Characterization of pyruvate decarboxylase genes from rice

Plant Molecular Biology

Volumn 31, Issue 4, 1996, Pages 761-770

  Hossain, M Anwar ^a,c   Huq, Enamul ^a   Grover, Anil ^b,d   Dennis, Elizabeth S ^b   Peacock, W James ^b   Hodges, Thomas K ^a  

^a PURDUE UNIVERSITY   (United States)

^b CSIRO   (Australia)

^c UNIVERSITY OF DHAKA   (Bangladesh)

^d UNIVERSITY OF DELHI   (India)

Author keywords

anoxia; pyruvate decarboxylase; rice; submergence tolerance

Indexed keywords

EID: 0030199302     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00019464     Document Type: Article

References (38)

1. Andreev VY, Vartapetian BB: Induction of alcoholic and lactic fermentation in the early stages of anaerobic incubation of higher plants. Phytochemistry 31: 1859-1861 (1992).
2. Armstrong W: Aeration in higher plants. Adv Bot Res 7: 225-232 (1979).
3. Ausubel FM, Brent R, Kingston RE, Moore DD, Smith JA, Seidman JG, Struhl K: Current Protocols in Molecular Biology, pp. 4.8.1-4.8.3. Greene Publishing Associates/Wiley-Interscience, New York (1987).
4. Bailey-Serres J, Kloeckener-Gruissem B, Freeling M: Genetic and molecular approaches to the study of the anaerobic response and tissue specific gene expression in maize. Plant Cell Environ 11: 351-357 (1988).
5. Conway T, Osman YA, Konnan JI, Hoffman EM, Ingram LO: Promoter and nucleotide sequences of the Zymomonas mobilis pyruvate decarboxylase. J Bact 169: 949-954 (1987).
6. Davies DD, Grego S, Kenworth P: The control of the production of lactate and ethanol in higher plants. Planta 118: 297-310 (1974).
7. Devereux J, Haeberli P, Smithies O: A comprehensive set of sequence analysis programs for the VAX. Nucl Acids Res 12: 387-395 (1984).
8. Dolferus R, Jacobs M, Peacock WJ, Dennis ES: Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene. Plant Physiol 105: 1075-1087 (1994).
9. Ferl RJ, Laughner BH: In vivo detection of regulatory factor binding sites of Arabidopsis thaliana Adh. Plant Mol Biol 12: 357-366 (1989).
10. Good AG, Muench DG: Long-term anaerobic metabolism in root tissue. Metabolic products of pyruvate metabolism. Plant Physiol 101: 1163-1168 (1993).
11. Hanley BA, Schuler MA: Plant intron sequences: evidence for distinct groups of introns. Nucl Acids Res 16: 7159-7176 (1988).
12. Hossain MA, Huq E, Hodges TK: Sequence of a cDNA from Oryza sativa (L.) encoding pyruvate decarboxylase 1 gene. Plant Physiol 106: 799-800 (1994).
13. Hossain MA, McGee JD, Grover A, Dennis ES, Peacock WJ, Hodges TK: Nucleotide sequence of a rice genomic pyruvate decarboxylase gene that lacks introns: a pseudo gene? Plant Physiol 106: 1697-1698 (1994).
14. Huq E, Hossain MA. Hodges TK: Cloning and sequencing of a cDNA encoding pyruvate decarboxylase 2 gene (Accession no. U27350) from rice. Plant Physiol 109: 722 (1995).
15. Joshi CP: An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucl Acids Res 15: 6643-6653 (1987).
16. Kellerman E, Seeboth PG, Hollenberg CP: Analysis of the primary structure and promoter function of a pyruvate decarboxylase gene (PDC1) from Saccharomyces cerevisiae. Nucl Acids Res 14: 8663-8977 (1986).
17. Kelley PM: Maize pyruvate decarboxylase mRNA is induced anaerobically. Plant Mol Biol 13: 213-222 (1989).
18. Kelley PM, Godfrey K, Lal SK, Alleman M: Characterization of the maize pyruvate decarboxylase gene. Plant Mol Biol 17: 1259-1261 (1991).
19. Kozak M: Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes. Nucl Acids Res 9: 5233-5252 (1981).
20. Laszlo A, Lawrence PS: Parallel induction and synthesis of PDC and ADH in anoxic maize roots. Mol Gen Genet 192: 110-117 (1983).
21. Logemann J, Schell J, Willmitzer L: Improved method for the isolation of RNA from plant tissues. Anal Biochem 163: 16-20 (1987).
22. Marck C: DNA strider: a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucl Acids Res 16: 1829-1836 (1988).
23. McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD: Molecular mapping of rice chromosomes. Theor Appl Genet 76: 815-829 (1988).
24. Menegus F, Cattaruzza L, Chersi A, Fronza G: Differences in the anaerobic lactate-succinate production and in the changes of cell sap pH for plants with high and low resistance to anoxia. Plant Physiol 90: 29-32 (1989).
25. Menegus F, Cattaruzza L, Mattana M, Beffagna N, Ragg E: Response to anoxia in rice and wheat seedlings. Changes in the pH of intracellular compartments, glucose-6-phosphate level and metabolic rate. Plant Physiol 95: 760-767 (1991).
26. Morrel S, Greenway S, Davies DD: Regulation of pyruvate decarboxylase in vitro and in vivo. J Exp Bot 41: 131-139 (1990).
27. Olive MR, Walker JC, Singh K, Dennis ES, Peacock WJ: Functional properties of the anaerobic responsive element of the maize Adh1 gene. Plant Mol Biol 15: 593-604 (1990).
28. Olive MR, Peacock WJ, Dennis ES: The anaerobic response element contains two GC-rich sequences essential for binding a nuclear protein and hypoxic activation of the maize Adh1 promoter. Nucl Acids Res 19: 7053-7060 (1991).
29. Perata P, Alpi A: Plant responses to anaerobiosis. Plant Sci 93: 1-17 (1993).
30. Peschke VM, Sachs MM: Multiple pyruvate decarboxylase genes in maize are induced by hypoxia. Mol Gen Genet 240: 206-212 (1993).
31. Ratcliffe RG: Metabolic aspects of the anoxic response in plant tissue. In: Smirnoff N (ed) Environment and Plant Metabolism, pp. 111-127. Bios Scientific Publishers, Oxford (1995).
32. Rivoal J, Ricard B, Pradet A: Glycolytic and fermentative enzyme induction during anaerobiosis in rice seedlings. Plant Physiol Biochem 27: 43-52 (1989).
33. Rivoal J, Ricard B, Pradet A: Purification and partial characterization of pyruvate decarboxylase from Oryza sativa L. Eur J Biochem 194: 791-797 (1990).
34. Roberts JKM, Callis J, Wemmer D, Walbot V, Jardetsky O: Mechanism of cytoplasmic pH regulation in hypoxic maize root tips and its role in survival under hypoxia. Proc Natl Acad Sci USA 91: 3379-3383 (1984).
35. Sachs MM, Freeling M, Okimoto R: The anaerobic proteins of maize. Cell 20: 761-767 (1980).
36. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1989).
37. Sanger F, Nicklen SC, Coulsen AR: DNA sequencing with chain termination inhibitors. Proc Natl Acad Sci USA 74: 5463-5467 (1977).
38. Waters I, Morrell S, Greenway H, Colmer TD: Effects of anoxia on wheat seedlings. J Exp Bot 42: 1437-1447 (1991).