A catalogue of genes in mouse embryonal carcinoma F9 cells identified with expressed sequence tags

Journal of Biochemistry

Volumn 119, Issue 4, 1996, Pages 749-767

  Nishiguchi, Seiji ^a   Sakuma, Rui ^a   Nomura, Midori ^a   Zou, Zhihua ^a   Jearanaisilavong, Juree ^a,b   Joh, Tadashi ^a   Yasunaga, Teruo ^a   Shimada, Kazunori ^a  

^a OSAKA UNIVERSITY   (Japan)

^b MAHIDOL UNIVERSITY   (Thailand)

Author keywords

Embryonal carcinoma; Expressed sequence tags; F9; Low abundance mRNAs

Indexed keywords

MITOCHONDRIAL DNA; RETINOIC ACID;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BRAIN CELL; CELL DIFFERENTIATION; CELL FUNCTION; CELL MATURATION; CELL STRAIN HEPG2; DATA BASE; DNA DETERMINATION; DNA LIBRARY; DNA SEQUENCE; EMBRYO; EMBRYO DEVELOPMENT; EMBRYONAL CARCINOMA; ENERGY METABOLISM; GENE CONTROL; GENE EXPRESSION; GENE STRUCTURE; GENETIC TRANSCRIPTION; HEART MUSCLE CELL; LIVER CELL; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA TRANSLATION;

ANIMALIA; MAMMALIA;

EID: 0029995136     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a021305     Document Type: Article

References (26)

1. Martin, G.R. (1980) Teratocarcinomas and mammalian embryogenesis. Science 209, 768 776
2. Gudas, L. J. (1991) Retinoic acid and teratocarcinoma stem cells. Semin. Dev. Biol. 2, 171 179
3. Capecchi, M.R. (1989) Altering the genome by homologous recombination. Science 244, 1288-1292
4. Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie, W.R., and Venter, J.C. (1991) Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252, 1651 1656
5. Khan, A.S., Wilcox, A.S., Polymeropoulos, M.H., Hopkins, J.A., Stevens, T.J., Robinson, M., Orpana, A.K., and Sikela, J.M. (1992) Single pass sequencing and physical and genetic mapping of human brain cDNAs. Nature Genet. 2, 180 185
6. Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y., and Matsubara, K. (1992) Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet. 2, 173-179
7. Adams, M.D., Kerlavage, A.R., Fields, C., and Venter, J.C. (1993) 3,400 new expressed sequence tags identify diversity of transcripts in human brain. Nature Genet. 4, 256-267
8. Liew, C.C., Hwang, D.M., Fung, Y.W., Laurenssen, C., Cukerman, E., Tsui, S., and Lee, C.Y. (1994) A catalogue of genes in the cardiovascular system as identified by expressed sequence tags. Proc. Natl. Acad. Sci. USA 91, 10645-10649
9. Sudo, K., Chinen, K., and Nakamura, Y. (1994) 2058 expressed sequence tags (ESTs) from a human fetal lung cDNA library. Genomics 24, 276-279
10. Nishiguchi, S., Joh, T., Horie, K., Zou, Z., Yasunaga, T., and Shimada, K. (1994) A survey of genes expressed in undifferentiated mouse embryonal carcinoma F9 cells: Characterization of low-abundance mRNAs. J. Biochem. 116, 128-139
11. Bernstine, E.G., Hooper, M.L., Grandchamp, S., and Ephrussi, B. (1973) Alkaline phosphatase activity in mouse teratoma. Proc. Natl. Acad. Sci. USA 70, 3899 3903
12. Meyuhas, O. and Perry, R.P. (1979) Relationship between size, stability and abundance of the messenger RNA of mouse L cells. Cell 16, 139-148
13. Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159
14. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410
15. Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448
16. Attardi, G. (1985) Animal mitochondrial DNA: An extreme example of genetic economy. Int. Rev. Cytol. 93, 93-144
17. Vasseur, M., Condamine, H., and Duprey, P. (1985) RNAs containing B2 repeated sequences are transcribed in the early stages of mouse embryogenesis. EMBO J. 4, 1749-1753
18. Taylor, K.D. and Piko, L. (1987) Patterns of mRNA prevalence and expression of B1 and B2 transcripts in early mouse embryos. Development 101, 877 892
19. Bachvarova, R. (1988) Small B2 RNAs in mouse oocytes, embryos, and somatic tissues. Dev. Biol. 130, 513 523
20. Bensaude, O. and Morange, M. (1983) Spontaneous high expression of heat shock proteins in mouse embryonal carcinoma cells and ectoderm from day 8 mouse embryo. EMBO J. 2, 173 177
21. Legagneux, V., Mezger, V., Quelard, C., Barnier, J.V., Bensaude, O., and Morange, M. (1989) High constitutive transcription of HSP86 gene in murine embryonal carcinoma cells. Differentiation 41, 42 48
22. Nomura, M., Takihara, Y., and Shimada, K. (1994) Isolation and characterization of retinoic acid-inducible cDNA clones in F9 cells: One of the early inducible clones encodes a novel protein sharing several highly homologous regions with a Drosophila polyhomeotic protein. Differentiation 57, 39-50
23. Radu, A., Blobel, G., and Moore, M.S. (1995) Identification of a protein complex that is required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. Proc. Natl. Acad. Sci. USA 92, 1769 1773
24. Mortensen, R.M., Conner, D.A., Chao, S., Geisterfer-Lowrance, A.T.T., and Seidman, J.G. (1992) Production of homozygous mutant ES cells with a single targeting construct. Mol. Cell. Biol. 12, 2391-2395
25. Coll, J.-L., Ben-Ze'ev, A., Ezzell, R.M., Fernandex, J.J.R., Baribault, H., Shima, R.G., and Adamson, E.D. (1995) Targeted disruption of vinculin genes in F9 and embryonic stem cells changes cell morphology, adhesion, and locomotion. Proc. Natl. Acad. Sci. USA 92, 9161-9165
26. Altschul, S.F., Boguski, M.S., Gish, W., and Wootton, J.C. (1994) Issues in searching molecular sequence databases. Nature Genet. 6, 119 129