79 plant genes. Nucleic Acids Res 15:6643-6653
17. Kellerman E, Seeboth PG, Hollenberg CP (1986) Analysis of the primary structure and promoter function of a pyruvate decarboxylase gene (PDC1) from Saccharomyces cerevisiae. Nucleic Acids Res 14:8963-8977
18. Kelley PM (1989) Maize pyruvate decarboxylase mRNA is induced anaerobically. Plant Mol Biol 13:213-222
19. Kelley PM, Godfrey K, Lal SK, Alleman M (1991) Characterization of the maize pyruvate decarboxylase gene. Plant Mol Biol 17:1259-1261
20. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-175
21. Kozak M (1981) Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes. Nucleic Acids Res 9:5233-5252
22. Lander S, Green P, Abrahamson J, Barlow A, Day MJ (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
23. Logemann J, Schell J, Willmitzer L (1987) Improved method for the isolation of RNA from plant tissues. Anal Biochem 163:16-20
24. Marck C (1988) 'DNA strider' : a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res 16:1829-1836
25. Mohanty HK, Khush GS (1985) Diallel analysis of submergence tolerance in rice, Oryza sativa L. Theor Appl Genet 70: 467-473
26. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol Plant 15:473-497
27. Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N (1997) Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol Gen Genet 255:1-8
28. Olive MR, Walker JC, Singh K, Dennis ES, Peacock WJ (1990) Functional properties of the anaerobic responsive element of the maize adhl gene. Plant Mol Biol 15:593-604
29. Olive MR, Peacock WJ, Dennis ES (1991) The anaerobic response element contains two GC-rich sequences essential for binding a nuclear protein and hypoxic activation of the maize adhl promoter. Nucleic Acids Res 19:7053-7060
30. Paul E, Blinstrub M, McCouch SR (curators) (1997) Rice genes. Database accessible via World Wide Web, http://probe.nalusda. gov:8300
31. Perata P, Alpi A (1993) Plant responses to anaerobiosis. Plant Sci 93:1-17
32. Peschke VM, Sachs MM (1993) Multiple pyruvate decarboxylase genes in maize are induced by hypoxia. Mol Gen Genet 240: 206-212
33. Rivoal J, Ricard B, Pradet A (1990) Purification and partial characterization of pyruvate decarboxylase from Oryza sativa L. Eur J Biochem 194:791-797
34. Rivoal J, Thind S, Pradet A, Rivard B (1997) Differential induction of pyruvate decarboxylase subunits and transcripts in anoxic rice seedlings. Plant Physiol 114:1021-1029
35. Roberts JKM, Chang K, Webster C, Callis J, Walbot V (1989) Dependence of ethanolic fermentation, cytoplasmic pH regulation, and viability on the activity of alcohol dehydrogenase in hypoxic maize root tips. Plant Physiol 89:1275-1278
36. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
37. Setter TL, Ellis M, Laureles EV, Ella ES, Senadhira D, Mishra SB, Sarkarung S, Datta S (1997) Physiology and genetics of submergence tolerance in rice. Ann Bot 79:67-77
38. Singh K, Ishii T, Parco A, Huang N, Brar DS, Khush GS(1996) Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.) Proc Natl Acad Sci USA 93:6163-6168
39. VanDeynze AE, Nelson JC, O'Donoughue LS, Ahn SN, Siripoonwiwat W, Harrington SE, Yglesias ES, Braga DP, McCouch SR, Sorrells ME (1995 a) Comparative mapping in grasses. Oat relationships. Mol Gen Genet 249:349-356
40. VanDeynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME (1995 b) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248:744-754
41. Vetten NC de, Ferl RJ (1994) Transcriptional regulation of environmentally inducible genes in plants by an evolutionarily conserved family of G-box binding factors. Int J Biochem 26:1055-1068
42. Waters I, Morrell S, Greenway H, Colmer TD (1991) Effects of anoxia on wheat seedlings. J Exp Bot 42:1437-1447
43. Xu K, Mackill DJ (1996) A major locus for submergence tolerance mapped on rice chromosome 9. Mol Breed 2:219-224